Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g29751 Brassica carinata HOM05D007399 ORTHO05D009341 5.4e-136 487.6 244 100.0
C05p60230 Brassica napus HOM05D007399 ORTHO05D009341 7.1e-88 327.8 203 84.7
BolC5t34673H Brassica oleracea HOM05D007399 ORTHO05D009341 6.7e-86 321.2 203 82.8
BcaC05g29843 Brassica carinata HOM05D007399 ORTHO05D009341 1.9e-85 319.7 203 82.8
BraA05t22833Z Brassica rapa HOM05D007399 ORTHO05D009341 9.7e-85 317.4 204 81.4
A05p41060 Brassica napus HOM05D007399 ORTHO05D009341 6.3e-84 314.7 204 80.9
Sp3g06090 Schrenkiella parvula HOM05D007399 ORTHO05D009341 2.4e-75 286.2 237 70.0
AT3G07150 Arabidopsis thaliana HOM05D007399 ORTHO05D009341 3.0e-70 269.2 201 71.6
AL3G18400 Arabidopsis lyrata HOM05D007399 ORTHO05D009341 5.9e-66 255.0 201 69.7
Thhalv10022223m.g Eutrema salsugineum HOM05D007399 ORTHO05D009341 1.1e-64 250.8 184 70.1
Carub.0003s0667 Capsella rubella HOM05D007399 ORTHO05D009341 1.2e-63 247.3 204 67.6
CARHR081750 Cardamine hirsuta HOM05D007399 ORTHO05D009341 4.1e-59 232.3 233 57.9
Aa31LG5G17710 Aethionema arabicum HOM05D007399 ORTHO05D009341 1.1e-56 224.2 218 61.0
THA.LOC104802666 Tarenaya hassleriana HOM05D007399 ORTHO05D009341 3.8e-49 199.1 217 55.8
Ciclev10022115m.g Citrus clementina HOM05D007399 ORTHO05D009341 9.5e-40 167.9 222 46.8
Duzib133G1013 Durio zibethinus HOM05D007399 ORTHO05D009341 8.9e-38 161.4 204 47.1
Ah.08g214480 Amaranthus hybridus HOM05D007399 ORTHO05D009341 1.2e-37 161.0 215 44.7
Manes.13G046300 Manihot esculenta HOM05D007399 ORTHO05D009341 1.5e-37 160.6 233 44.2
Thecc.01G222700 Theobroma cacao HOM05D007399 ORTHO05D009341 7.5e-37 158.3 232 43.1
PGR083G1511 Punica granatum HOM05D007399 ORTHO05D009341 9.8e-37 157.9 211 46.9
Cc01_g16850 Coffea canephora HOM05D007399 ORTHO05D009341 2.2e-36 156.8 224 42.0
COL.COLO4_15647 Corchorus olitorius HOM05D007399 ORTHO05D009341 3.1e-35 152.9 216 44.4
Hund05568 Selenicereus undatus HOM05D007399 ORTHO05D009341 3.1e-35 152.9 229 43.2
Peaxi162Scf00398g00810 Petunia axillaris HOM05D007399 ORTHO05D009341 5.4e-35 152.1 216 41.7
Prupe.8G200700 Prunus persica HOM05D007399 ORTHO05D009341 5.4e-35 152.1 212 44.3
Gohir.A11G139200 Gossypium hirsutum HOM05D007399 ORTHO05D009341 9.2e-35 151.4 228 43.4
QL09p052198 Quercus lobata HOM05D007399 ORTHO05D009341 1.6e-34 150.6 219 42.0
Dinv19187 Davidia involucrata HOM05D007399 ORTHO05D009341 2.0e-34 150.2 229 41.5
Lsat_1_v5_gn_5_180581 Lactuca sativa HOM05D007399 ORTHO05D009341 5.9e-34 148.7 216 43.5
Gohir.D11G145400 Gossypium hirsutum HOM05D007399 ORTHO05D009341 2.3e-33 146.7 228 41.7
Nitab4.5_0000345g0070 Nicotiana tabacum HOM05D007399 ORTHO05D009341 2.9e-33 146.4 205 43.4
Phvul.010G020400 Phaseolus vulgaris HOM05D007399 ORTHO05D009341 2.9e-33 146.4 214 43.9
Medtr8g013040 Medicago truncatula HOM05D007399 ORTHO05D009341 3.8e-33 146.0 220 42.3
MD05G1173200 Malus domestica HOM05D007399 ORTHO05D009341 6.6e-33 145.2 216 41.7
ECA248G2789 Erigeron canadensis HOM05D007399 ORTHO05D009341 8.6e-33 144.8 209 44.0
HanXRQChr01g0015211 Helianthus annuus HOM05D007399 ORTHO05D009341 1.5e-32 144.1 205 44.4
RcHm_v2.0_Chr6g0284361 Rosa chinensis HOM05D007399 ORTHO05D009341 1.5e-32 144.1 217 46.1
Gorai.007G155900 Gossypium raimondii HOM05D007399 ORTHO05D009341 3.3e-32 142.9 235 40.4
TWI18G0746 Tripterygium wilfordii HOM05D007399 ORTHO05D009341 3.3e-32 142.9 196 42.9
Potri.002G244400 Populus trichocarpa HOM05D007399 ORTHO05D009341 1.6e-31 140.6 108 63.9
Haze_24850 Corylus avellana HOM05D007399 ORTHO05D009341 2.1e-31 140.2 176 48.9
Glyma.16G101000 Glycine max HOM05D007399 ORTHO05D009341 2.1e-31 140.2 202 42.6
Cpa.g.sc8.134 Carica papaya HOM05D007399 ORTHO05D009341 2.8e-31 139.8 101 62.4
Nitab4.5_0000045g0320 Nicotiana tabacum HOM05D007399 ORTHO05D009341 2.8e-31 139.8 209 41.6
AUR62001112 Chenopodium quinoa HOM05D007399 ORTHO05D009341 6.1e-31 138.7 201 40.8
Nn1g07919 Nelumbo nucifera HOM05D007399 ORTHO05D009341 6.1e-31 138.7 126 56.3
FvH4_2g18740 Fragaria vesca HOM05D007399 ORTHO05D009341 1.0e-30 137.9 216 41.7
Sabra02G0185900 Salix brachista HOM05D007399 ORTHO05D009341 1.0e-30 137.9 108 61.1
VMungo0331G1622 Vigna mungo HOM05D007399 ORTHO05D009341 1.0e-30 137.9 194 44.8
Oeu037382.1 Olea europaea HOM05D007399 ORTHO05D009341 1.4e-30 137.5 146 50.0
arahy.Tifrunner.gnm1.ann1.YE6SLX Arachis hypogaea HOM05D007399 ORTHO05D009341 1.8e-30 137.1 227 41.4
FAN15G3119 Fragaria x ananassa HOM05D007399 ORTHO05D009341 2.3e-30 136.7 215 41.4
Cfa002599 Carpinus fangiana HOM05D007399 ORTHO05D009341 3.1e-30 136.3 207 41.1
Rhsim01G0254900 Rhododendron simsii HOM05D007399 ORTHO05D009341 3.1e-30 136.3 102 61.8
Atru.chr6.1505 Acer truncatum HOM05D007399 ORTHO05D009341 4.0e-30 136.0 115 56.5
Eucgr.H00781 Eucalyptus grandis HOM05D007399 ORTHO05D009341 5.2e-30 135.6 212 40.6
Lj3g0000647 Lotus japonicus HOM05D007399 ORTHO05D009341 5.2e-30 135.6 200 41.0
CAN.G3.2 Capsicum annuum HOM05D007399 ORTHO05D009341 8.9e-30 134.8 216 41.7
Oeu037384.1 Olea europaea HOM05D007399 ORTHO05D009341 2.6e-29 133.3 101 64.4
TAR362G0473 Trochodendron aralioides HOM05D007399 ORTHO05D009341 5.8e-29 132.1 212 38.7
Lalb_Chr12g0209951 Lupinus albus HOM05D007399 ORTHO05D009341 9.8e-29 131.3 192 41.7
TPR.G17137 Trifolium pratense HOM05D007399 ORTHO05D009341 1.3e-28 131.0 217 43.8
CiPaw.03G147600 Carya illinoinensis HOM05D007399 ORTHO05D009341 2.2e-28 130.2 160 46.9
arahy.Tifrunner.gnm1.ann1.5JJB2W Arachis hypogaea HOM05D007399 ORTHO05D009341 2.9e-28 129.8 169 45.6
FAN27G2185 Fragaria x ananassa HOM05D007399 ORTHO05D009341 2.9e-28 129.8 215 40.9
GSVIVG01003279001 Vitis vinifera HOM05D007399 ORTHO05D009341 2.9e-28 129.8 111 55.9
CANSAT01G2134 Cannabis sativa HOM05D007399 ORTHO05D009341 4.9e-28 129.0 201 40.8
FAN24G1833 Fragaria x ananassa HOM05D007399 ORTHO05D009341 1.4e-27 127.5 214 40.2
Actinidia09475 Actinidia chinensis HOM05D007399 ORTHO05D009341 2.4e-27 126.7 195 40.0
Migut.D02494 Erythranthe guttata HOM05D007399 ORTHO05D009341 4.1e-27 125.9 220 40.0
CSS0020487 Camellia sinensis var. sinensis HOM05D007399 ORTHO05D009341 5.4e-27 125.6 135 48.1
ClCG09G008880 Citrullus lanatus HOM05D007399 ORTHO05D009341 9.2e-27 124.8 228 40.8
Psat4g199960 Pisum sativum HOM05D007399 ORTHO05D009341 9.2e-27 124.8 231 39.4
QL09p053062 Quercus lobata HOM05D007399 ORTHO05D009341 9.2e-27 124.8 104 55.8
AUR62008936 Chenopodium quinoa HOM05D007399 ORTHO05D009341 2.0e-26 123.6 189 39.7
DCAR_000523 Daucus carota HOM05D007399 ORTHO05D009341 2.7e-26 123.2 190 38.4
MELO3C021053.2 Cucumis melo HOM05D007399 ORTHO05D009341 1.3e-25 120.9 227 39.2
QL09p053453 Quercus lobata HOM05D007399 ORTHO05D009341 2.3e-25 120.2 175 41.1
CsaV3_7G026010 Cucumis sativus L. HOM05D007399 ORTHO05D009341 3.0e-25 119.8 227 39.6
CANSAT01G0413 Cannabis sativa HOM05D007399 ORTHO05D009341 5.0e-25 119.0 187 40.6
PGSC0003DMG401023104 Solanum tuberosum HOM05D007399 ORTHO05D009341 6.6e-25 118.6 231 37.7
EL10Ac7g17870 Beta vulgaris HOM05D007399 ORTHO05D009341 1.5e-24 117.5 147 41.5
CANSAT01G1231 Cannabis sativa HOM05D007399 ORTHO05D009341 2.5e-24 116.7 110 54.5
Lj2A1128G40 Lonicera japonica HOM05D007399 ORTHO05D009341 2.5e-24 116.7 170 42.9
PSO357G0666 Papaver somniferum HOM05D007399 ORTHO05D009341 3.3e-24 116.3 241 34.4
SalBow6G3187 Salvia bowleyana HOM05D007399 ORTHO05D009341 3.3e-24 116.3 199 39.7
SalBow6G3685 Salvia bowleyana HOM05D007399 ORTHO05D009341 3.3e-24 116.3 199 39.7
Sed0009642 Sechium edule HOM05D007399 ORTHO05D009341 3.3e-24 116.3 230 39.6
PSO170G3887 Papaver somniferum HOM05D007399 ORTHO05D009341 9.5e-24 114.8 241 34.4
Solyc09g059950.3 Solanum lycopersicum HOM05D007399 ORTHO05D009341 9.5e-24 114.8 220 35.5
Sc24g0003500 Simmondsia chinensis HOM05D007399 ORTHO05D009341 1.6e-23 114.0 172 40.1
Sopen09g023130 Solanum pennellii HOM05D007399 ORTHO05D009341 1.6e-23 114.0 225 37.3
CANSAT01G2481 Cannabis sativa HOM05D007399 ORTHO05D009341 6.2e-23 112.1 157 41.4
CDE06G2632 Ceratophyllum demersum HOM05D007399 ORTHO05D009341 6.2e-23 112.1 87 63.2
SHI28622 Sapria himalayana HOM05D000002 ORTHO05D000001 2.3e-22 110.2 99 49.5
Actinidia23717 Actinidia chinensis HOM05D007399 ORTHO05D009341 3.5e-18 96.3 232 32.3
Hund20426 Selenicereus undatus HOM05D007399 ORTHO05D009341 3.0e-17 93.2 84 54.8
SEGI_10803 Sequoiadendron giganteum HOM05D007399 ORTHO05D009341 7.3e-16 88.6 153 34.6
ATR0609G108 Amborella trichopoda HOM05D007399 ORTHO05D009341 4.4e-13 79.3 114 39.5
Os01g0918400 Oryza sativa ssp. japonica HOM05D007399 ORTHO05D009341 2.9e-12 76.6 64 53.1
HPP92_011779 Vanilla planifolia HOM05D007399 ORTHO05D009341 4.1e-11 72.8 199 29.6
Zm00001eb364650 Zea mays HOM05D007399 ORTHO05D009341 1.3e-09 67.8 64 45.3
Aqoxy5G00011 Aquilegia oxysepala HOM05D007399 ORTHO05D009341 4.7e-07 59.3 194 29.4


User provided reference genes

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