Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g29726 Brassica carinata HOM05D006043 ORTHO05D007309 9.7e-78 293.5 159 100.0
A05p39030 Brassica napus HOM05D006043 ORTHO05D007309 4.2e-73 278.1 155 93.5
C05p58050 Brassica napus HOM05D002004 ORTHO05D002089 1.2e-72 276.6 155 92.3
BolC5t34462H Brassica oleracea HOM05D006043 ORTHO05D007309 1.2e-72 276.6 155 92.3
BraA05t22694Z Brassica rapa HOM05D006043 ORTHO05D007309 1.6e-72 276.2 155 92.9
Carub.0003s0912 Capsella rubella HOM05D006043 ORTHO05D007309 2.1e-64 249.2 155 83.9
Sp3g08330 Schrenkiella parvula HOM05D006043 ORTHO05D007309 2.7e-64 248.8 155 85.8
AT3G10020 Arabidopsis thaliana HOM05D006043 ORTHO05D007309 6.1e-64 247.7 154 83.1
AL3G21330 Arabidopsis lyrata HOM05D006043 ORTHO05D007309 3.0e-63 245.4 155 81.9
Thhalv10021699m.g Eutrema salsugineum HOM05D006043 ORTHO05D007309 5.2e-63 244.6 155 83.2
BcaB03g11578 Brassica carinata HOM05D006043 ORTHO05D007309 1.5e-62 243.0 157 82.8
CARHR084520 Cardamine hirsuta HOM05D006043 ORTHO05D007309 2.8e-61 238.8 152 81.6
Aa31LG3G2550 Aethionema arabicum HOM05D006043 ORTHO05D007309 3.7e-61 238.4 154 79.2
BraA03t12747Z Brassica rapa HOM05D006043 ORTHO05D007309 4.9e-61 238.0 156 81.4
BcaC01g04256 Brassica carinata HOM05D006043 ORTHO05D007309 2.4e-60 235.7 156 80.8
C03p43400 Brassica napus HOM05D006043 ORTHO05D007309 9.1e-60 233.8 156 80.1
A03p35730 Brassica napus HOM05D006043 ORTHO05D007309 3.3e-57 225.3 149 81.2
BolC3t16611H Brassica oleracea HOM05D006043 ORTHO05D007309 2.3e-55 219.2 156 78.8
BolC8t51238H Brassica oleracea HOM05D006043 ORTHO05D007309 5.6e-49 198.0 141 75.9
THA.LOC104816380 Tarenaya hassleriana HOM05D006043 ORTHO05D007309 2.1e-40 169.5 135 65.9
Cpa.g.sc5.89 Carica papaya HOM05D006043 ORTHO05D007309 2.4e-36 156.0 149 59.1
Manes.08G019800 Manihot esculenta HOM05D006043 ORTHO05D007309 3.5e-35 152.1 150 57.3
Peaxi162Scf00412g00073 Petunia axillaris HOM05D006043 ORTHO05D007309 3.5e-35 152.1 148 55.4
Glyma.03G190100 Glycine max HOM05D006043 ORTHO05D007309 3.0e-34 149.1 151 59.6
Atru.chr8.1654 Acer truncatum HOM05D006043 ORTHO05D007309 3.9e-34 148.7 150 59.3
C08p36560 Brassica napus HOM05D006043 ORTHO05D007309 3.3e-33 145.6 107 72.9
Rhsim06G0171100 Rhododendron simsii HOM05D006043 ORTHO05D007309 7.3e-33 144.4 150 53.3
FAN02G0054 Fragaria x ananassa HOM05D006043 ORTHO05D007309 1.6e-32 143.3 156 54.5
Ciclev10013017m.g Citrus clementina HOM05D006043 ORTHO05D007309 2.8e-32 142.5 152 55.3
SGA_v2.0_scaffold40G15419 Striga asiatica HOM05D006043 ORTHO05D007309 2.8e-32 142.5 148 60.1
Prupe.7G119300 Prunus persica HOM05D006043 ORTHO05D007309 4.7e-32 141.7 148 56.8
PGSC0003DMG400002724 Solanum tuberosum HOM05D006043 ORTHO05D007309 4.7e-32 141.7 154 51.9
Sc07g0005350 Simmondsia chinensis HOM05D006043 ORTHO05D007309 1.1e-31 140.6 151 55.6
BcaC03g16179 Brassica carinata HOM05D006043 ORTHO05D007309 1.8e-31 139.8 107 71.0
Glyma.19G190400 Glycine max HOM05D006043 ORTHO05D007309 1.8e-31 139.8 150 54.7
Cc06_g05110 Coffea canephora HOM05D006043 ORTHO05D007309 2.3e-31 139.4 146 52.7
Cfa016525 Carpinus fangiana HOM05D006043 ORTHO05D007309 3.1e-31 139.0 150 54.0
FvH4_6g17700 Fragaria vesca HOM05D006043 ORTHO05D007309 4.0e-31 138.7 154 55.8
MD14G1014200 Malus domestica HOM05D006043 ORTHO05D007309 4.0e-31 138.7 146 56.8
Oeu030483.1 Olea europaea HOM05D006043 ORTHO05D007309 4.0e-31 138.7 147 55.8
C02p39530 Brassica napus HOM05D006043 ORTHO05D007309 5.2e-31 138.3 107 70.1
BolC2t09966H Brassica oleracea HOM05D006043 ORTHO05D007309 5.2e-31 138.3 107 70.1
Lalb_Chr20g0112261 Lupinus albus HOM05D006043 ORTHO05D007309 5.2e-31 138.3 149 54.4
CANSAT80G1206 Cannabis sativa HOM05D006043 ORTHO05D007309 6.8e-31 137.9 143 56.6
Lj1g0027910 Lotus japonicus HOM05D006043 ORTHO05D007309 6.8e-31 137.9 150 53.3
Haze_19524 Corylus avellana HOM05D006043 ORTHO05D007309 8.9e-31 137.5 151 55.6
Cc00_g32800 Coffea canephora HOM05D006043 ORTHO05D007309 1.2e-30 137.1 146 52.1
Gorai.006G158600 Gossypium raimondii HOM05D006043 ORTHO05D007309 1.2e-30 137.1 151 55.0
Medtr7g103520 Medicago truncatula HOM05D006043 ORTHO05D007309 1.2e-30 137.1 153 51.6
COL.COLO4_29832 Corchorus olitorius HOM05D006043 ORTHO05D007309 1.5e-30 136.7 150 57.3
vmacro12136 Vaccinium macrocarpon HOM05D006043 ORTHO05D007309 2.0e-30 136.3 151 53.0
Phvul.001G185700 Phaseolus vulgaris HOM05D006043 ORTHO05D007309 3.4e-30 135.6 150 51.3
CSS0040940 Camellia sinensis var. sinensis HOM05D006043 ORTHO05D007309 4.4e-30 135.2 154 51.3
HanXRQChr09g0259401 Helianthus annuus HOM05D006043 ORTHO05D007309 4.4e-30 135.2 149 49.7
Duzib106G1072 Durio zibethinus HOM05D006043 ORTHO05D007309 5.8e-30 134.8 149 55.0
RcHm_v2.0_Chr3g0471911 Rosa chinensis HOM05D006043 ORTHO05D007309 5.8e-30 134.8 154 53.9
Gohir.D09G138000 Gossypium hirsutum HOM05D006043 ORTHO05D007309 9.9e-30 134.0 151 54.3
Ca_08959_v3 Cicer arietinum L. HOM05D006043 ORTHO05D007309 1.3e-29 133.7 151 53.0
Dinv21268 Davidia involucrata HOM05D006043 ORTHO05D007309 1.3e-29 133.7 146 58.9
VMungo1383G3657 Vigna mungo HOM05D006043 ORTHO05D007309 1.3e-29 133.7 150 51.3
CAN.G824.34 Capsicum annuum HOM05D006043 ORTHO05D007309 1.7e-29 133.3 123 56.1
Eucgr.K02399 Eucalyptus grandis HOM05D006043 ORTHO05D007309 2.2e-29 132.9 149 51.0
Eucgr.K02384 Eucalyptus grandis HOM05D006043 ORTHO05D007309 2.9e-29 132.5 149 51.0
QL07p040748 Quercus lobata HOM05D006043 ORTHO05D007309 3.7e-29 132.1 150 55.3
Eucgr.K02410 Eucalyptus grandis HOM05D006043 ORTHO05D007309 4.9e-29 131.7 149 50.3
Gohir.A04G066428 Gossypium hirsutum HOM05D006043 ORTHO05D007309 4.9e-29 131.7 156 56.4
Potri.013G014300 Populus trichocarpa HOM05D006043 ORTHO05D007309 8.4e-29 131.0 154 53.9
CiPaw.10G004600 Carya illinoinensis HOM05D006043 ORTHO05D007309 1.1e-28 130.6 151 50.3
MELO3C009427.2 Cucumis melo HOM05D006043 ORTHO05D007309 1.1e-28 130.6 149 49.7
Gohir.D04G105000 Gossypium hirsutum HOM05D006043 ORTHO05D007309 1.1e-28 130.6 156 55.8
Gorai.009G408700 Gossypium raimondii HOM05D006043 ORTHO05D007309 1.1e-28 130.6 156 55.8
CsaV3_3G036730 Cucumis sativus L. HOM05D006043 ORTHO05D007309 1.4e-28 130.2 149 49.7
Eucgr.K02389 Eucalyptus grandis HOM05D006043 ORTHO05D007309 2.4e-28 129.4 149 49.7
PSO384G2483 Papaver somniferum HOM05D006043 ORTHO05D007309 2.4e-28 129.4 158 49.4
MD12G1016000 Malus domestica HOM05D006043 ORTHO05D007309 5.4e-28 128.3 150 54.7
Cc00_g05260 Coffea canephora HOM05D006043 ORTHO05D007309 9.2e-28 127.5 146 50.7
Nitab4.5_0010125g0040 Nicotiana tabacum HOM05D006043 ORTHO05D007309 9.2e-28 127.5 124 54.0
TPR.G7024 Trifolium pratense HOM05D006043 ORTHO05D007309 9.2e-28 127.5 149 51.7
Aqoxy1G00961 Aquilegia oxysepala HOM05D006043 ORTHO05D007309 1.6e-27 126.7 154 49.4
EL10Ac7g17005 Beta vulgaris HOM05D006043 ORTHO05D007309 2.1e-27 126.3 152 48.7
Solyc09g008970.1 Solanum lycopersicum HOM05D006043 ORTHO05D007309 4.6e-27 125.2 149 49.7
ClCG10G019450 Citrullus lanatus HOM05D006043 ORTHO05D007309 6.0e-27 124.8 149 49.0
SalBow3G1044 Salvia bowleyana HOM05D006043 ORTHO05D007309 1.0e-26 124.0 147 49.0
Sopen09g003740 Solanum pennellii HOM05D006043 ORTHO05D007309 1.0e-26 124.0 150 48.0
Gohir.A09G136312 Gossypium hirsutum HOM05D006043 ORTHO05D007309 1.3e-26 123.6 161 49.7
Nitab4.5_0010125g0030 Nicotiana tabacum HOM05D006043 ORTHO05D007309 2.3e-26 122.9 153 47.7
Sopen09g003730 Solanum pennellii HOM05D006043 ORTHO05D007309 2.3e-26 122.9 149 49.7
Oeu040545.1 Olea europaea HOM05D006043 ORTHO05D007309 3.0e-26 122.5 150 48.0
Eucgr.A01560 Eucalyptus grandis HOM05D006043 ORTHO05D007309 3.9e-26 122.1 135 48.9
Peaxi162Scf00412g00063 Petunia axillaris HOM05D006043 ORTHO05D007309 3.9e-26 122.1 150 50.0
Solyc09g008980.2 Solanum lycopersicum HOM05D006043 ORTHO05D007309 6.6e-26 121.3 149 46.3
TWI53G1797 Tripterygium wilfordii HOM05D006043 ORTHO05D007309 6.6e-26 121.3 105 61.0
Lsat_1_v5_gn_2_22321 Lactuca sativa HOM05D006043 ORTHO05D007309 8.6e-26 120.9 141 52.5
PGR004G1627 Punica granatum HOM05D006043 ORTHO05D007309 8.6e-26 120.9 134 50.7
Duzib093G0521 Durio zibethinus HOM05D006043 ORTHO05D007309 1.5e-25 120.2 149 53.7
Ah.08g211020 Amaranthus hybridus HOM05D006043 ORTHO05D007309 2.5e-25 119.4 152 46.7
DCAR_009167 Daucus carota HOM05D006043 ORTHO05D007309 2.5e-25 119.4 146 49.3
ECA126G0006 Erigeron canadensis HOM05D006043 ORTHO05D007309 4.3e-25 118.6 100 55.0
Nn2g13971 Nelumbo nucifera HOM05D006043 ORTHO05D007309 1.6e-24 116.7 111 55.0
PGSC0003DMG400002723 Solanum tuberosum HOM05D006043 ORTHO05D007309 2.1e-24 116.3 150 47.3
Psat3g036320 Pisum sativum HOM05D006043 ORTHO05D007309 8.1e-24 114.4 107 55.1
Zm00001eb406490 Zea mays HOM05D006043 ORTHO05D007309 1.8e-23 113.2 150 46.7
MBI01_g32535_MAGBIO Magnolia biondii HOM05D006043 ORTHO05D007309 4.0e-23 112.1 141 49.6
Nitab4.5_0001922g0090 Nicotiana tabacum HOM05D006043 ORTHO05D007309 5.2e-23 111.7 111 53.2
THA.LOC104823222 Tarenaya hassleriana HOM05D006043 ORTHO05D007309 6.8e-23 111.3 75 74.7
Nn6g35076 Nelumbo nucifera HOM05D006043 ORTHO05D007309 4.4e-22 108.6 137 49.6
Os11g0149200 Oryza sativa ssp. japonica HOM05D006043 ORTHO05D007309 4.4e-22 108.6 146 47.9
Os12g0147200 Oryza sativa ssp. japonica HOM05D006043 ORTHO05D007309 6.4e-21 104.8 140 47.1
Aqoxy2G01470 Aquilegia oxysepala HOM05D006043 ORTHO05D007309 4.2e-20 102.1 133 46.6
Lj4P368T6 Lonicera japonica HOM05D006043 ORTHO05D007309 7.1e-20 101.3 78 61.5
Lj2P127T74 Lonicera japonica HOM05D006043 ORTHO05D007309 2.1e-19 99.8 139 45.3
Sed0027852 Sechium edule HOM05D006043 ORTHO05D007309 2.1e-19 99.8 149 43.0
Thecc.05G079900 Theobroma cacao HOM05D006043 ORTHO05D007309 3.0e-18 95.9 149 46.3
HPP92_021571 Vanilla planifolia HOM05D006043 ORTHO05D007309 9.6e-17 90.9 134 41.8
TWI13G0012 Tripterygium wilfordii HOM05D006043 ORTHO05D007309 6.2e-16 88.2 110 52.7
TWI74G0769 Tripterygium wilfordii HOM05D006043 ORTHO05D007309 6.2e-16 88.2 110 52.7
AUR62033593 Chenopodium quinoa HOM05D006043 ORTHO05D007309 3.1e-15 85.9 148 40.5
TAR334G0001 Trochodendron aralioides HOM05D006043 ORTHO05D007309 2.9e-13 79.3 85 57.6
TAR369G1076 Trochodendron aralioides HOM05D006043 ORTHO05D007309 2.9e-13 79.3 85 57.6
Prupe.7G091800 Prunus persica HOM05D006043 ORTHO05D007309 7.1e-12 74.7 81 56.8
AUR62037886 Chenopodium quinoa HOM05D006043 ORTHO05D007309 5.6e-09 65.1 151 34.4
SEGI_20897 Sequoiadendron giganteum HOM05D006043 ORTHO05D007309 6.2e-08 61.6 116 40.5


User provided reference genes

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