Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g29665 Brassica carinata HOM05D008883 ORTHO05D011075 1.5e-121 439.5 215 100.0
C08p54100 Brassica napus HOM05D008883 ORTHO05D011075 4.3e-121 438.0 215 99.5
BolC8t52918H Brassica oleracea HOM05D008883 ORTHO05D011075 4.3e-121 438.0 215 99.5
BcaB08g35019 Brassica carinata HOM05D008883 ORTHO05D011075 1.0e-93 347.1 213 76.5
BcaB06g27532 Brassica carinata HOM05D008883 ORTHO05D011075 1.1e-79 300.4 191 75.9
A09p69280 Brassica napus HOM05D008883 ORTHO05D011075 9.4e-68 260.8 132 99.2
SpUn0486_0010 Schrenkiella parvula HOM05D008883 ORTHO05D011075 1.8e-66 256.5 214 57.5
BcaC04g20437 Brassica carinata HOM05D008883 ORTHO05D011075 4.9e-56 221.9 111 100.0
Sp5g18780 Schrenkiella parvula HOM05D008883 ORTHO05D011075 6.4e-56 221.5 177 59.3
SpUn1299_0010 Schrenkiella parvula HOM05D008883 ORTHO05D011075 6.4e-56 221.5 178 58.4
SpUn0003_0120 Schrenkiella parvula HOM05D008883 ORTHO05D011075 1.1e-55 220.7 183 60.7
SpUn1191_0010 Schrenkiella parvula HOM05D008883 ORTHO05D011075 7.0e-55 218.0 177 57.1
BcaC04g20436 Brassica carinata HOM05D008883 ORTHO05D011075 2.2e-48 196.4 204 47.5
A09p69290 Brassica napus HOM05D008883 ORTHO05D011075 4.4e-41 172.2 204 44.1
BolC8t52919H Brassica oleracea HOM05D008883 ORTHO05D011075 4.4e-41 172.2 204 44.1
Sp3g24800 Schrenkiella parvula HOM05D008883 ORTHO05D011075 1.9e-39 166.8 187 47.6
Sp5g18640 Schrenkiella parvula HOM05D008883 ORTHO05D011075 1.9e-39 166.8 195 46.2
BcaC04g20434 Brassica carinata HOM05D008883 ORTHO05D011075 3.2e-39 166.0 204 42.6
CARHR158160 Cardamine hirsuta HOM05D008883 ORTHO05D011075 4.1e-39 165.6 172 47.7
CARHR108020 Cardamine hirsuta HOM05D008883 ORTHO05D011075 1.2e-38 164.1 159 50.9
A09p69320 Brassica napus HOM05D008883 ORTHO05D011075 1.6e-38 163.7 204 42.2
BolC8t52922H Brassica oleracea HOM05D008883 ORTHO05D011075 1.6e-38 163.7 204 42.2
Sp7g07010 Schrenkiella parvula HOM05D008883 ORTHO05D011075 5.2e-34 148.7 211 39.3
SpUn0002_0140 Schrenkiella parvula HOM05D008883 ORTHO05D011075 4.1e-31 139.0 104 59.6
Sp7g05080 Schrenkiella parvula HOM05D008883 ORTHO05D011075 8.1e-27 124.8 147 46.3
C08p54140 Brassica napus HOM05D008883 ORTHO05D011075 2.0e-25 120.2 146 41.1
BcaC05g29663 Brassica carinata HOM05D008883 ORTHO05D011075 3.4e-25 119.4 191 37.7
SpUn0011_0050 Schrenkiella parvula HOM05D008883 ORTHO05D011075 9.9e-25 117.9 139 44.6
SpUn0052_0010 Schrenkiella parvula HOM05D008883 ORTHO05D011075 9.9e-25 117.9 139 44.6
SpUn0057_0050 Schrenkiella parvula HOM05D008883 ORTHO05D011075 9.9e-25 117.9 139 44.6
SpUn0001_0500 Schrenkiella parvula HOM05D008883 ORTHO05D011075 3.5e-22 109.4 188 39.4
Sp1g33150 Schrenkiella parvula HOM05D008883 ORTHO05D011075 3.3e-20 102.8 135 39.3
BcaC05g29664 Brassica carinata HOM05D008883 ORTHO05D011075 1.3e-19 100.9 87 50.6
BcaB08g35020 Brassica carinata HOM05D008883 ORTHO05D011075 6.9e-18 95.1 109 41.3
Sp7g05660 Schrenkiella parvula HOM05D008883 ORTHO05D011075 1.1e-15 87.8 147 38.1
Sp6g12610 Schrenkiella parvula HOM05D008883 ORTHO05D011075 2.4e-15 86.7 147 35.4
SpUn0015_0030 Schrenkiella parvula HOM05D008883 ORTHO05D011075 2.4e-15 86.7 147 35.4
SpUn0039_0060 Schrenkiella parvula HOM05D008883 ORTHO05D011075 2.4e-15 86.7 147 35.4
CiPaw.06G099700 Carya illinoinensis HOM05D002915 ORTHO05D003004 4.2e-15 85.9 222 27.9
BraA07t28801Z Brassica rapa HOM05D003839 ORTHO05D003352 7.9e-14 81.6 202 25.7
A09p20270 Brassica napus HOM05D003839 ORTHO05D003352 2.3e-13 80.1 202 24.8
C09p33270 Brassica napus HOM05D008292 ORTHO05D003352 3.9e-13 79.3 189 28.0
BolC9t56163H Brassica oleracea HOM05D008292 ORTHO05D003352 3.9e-13 79.3 189 28.0
Thhalv10005434m.g Eutrema salsugineum HOM05D003839 ORTHO05D003352 6.7e-13 78.6 211 25.1
BcaB04g16904 Brassica carinata HOM05D008292 ORTHO05D003352 8.7e-13 78.2 196 28.1
C09p21410 Brassica napus HOM05D003839 ORTHO05D003352 8.7e-13 78.2 198 24.7
A01p17040 Brassica napus HOM05D008292 ORTHO05D003352 1.9e-12 77.0 199 29.1
BraA09t39508Z Brassica rapa HOM05D008292 ORTHO05D003352 1.9e-12 77.0 199 29.1
BraA08t34531Z Brassica rapa HOM05D008292 ORTHO05D003352 2.5e-12 76.6 152 29.6
Thhalv10005441m.g Eutrema salsugineum HOM05D003839 ORTHO05D003352 5.6e-12 75.5 205 25.9
Thhalv10002164m.g Eutrema salsugineum HOM05D003839 ORTHO05D003352 7.4e-12 75.1 201 25.4
A06p31440 Brassica napus HOM05D008292 ORTHO05D003352 9.6e-12 74.7 211 25.6
Thhalv10002269m.g Eutrema salsugineum HOM05D003839 ORTHO05D003352 1.3e-11 74.3 144 30.6
BolC2t12326H Brassica oleracea HOM05D008292 ORTHO05D003352 2.1e-11 73.6 152 28.9
Thhalv10002917m.g Eutrema salsugineum HOM05D003839 ORTHO05D003352 3.6e-11 72.8 143 33.6
BcaC03g17703 Brassica carinata HOM05D008292 ORTHO05D003352 4.8e-11 72.4 152 28.3
BolC2t11778H Brassica oleracea HOM05D008292 ORTHO05D003352 4.8e-11 72.4 152 28.3
BcaC01g02162 Brassica carinata HOM05D003839 ORTHO05D003352 6.2e-11 72.0 163 23.9
Atru.chr1.711 Acer truncatum HOM05D002915 ORTHO05D003004 8.1e-11 71.6 164 32.9
AL8G28420 Arabidopsis lyrata HOM05D003839 ORTHO05D003352 8.1e-11 71.6 203 24.6
A09p40840 Brassica napus HOM05D008292 ORTHO05D003352 8.1e-11 71.6 204 25.5
C03p32250 Brassica napus HOM05D008292 ORTHO05D003352 1.1e-10 71.2 192 25.5
CiPaw.05G115300 Carya illinoinensis HOM05D002915 ORTHO05D003004 1.1e-10 71.2 222 25.2
CiPaw.05G115400 Carya illinoinensis HOM05D002915 ORTHO05D003004 1.1e-10 71.2 222 25.2
C07p08430 Brassica napus HOM05D008292 ORTHO05D003352 1.4e-10 70.9 192 25.5
AT2G35280 Arabidopsis thaliana HOM05D008292 ORTHO05D003352 1.8e-10 70.5 139 31.7
BcaNung06308 Brassica carinata HOM05D008292 ORTHO05D003352 2.4e-10 70.1 188 25.5
BcaC04g22280 Brassica carinata HOM05D003839 ORTHO05D003352 3.1e-10 69.7 211 24.6
C06p50270 Brassica napus HOM05D003839 ORTHO05D003352 3.1e-10 69.7 204 23.0
CARHR101890 Cardamine hirsuta HOM05D008292 ORTHO05D003352 3.1e-10 69.7 139 31.7
Atru.chr1.712 Acer truncatum HOM05D002915 ORTHO05D003004 4.0e-10 69.3 164 32.3
Atru.chr11.2244 Acer truncatum HOM05D002915 ORTHO05D003004 4.0e-10 69.3 166 32.5
Atru.chr11.2259 Acer truncatum HOM05D002915 ORTHO05D003004 4.0e-10 69.3 166 32.5
BcaB01g00999 Brassica carinata HOM05D008292 ORTHO05D003352 4.0e-10 69.3 176 27.3
C04p33340 Brassica napus HOM05D003839 ORTHO05D003352 4.0e-10 69.3 204 23.0
BraA09t40513Z Brassica rapa HOM05D003839 ORTHO05D003352 5.3e-10 68.9 157 24.2
CiPaw.05G115500 Carya illinoinensis HOM05D002915 ORTHO05D003004 5.3e-10 68.9 164 26.8
Manes.12G023850 Manihot esculenta HOM05D002915 ORTHO05D003004 5.3e-10 68.9 163 28.8
TAR629G0865 Trochodendron aralioides HOM05D002915 ORTHO05D003004 5.3e-10 68.9 172 26.2
BcaB08g35221 Brassica carinata HOM05D003839 ORTHO05D003352 1.2e-09 67.8 210 20.0
Manes.12G014800 Manihot esculenta HOM05D002915 ORTHO05D003004 1.2e-09 67.8 163 28.8
A09p19700 Brassica napus HOM05D003839 ORTHO05D003352 2.0e-09 67.0 179 24.6
Prupe.1G137300 Prunus persica HOM05D002915 ORTHO05D003004 2.0e-09 67.0 208 26.9
BcaC06g36055 Brassica carinata HOM05D008292 ORTHO05D003352 2.6e-09 66.6 188 25.5
BcaC03g15389 Brassica carinata HOM05D003839 ORTHO05D003352 3.4e-09 66.2 148 25.0
Manes.13G015600 Manihot esculenta HOM05D002915 ORTHO05D003004 3.4e-09 66.2 163 29.4
C04p41030 Brassica napus HOM05D003839 ORTHO05D003352 4.5e-09 65.9 173 25.4
BolC4t25686H Brassica oleracea HOM05D003839 ORTHO05D003352 4.5e-09 65.9 173 25.4
Medtr4g119850 Medicago truncatula HOM05D002915 ORTHO05D003004 4.5e-09 65.9 127 34.6
BcaB08g35818 Brassica carinata HOM05D003839 ORTHO05D003352 7.6e-09 65.1 159 23.9
BcaC03g16634 Brassica carinata HOM05D003839 ORTHO05D003352 7.6e-09 65.1 148 25.0
Hma1.2p1_0167F.1_g073810 Hydrangea macrophylla HOM05D002915 ORTHO05D003004 7.6e-09 65.1 172 27.3
BolC7t43565H Brassica oleracea HOM05D003839 ORTHO05D003352 9.9e-09 64.7 148 25.0
Dinv14798 Davidia involucrata HOM05D002915 ORTHO05D003004 9.9e-09 64.7 140 29.3
Psat4g025920 Pisum sativum HOM05D002915 ORTHO05D003004 9.9e-09 64.7 177 28.8
A03p67960 Brassica napus HOM05D003839 ORTHO05D003352 1.3e-08 64.3 206 23.3
BraA01t02749Z Brassica rapa HOM05D003839 ORTHO05D003352 1.3e-08 64.3 160 24.4
Lsat_1_v5_gn_8_150181 Lactuca sativa HOM05D000825 ORTHO05D003684 1.3e-08 64.3 148 29.1
TPR.G23884 Trifolium pratense HOM05D002915 ORTHO05D003004 1.3e-08 64.3 232 27.2
BraA02t07279Z Brassica rapa HOM05D003839 ORTHO05D003352 1.7e-08 63.9 135 25.9
TAR629G0058 Trochodendron aralioides HOM05D002915 ORTHO05D003004 1.7e-08 63.9 215 23.7
BcaB05g23505 Brassica carinata HOM05D003839 ORTHO05D003352 2.2e-08 63.5 159 24.5
Manes.11G084185 Manihot esculenta HOM05D002915 ORTHO05D003004 2.2e-08 63.5 162 25.9
TPR.G3196 Trifolium pratense HOM05D002915 ORTHO05D003004 2.9e-08 63.2 220 26.8
THA.LOC104810144 Tarenaya hassleriana HOM05D002915 ORTHO05D003004 3.8e-08 62.8 145 31.0
BcaC03g15793 Brassica carinata HOM05D008292 ORTHO05D003352 4.9e-08 62.4 145 26.2
Haze_24934 Corylus avellana HOM05D002915 ORTHO05D003004 6.4e-08 62.0 126 31.0
Psat0s1573g0120 Pisum sativum HOM05D002915 ORTHO05D003004 6.4e-08 62.0 179 29.1
AT5G17167 Arabidopsis thaliana HOM05D003839 ORTHO05D003352 8.4e-08 61.6 159 25.2
BcaB07g32710 Brassica carinata HOM05D003839 ORTHO05D003352 8.4e-08 61.6 159 24.5
Potri.013G008800 Populus trichocarpa HOM05D002915 ORTHO05D003004 8.4e-08 61.6 154 26.6
QL03p054762 Quercus lobata HOM05D002915 ORTHO05D003004 8.4e-08 61.6 163 30.1
Sabra13G0007400 Salix brachista HOM05D002915 ORTHO05D003004 8.4e-08 61.6 134 29.9
A05p32880 Brassica napus HOM05D008292 ORTHO05D003352 1.1e-07 61.2 149 26.2
BolC6t38134H Brassica oleracea HOM05D003839 ORTHO05D003352 1.1e-07 61.2 161 24.8
BraA05t22695Z Brassica rapa HOM05D008292 ORTHO05D003352 1.1e-07 61.2 149 26.2
A01p36380 Brassica napus HOM05D003839 ORTHO05D003352 1.4e-07 60.8 212 22.2
BolC9t55033H Brassica oleracea HOM05D003839 ORTHO05D003352 1.4e-07 60.8 151 28.5
BcaB07g31374 Brassica carinata HOM05D003839 ORTHO05D003352 1.9e-07 60.5 173 22.5
Potri.001G321400 Populus trichocarpa HOM05D002915 ORTHO05D003004 3.2e-07 59.7 165 26.7
BolC3t15567H Brassica oleracea HOM05D008292 ORTHO05D003352 4.2e-07 59.3 143 25.9
Lj4g0001673 Lotus japonicus HOM05D002915 ORTHO05D003004 4.2e-07 59.3 135 32.6
BolC9t55562H Brassica oleracea HOM05D009411 ORTHO05D014997 5.5e-07 58.9 131 27.5
Cfa002665 Carpinus fangiana HOM05D002915 ORTHO05D003004 5.5e-07 58.9 161 29.2
TAR629G2135 Trochodendron aralioides HOM05D002915 ORTHO05D003004 5.5e-07 58.9 148 27.7
C07p34600 Brassica napus HOM05D009411 ORTHO05D014997 7.1e-07 58.5 130 27.7
C09p26700 Brassica napus HOM05D009411 ORTHO05D014997 7.1e-07 58.5 130 27.7
BolC4t27064H Brassica oleracea HOM05D008292 ORTHO05D003352 7.1e-07 58.5 149 26.2
BolC7t43992H Brassica oleracea HOM05D009411 ORTHO05D014997 7.1e-07 58.5 130 27.7
Thhalv10003388m.g Eutrema salsugineum HOM05D003839 ORTHO05D003352 7.1e-07 58.5 89 32.6
Lj4g0008862 Lotus japonicus HOM05D002915 ORTHO05D003004 7.1e-07 58.5 119 33.6
C06p24070 Brassica napus HOM05D018430 ORTHO05D020143 9.3e-07 58.2 106 28.3
C08p54110 Brassica napus HOM05D008883 ORTHO05D011075 9.3e-07 58.2 101 35.6
ClCG11G013100 Citrullus lanatus HOM05D002915 ORTHO05D003004 9.3e-07 58.2 163 25.8
BcaB02g06630 Brassica carinata HOM05D003839 ORTHO05D003352 1.2e-06 57.8 213 23.9
BcaC03g15888 Brassica carinata HOM05D008292 ORTHO05D003352 1.2e-06 57.8 128 28.9
BcaC04g21847 Brassica carinata HOM05D009411 ORTHO05D014997 1.2e-06 57.8 130 27.7
BcaC07g37399 Brassica carinata HOM05D008292 ORTHO05D003352 1.2e-06 57.8 135 27.4
BcaC09g47930 Brassica carinata HOM05D008292 ORTHO05D003352 1.2e-06 57.8 176 26.7
BcaB01g02875 Brassica carinata HOM05D003839 ORTHO05D003352 1.6e-06 57.4 158 24.7
C03p19740 Brassica napus HOM05D008292 ORTHO05D003352 1.6e-06 57.4 147 26.5
C05p17950 Brassica napus HOM05D003839 ORTHO05D003352 1.6e-06 57.4 153 27.5
Lj4g0002182 Lotus japonicus HOM05D002915 ORTHO05D003004 1.6e-06 57.4 147 32.0
Actinidia25760 Actinidia chinensis HOM05D002915 ORTHO05D003004 2.1e-06 57.0 168 28.0
BcaB04g18348 Brassica carinata HOM05D003839 ORTHO05D003352 2.1e-06 57.0 160 21.2
ECA233G1149 Erigeron canadensis HOM05D000825 ORTHO05D003004 2.7e-06 56.6 156 27.6
Thhalv10027513m.g Eutrema salsugineum HOM05D003839 ORTHO05D003352 2.7e-06 56.6 126 30.2
Atru.chr11.2288 Acer truncatum HOM05D002915 ORTHO05D003004 4.6e-06 55.8 164 29.3
BcaB05g24307 Brassica carinata HOM05D003839 ORTHO05D003352 6.0e-06 55.5 206 25.2


User provided reference genes

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