Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g29730 Brassica carinata HOM05D006091 ORTHO05D006421 1.6e-48 195.7 93 100.0
C05p59890 Brassica napus HOM05D006091 ORTHO05D006421 6.3e-45 183.7 88 98.9
BolC5t34643H Brassica oleracea HOM05D006091 ORTHO05D006421 6.3e-45 183.7 88 98.9
A05p40780 Brassica napus HOM05D006091 ORTHO05D006421 1.4e-44 182.6 88 97.7
BraA05t22809Z Brassica rapa HOM05D006091 ORTHO05D006421 1.4e-44 182.6 88 97.7
Thhalv10019992m.g Eutrema salsugineum HOM05D006091 ORTHO05D006421 7.0e-44 180.3 88 96.6
Sp3g06320 Schrenkiella parvula HOM05D006091 ORTHO05D006421 9.2e-44 179.9 88 95.5
AL3G18700 Arabidopsis lyrata HOM05D006091 ORTHO05D006421 3.5e-43 177.9 88 93.2
AT3G07400 Arabidopsis thaliana HOM05D006091 ORTHO05D006421 3.5e-43 177.9 88 93.2
Carub.0003s0694 Capsella rubella HOM05D006091 ORTHO05D006421 1.7e-42 175.6 88 90.9
Aa31LG5G17970 Aethionema arabicum HOM05D006091 ORTHO05D006421 4.0e-39 164.5 88 86.4
THA.LOC104802652 Tarenaya hassleriana HOM05D006091 ORTHO05D006421 6.8e-39 163.7 88 85.2
Ciclev10030603m.g Citrus clementina HOM05D006091 ORTHO05D006421 2.5e-33 145.2 88 72.7
Cpa.g.sc8.88 Carica papaya HOM05D006091 ORTHO05D006421 4.3e-33 144.4 88 71.6
Atru.chr6.1598 Acer truncatum HOM05D006091 ORTHO05D006421 7.3e-33 143.7 88 71.6
CiPaw.13G053400 Carya illinoinensis HOM05D006091 ORTHO05D006421 1.2e-32 142.9 88 76.1
Gohir.A11G141600 Gossypium hirsutum HOM05D006091 ORTHO05D006421 8.1e-32 140.2 90 68.9
Gohir.D11G147900 Gossypium hirsutum HOM05D006091 ORTHO05D006421 8.1e-32 140.2 90 68.9
Gorai.007G158500 Gossypium raimondii HOM05D006091 ORTHO05D006421 8.1e-32 140.2 90 68.9
Potri.002G249400 Populus trichocarpa HOM05D006091 ORTHO05D006421 1.1e-31 139.8 89 71.9
Thecc.01G213100 Theobroma cacao HOM05D006091 ORTHO05D006421 1.1e-31 139.8 90 68.9
COL.COLO4_04501 Corchorus olitorius HOM05D006091 ORTHO05D006421 2.0e-30 135.6 90 65.6
TWI75G0482 Tripterygium wilfordii HOM05D006091 ORTHO05D006421 2.0e-30 135.6 88 65.9
MELO3C021115.2 Cucumis melo HOM05D006091 ORTHO05D006421 2.6e-30 135.2 88 68.2
CsaV3_7G026640 Cucumis sativus L. HOM05D006091 ORTHO05D006421 7.5e-30 133.7 88 67.0
Gohir.A07G090700 Gossypium hirsutum HOM05D006091 ORTHO05D006421 2.9e-29 131.7 90 64.4
Gohir.D07G095400 Gossypium hirsutum HOM05D006091 ORTHO05D006421 2.9e-29 131.7 90 64.4
Gorai.001G102700 Gossypium raimondii HOM05D006091 ORTHO05D006421 2.9e-29 131.7 90 64.4
Eucgr.H00736 Eucalyptus grandis HOM05D006091 ORTHO05D006421 3.7e-29 131.3 91 64.8
CANSAT01G2939 Cannabis sativa HOM05D006091 ORTHO05D006421 4.9e-29 131.0 89 65.2
MD05G1163900 Malus domestica HOM05D006091 ORTHO05D006421 5.4e-28 127.5 90 64.4
GSVIVG01002194001 Vitis vinifera HOM05D006091 ORTHO05D006421 5.4e-28 127.5 88 64.8
Prupe.8G192400 Prunus persica HOM05D006091 ORTHO05D006421 2.1e-27 125.6 90 64.4
Ca_23191_v3 Cicer arietinum L. HOM05D006091 ORTHO05D006421 2.7e-27 125.2 88 64.8
arahy.Tifrunner.gnm1.ann1.ZLM6RM Arachis hypogaea HOM05D006091 ORTHO05D006421 6.0e-27 124.0 88 65.9
RcHm_v2.0_Chr6g0283291 Rosa chinensis HOM05D006091 ORTHO05D006421 1.0e-26 123.2 92 64.1
CiPaw.14G042600 Carya illinoinensis HOM05D006091 ORTHO05D006421 1.3e-26 122.9 87 67.8
arahy.Tifrunner.gnm1.ann1.23KP9R Arachis hypogaea HOM05D006091 ORTHO05D006421 2.3e-26 122.1 88 64.8
Psat0s4060g0040 Pisum sativum HOM05D006091 ORTHO05D006421 2.3e-26 122.1 88 63.6
FAN15G2626 Fragaria x ananassa HOM05D006091 ORTHO05D006421 6.6e-26 120.6 91 63.7
Medtr8g011610 Medicago truncatula HOM05D006091 ORTHO05D006421 6.6e-26 120.6 88 63.6
TPR.G1980 Trifolium pratense HOM05D006091 ORTHO05D006421 6.6e-26 120.6 89 65.2
FvH4_2g17990 Fragaria vesca HOM05D006091 ORTHO05D006421 8.6e-26 120.2 91 63.7
FAN24G1597 Fragaria x ananassa HOM05D006091 ORTHO05D006421 8.6e-26 120.2 91 63.7
QL09p045696 Quercus lobata HOM05D006091 ORTHO05D006421 1.1e-25 119.8 90 62.2
FAN27G2037 Fragaria x ananassa HOM05D006091 ORTHO05D006421 2.5e-25 118.6 91 62.6
Lalb_Chr13g0291021 Lupinus albus HOM05D006091 ORTHO05D006421 1.6e-24 115.9 88 59.1
Lj3g0004892 Lotus japonicus HOM05D006091 ORTHO05D006421 3.6e-24 114.8 88 59.1
Sed0015233 Sechium edule HOM05D006091 ORTHO05D006421 3.6e-24 114.8 89 59.6
Lj2C1118G19 Lonicera japonica HOM05D006091 ORTHO05D006421 8.1e-24 113.6 90 65.6
MD10G1153600 Malus domestica HOM05D006091 ORTHO05D006421 8.1e-24 113.6 89 59.6
Actinidia23366 Actinidia chinensis HOM05D006091 ORTHO05D006421 1.1e-23 113.2 90 63.3
RcHm_v2.0_Chr6g0283341 Rosa chinensis HOM05D006091 ORTHO05D006421 1.4e-23 112.8 92 58.7
ECA236G3389 Erigeron canadensis HOM05D006091 ORTHO05D006421 4.0e-23 111.3 90 58.9
TAR362G0363 Trochodendron aralioides HOM05D006091 ORTHO05D006421 4.0e-23 111.3 88 61.4
Hma1.2p1_2027F.1_g311640 Hydrangea macrophylla HOM05D006091 ORTHO05D006421 5.2e-23 110.9 90 61.1
CSS0012975 Camellia sinensis var. sinensis HOM05D006091 ORTHO05D006421 6.8e-23 110.5 90 61.1
Nitab4.5_0000038g0010 Nicotiana tabacum HOM05D006091 ORTHO05D006421 8.9e-23 110.2 90 61.1
Nitab4.5_0009574g0010 Nicotiana tabacum HOM05D006091 ORTHO05D006421 8.9e-23 110.2 90 61.1
ECA246G1360 Erigeron canadensis HOM05D006091 ORTHO05D006421 1.2e-22 109.8 90 58.9
MBI07_g21346_MAGBIO Magnolia biondii HOM05D006091 ORTHO05D006421 1.2e-22 109.8 89 62.9
Dinv12805 Davidia involucrata HOM05D006091 ORTHO05D006421 2.0e-22 109.0 90 61.1
MSTRG.17976 Avicennia marina HOM05D006091 ORTHO05D006421 5.8e-22 107.5 90 56.7
Sc05g0001800 Simmondsia chinensis HOM05D006091 ORTHO05D006421 5.8e-22 107.5 90 60.0
Cc01_g16310 Coffea canephora HOM05D006091 ORTHO05D006421 9.9e-22 106.7 93 55.9
vmacro02807 Vaccinium macrocarpon HOM05D006091 ORTHO05D006421 9.9e-22 106.7 92 59.8
Glyma.03G089000 Glycine max HOM05D006091 ORTHO05D006421 2.2e-21 105.5 92 60.9
AUR62001194 Chenopodium quinoa HOM05D006091 ORTHO05D006421 3.7e-21 104.8 93 54.8
Oeu003643.1 Olea europaea HOM05D006091 ORTHO05D006421 4.9e-21 104.4 90 57.8
HanXRQChr04g0107951 Helianthus annuus HOM05D006091 ORTHO05D006421 8.4e-21 103.6 90 54.4
CAN.G99.1 Capsicum annuum HOM05D006091 ORTHO05D006421 1.1e-20 103.2 90 57.8
Phvul.010G030600 Phaseolus vulgaris HOM05D006091 ORTHO05D006421 1.4e-20 102.8 92 58.7
EL10Ac7g17981 Beta vulgaris HOM05D006091 ORTHO05D006421 1.9e-20 102.4 92 52.2
PSO017G2440 Papaver somniferum HOM05D006091 ORTHO05D006421 2.4e-20 102.1 90 57.8
PSO675G5723 Papaver somniferum HOM05D006091 ORTHO05D006421 2.4e-20 102.1 90 57.8
SGA_v2.0_scaffold77G25288 Striga asiatica HOM05D006091 ORTHO05D006421 3.2e-20 101.7 91 57.1
Lsat_1_v5_gn_8_88561 Lactuca sativa HOM05D006091 ORTHO05D006421 4.1e-20 101.3 90 55.6
Solyc09g056350.4 Solanum lycopersicum HOM05D006091 ORTHO05D006421 7.1e-20 100.5 90 55.6
Sopen09g020500 Solanum pennellii HOM05D006091 ORTHO05D006421 7.1e-20 100.5 90 55.6
Aqoxy2G03964 Aquilegia oxysepala HOM05D006091 ORTHO05D006421 1.2e-19 99.8 81 55.6
Rhsim13G0051700 Rhododendron simsii HOM05D006091 ORTHO05D006421 1.6e-19 99.4 92 57.6
Migut.N00655 Erythranthe guttata HOM05D006091 ORTHO05D006421 2.1e-19 99.0 90 53.3
Ah.08g218720 Amaranthus hybridus HOM05D006091 ORTHO05D006421 1.3e-18 96.3 92 52.2
Hund18485 Selenicereus undatus HOM05D006091 ORTHO05D006421 3.9e-18 94.7 92 51.1
ATR0609G072 Amborella trichopoda HOM05D006091 ORTHO05D006421 1.6e-16 89.4 90 47.8
AUR62022134 Chenopodium quinoa HOM05D006091 ORTHO05D006421 2.8e-16 88.6 57 70.2
DCAR_004762 Daucus carota HOM05D006091 ORTHO05D006421 1.1e-15 86.7 93 48.4
Peaxi162Scf00054g00172 Petunia axillaris HOM05D006091 ORTHO05D006421 1.1e-15 86.7 71 63.4
CDE05G1763 Ceratophyllum demersum HOM05D006091 ORTHO05D006421 9.9e-14 80.1 88 45.5
HPP92_009934 Vanilla planifolia HOM05D006091 ORTHO05D006421 2.9e-13 78.6 112 42.0
Mapoly0057s0040 Marchantia polymorpha HOM05D006091 ORTHO05D006421 1.1e-12 76.6 92 43.5
Zm00001eb202960 Zea mays HOM05D006091 ORTHO05D006421 3.2e-12 75.1 96 44.8
unitig_699.g19751 Utricularia gibba HOM05D006091 ORTHO05D006421 3.6e-08 61.6 47 57.4
vmacro06989 Vaccinium macrocarpon HOM05D006091 ORTHO05D006421 6.2e-08 60.8 53 54.7
SMO117G0101 Selaginella moellendorffii HOM05D006091 ORTHO05D006421 2.0e-06 55.8 66 40.9
SEGI_30787 Sequoiadendron giganteum HOM05D006091 ORTHO05D006421 2.6e-06 55.5 88 39.8


User provided reference genes

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