Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g29639 Brassica carinata HOM05D005866 ORTHO05D007078 2.0e-112 409.5 260 100.0
C05p58830 Brassica napus HOM05D005866 ORTHO05D007078 3.6e-106 388.7 260 93.8
BolC5t34535H Brassica oleracea HOM05D005866 ORTHO05D007078 3.1e-105 385.6 260 93.5
A05p39790 Brassica napus HOM05D005866 ORTHO05D007078 5.2e-105 384.8 260 93.8
BraA05t22763Z Brassica rapa HOM05D005866 ORTHO05D007078 5.2e-105 384.8 260 93.8
Sp3g07500 Schrenkiella parvula HOM05D005866 ORTHO05D007078 8.7e-100 367.5 260 90.4
Thhalv10021354m.g Eutrema salsugineum HOM05D005866 ORTHO05D007078 8.1e-98 360.9 260 88.1
Carub.0003s0821 Capsella rubella HOM05D005866 ORTHO05D007078 2.6e-96 355.9 260 83.8
AT3G09050 Arabidopsis thaliana HOM05D005866 ORTHO05D007078 9.9e-96 354.0 260 89.2
CARHR083410 Cardamine hirsuta HOM05D005866 ORTHO05D007078 3.2e-94 349.0 260 87.7
AL3G20110 Arabidopsis lyrata HOM05D005866 ORTHO05D007078 3.5e-93 345.5 254 86.6
BraA01t04319Z Brassica rapa HOM05D005866 ORTHO05D007078 7.9e-93 344.4 260 76.9
BcaC09g48050 Brassica carinata HOM05D005866 ORTHO05D007078 1.0e-92 344.0 260 83.8
BolC1t05477H Brassica oleracea HOM05D005866 ORTHO05D007078 2.1e-90 336.3 260 82.7
Aa31LG3G1580 Aethionema arabicum HOM05D005866 ORTHO05D007078 2.0e-88 329.7 259 70.7
BcaC09g48005 Brassica carinata HOM05D005866 ORTHO05D007078 2.2e-87 326.2 277 77.6
BcaC09g48006 Brassica carinata HOM05D005866 ORTHO05D007078 1.0e-71 274.2 277 60.6
THA.LOC104816219 Tarenaya hassleriana HOM05D005866 ORTHO05D007078 1.4e-65 253.8 257 67.3
CiPaw.09G206400 Carya illinoinensis HOM05D005866 ORTHO05D007078 2.3e-60 236.5 252 58.7
Potri.006G096700 Populus trichocarpa HOM05D005866 ORTHO05D007078 1.1e-59 234.2 262 52.3
TWI74G1551 Tripterygium wilfordii HOM05D005866 ORTHO05D007078 1.3e-58 230.7 251 64.9
Sabra06G0074300 Salix brachista HOM05D005866 ORTHO05D007078 3.7e-58 229.2 257 59.9
Cpa.g.sc56.117 Carica papaya HOM05D005866 ORTHO05D007078 4.8e-58 228.8 251 64.5
Thecc.05G021700 Theobroma cacao HOM05D005866 ORTHO05D007078 9.1e-57 224.6 260 59.2
Duzib128G1899 Durio zibethinus HOM05D005866 ORTHO05D007078 5.9e-56 221.9 259 59.8
Gohir.D01G215200 Gossypium hirsutum HOM05D005866 ORTHO05D007078 3.8e-55 219.2 262 52.3
Dinv35509 Davidia involucrata HOM05D005866 ORTHO05D007078 4.2e-54 215.7 257 59.1
Dinv14530 Davidia involucrata HOM05D005866 ORTHO05D007078 9.4e-54 214.5 257 58.8
CSS0007949 Camellia sinensis var. sinensis HOM05D005866 ORTHO05D007078 2.1e-53 213.4 258 63.2
CSS0025068 Camellia sinensis var. sinensis HOM05D005866 ORTHO05D007078 2.1e-53 213.4 258 63.2
FAN09G2814 Fragaria x ananassa HOM05D000012 ORTHO05D007078 2.7e-53 213.0 249 52.6
MD04G1147400 Malus domestica HOM05D005866 ORTHO05D007078 1.4e-52 210.7 256 48.8
Ciclev10012537m.g Citrus clementina HOM05D005866 ORTHO05D007078 1.8e-52 210.3 252 59.1
FAN14G3518 Fragaria x ananassa HOM05D005866 ORTHO05D007078 3.9e-52 209.1 250 48.4
ClCG04G007220 Citrullus lanatus HOM05D005866 ORTHO05D007078 1.5e-51 207.2 194 68.6
Manes.09G102400 Manihot esculenta HOM05D005866 ORTHO05D007078 1.5e-51 207.2 248 59.7
Sed0005881 Sechium edule HOM05D005866 ORTHO05D007078 1.5e-51 207.2 247 57.5
MELO3C003227.2 Cucumis melo HOM05D005866 ORTHO05D007078 4.4e-51 205.7 240 57.9
CsaV3_4G026010 Cucumis sativus L. HOM05D005866 ORTHO05D007078 4.4e-51 205.7 247 51.0
FAN14G3397 Fragaria x ananassa HOM05D000012 ORTHO05D000567 5.7e-51 205.3 249 52.2
FvH4_6g11980 Fragaria vesca HOM05D005866 ORTHO05D007078 9.7e-51 204.5 249 52.2
PGR031G2542 Punica granatum HOM05D005866 ORTHO05D007078 9.7e-51 204.5 246 63.4
Gohir.A01G225500 Gossypium hirsutum HOM05D005866 ORTHO05D007078 1.7e-50 203.8 262 58.8
Lsat_1_v5_gn_9_36061 Lactuca sativa HOM05D005866 ORTHO05D007078 3.7e-50 202.6 259 59.1
AUR62042946 Chenopodium quinoa HOM05D005866 ORTHO05D007078 4.8e-50 202.2 217 52.5
FAN05G0379 Fragaria x ananassa HOM05D000012 ORTHO05D000567 6.3e-50 201.8 249 56.2
Sc01g0006840 Simmondsia chinensis HOM05D005866 ORTHO05D007078 6.3e-50 201.8 253 60.5
FAN02G1355 Fragaria x ananassa HOM05D005866 ORTHO05D007078 1.8e-49 200.3 249 51.4
Prupe.6G271100 Prunus persica HOM05D000012 ORTHO05D000567 3.1e-49 199.5 256 52.7
ECA247G0127 Erigeron canadensis HOM05D005866 ORTHO05D007078 4.1e-49 199.1 252 51.6
Haze_20956 Corylus avellana HOM05D005866 ORTHO05D007078 5.3e-49 198.7 254 56.7
Peaxi162Scf00141g00718 Petunia axillaris HOM05D005866 ORTHO05D007078 5.3e-49 198.7 256 61.3
COL.COLO4_14593 Corchorus olitorius HOM05D005866 ORTHO05D007078 9.1e-49 198.0 256 60.9
AUR62025814 Chenopodium quinoa HOM05D005866 ORTHO05D007078 1.2e-48 197.6 194 54.1
Nitab4.5_0004912g0060 Nicotiana tabacum HOM05D005866 ORTHO05D007078 2.0e-48 196.8 206 65.0
Atru.chr8.2203 Acer truncatum HOM05D005866 ORTHO05D007078 1.0e-47 194.5 265 49.1
Aqoxy1G00701 Aquilegia oxysepala HOM05D005866 ORTHO05D007078 2.2e-47 193.4 242 46.3
PGSC0003DMG400011090 Solanum tuberosum HOM05D005866 ORTHO05D007078 5.0e-47 192.2 259 55.6
vmacro08602 Vaccinium macrocarpon HOM05D005866 ORTHO05D007078 1.5e-46 190.7 251 56.2
unitig_578.g15896 Utricularia gibba HOM05D005866 ORTHO05D007078 9.4e-46 188.0 235 58.3
VMungo1383G0141 Vigna mungo HOM05D005866 ORTHO05D007078 1.2e-45 187.6 228 50.4
GSVIVG01034004001 Vitis vinifera HOM05D000012 ORTHO05D000567 1.2e-45 187.6 248 56.5
Glyma.07G145800 Glycine max HOM05D005866 ORTHO05D007078 1.6e-45 187.2 250 46.8
Sopen10g034540 Solanum pennellii HOM05D005866 ORTHO05D007078 4.7e-45 185.7 259 54.1
DCAR_015452 Daucus carota HOM05D005866 ORTHO05D007078 8.0e-45 184.9 254 53.9
Nn2g11373 Nelumbo nucifera HOM05D005866 ORTHO05D007078 8.0e-45 184.9 233 58.8
Gorai.002G261300 Gossypium raimondii HOM05D005866 ORTHO05D007078 2.3e-44 183.3 262 56.1
Glyma.18G197300 Glycine max HOM05D005866 ORTHO05D007078 3.0e-44 183.0 247 45.3
TAR623G0986 Trochodendron aralioides HOM05D005866 ORTHO05D007078 3.0e-44 183.0 254 51.6
CAN.G1297.4 Capsicum annuum HOM05D005866 ORTHO05D007078 8.8e-44 181.4 211 62.6
Sopen09g007090 Solanum pennellii HOM05D005866 ORTHO05D007078 8.8e-44 181.4 251 57.0
Phvul.008G107300 Phaseolus vulgaris HOM05D005866 ORTHO05D007078 1.5e-43 180.6 246 49.2
TPR.G1580 Trifolium pratense HOM05D005866 ORTHO05D007078 1.5e-43 180.6 234 47.0
Lalb_Chr07g0193301 Lupinus albus HOM05D005866 ORTHO05D007078 2.0e-43 180.3 207 50.7
Lj3g0009346 Lotus japonicus HOM05D005866 ORTHO05D007078 2.6e-43 179.9 243 44.4
Ah.12g060060 Amaranthus hybridus HOM05D005866 ORTHO05D007078 9.7e-43 177.9 221 57.5
Medtr7g067000 Medicago truncatula HOM05D005866 ORTHO05D007078 9.7e-43 177.9 234 47.4
Lj2C80T14 Lonicera japonica HOM05D005866 ORTHO05D007078 1.7e-42 177.2 251 45.8
arahy.Tifrunner.gnm1.ann1.Q1H550 Arachis hypogaea HOM05D005866 ORTHO05D007078 2.2e-42 176.8 206 48.1
Eucgr.B02792 Eucalyptus grandis HOM05D005866 ORTHO05D007078 2.2e-42 176.8 252 55.6
Ca_07614_v3 Cicer arietinum L. HOM05D005866 ORTHO05D007078 4.8e-42 175.6 234 46.2
Lj1g0011685 Lotus japonicus HOM05D005866 ORTHO05D007078 4.1e-41 172.6 233 43.3
Psat3g131120 Pisum sativum HOM05D005866 ORTHO05D007078 4.1e-41 172.6 253 44.3
VMungo0331G1214 Vigna mungo HOM05D005866 ORTHO05D007078 4.1e-41 172.6 256 52.3
Hund02698 Selenicereus undatus HOM05D005866 ORTHO05D007078 7.0e-41 171.8 273 39.9
Solyc10g085080.3 Solanum lycopersicum HOM05D005866 ORTHO05D007078 1.2e-40 171.0 275 50.5
SGA_v2.0_scaffold85G26760 Striga asiatica HOM05D005866 ORTHO05D007078 1.2e-40 171.0 140 63.6
Cc06_g01630 Coffea canephora HOM05D005866 ORTHO05D007078 2.0e-40 170.2 259 52.5
Nitab4.5_0001837g0050 Nicotiana tabacum HOM05D005866 ORTHO05D007078 2.0e-40 170.2 257 56.8
Phvul.010G008600 Phaseolus vulgaris HOM05D005866 ORTHO05D007078 2.7e-40 169.9 241 54.4
Nitab4.5_0000652g0170 Nicotiana tabacum HOM05D005866 ORTHO05D007078 4.5e-40 169.1 229 55.9
CDE03G0505 Ceratophyllum demersum HOM05D005866 ORTHO05D007078 7.7e-40 168.3 257 50.6
Nitab4.5_0000008g0810 Nicotiana tabacum HOM05D005866 ORTHO05D007078 7.7e-40 168.3 257 55.6
Psat7g247600 Pisum sativum HOM05D005866 ORTHO05D007078 7.7e-40 168.3 249 41.8
CAN.G338.58 Capsicum annuum HOM05D005866 ORTHO05D007078 1.3e-39 167.5 256 55.1
CANSAT35G0638 Cannabis sativa HOM05D005866 ORTHO05D007078 6.5e-39 165.2 260 51.9
MSTRG.5595 Avicennia marina HOM05D005866 ORTHO05D007078 1.9e-38 163.7 260 51.2
Zm00001eb367320 Zea mays HOM05D005866 ORTHO05D007078 2.5e-38 163.3 204 52.9
arahy.Tifrunner.gnm1.ann1.LP8IIZ Arachis hypogaea HOM05D005866 ORTHO05D007078 9.4e-38 161.4 206 44.7
ECA247G1841 Erigeron canadensis HOM05D005866 ORTHO05D007078 1.6e-37 160.6 214 50.9
Medtr4g015010 Medicago truncatula HOM05D005866 ORTHO05D007078 1.6e-37 160.6 238 52.1
TPR.G5230 Trifolium pratense HOM05D005866 ORTHO05D007078 2.7e-37 159.8 248 53.2
RcHm_v2.0_Chr3g0463811 Rosa chinensis HOM05D005866 ORTHO05D007078 6.1e-37 158.7 133 62.4
PGSC0003DMG400020319 Solanum tuberosum HOM05D005866 ORTHO05D007078 6.1e-37 158.7 256 48.8
PSO384G0902 Papaver somniferum HOM05D005866 ORTHO05D007078 8.0e-37 158.3 248 49.2
Os01g0853000 Oryza sativa ssp. japonica HOM05D005866 ORTHO05D007078 3.0e-36 156.4 213 51.2
Solyc09g014215.2 Solanum lycopersicum HOM05D005866 ORTHO05D007078 4.0e-36 156.0 258 51.6
arahy.Tifrunner.gnm1.ann1.QNAF0W Arachis hypogaea HOM05D005866 ORTHO05D007078 1.2e-35 154.5 206 44.2
arahy.Tifrunner.gnm1.ann1.T33YJ3 Arachis hypogaea HOM05D005866 ORTHO05D007078 1.4e-33 147.5 251 39.0
arahy.Tifrunner.gnm1.ann1.F83RTD Arachis hypogaea HOM05D005866 ORTHO05D007078 1.8e-33 147.1 251 39.0
EL10Ac6g13875 Beta vulgaris HOM05D005866 ORTHO05D007078 4.1e-33 146.0 126 57.1
Migut.J00221 Erythranthe guttata HOM05D005866 ORTHO05D007078 2.0e-32 143.7 259 52.5
TAR633G2503 Trochodendron aralioides HOM05D005866 ORTHO05D007078 4.5e-32 142.5 129 57.4
arahy.Tifrunner.gnm1.ann1.6JA19R Arachis hypogaea HOM05D005866 ORTHO05D007078 9.5e-30 134.8 166 46.4
Glyma.03G077300 Glycine max HOM05D005866 ORTHO05D007078 4.7e-29 132.5 210 54.3
Peaxi162Scf00009g01923 Petunia axillaris HOM05D005866 ORTHO05D007078 1.4e-28 131.0 245 46.9
Lj2P1203T18 Lonicera japonica HOM05D005866 ORTHO05D007078 6.8e-28 128.6 135 52.6
PSO339G5866 Papaver somniferum HOM05D005866 ORTHO05D007078 6.8e-28 128.6 181 54.7
Actinidia05342 Actinidia chinensis HOM05D005866 ORTHO05D007078 1.8e-25 120.6 181 49.7
ATR0618G104 Amborella trichopoda HOM05D005866 ORTHO05D007078 1.2e-24 117.9 130 50.0
AagrBONN_evm.TU.Sc2ySwM_117.2545 Anthoceros agrestis HOM05D005866 ORTHO05D007078 4.0e-20 102.8 205 31.7
SEGI_33363 Sequoiadendron giganteum HOM05D005866 ORTHO05D007078 3.4e-19 99.8 203 30.0
SMO143G0029 Selaginella moellendorffii HOM05D001879 ORTHO05D007648 5.8e-19 99.0 207 30.0
Mapoly0004s0086 Marchantia polymorpha HOM05D005866 ORTHO05D007078 4.9e-18 95.9 250 29.2
Pp3c5_19930 Physcomitrium patens HOM05D005866 ORTHO05D007078 6.4e-18 95.5 209 30.1
Dinv37082 Davidia involucrata HOM05D005866 ORTHO05D007078 5.0e-15 85.9 97 48.5
Actinidia01118 Actinidia chinensis HOM05D005866 ORTHO05D007078 8.6e-15 85.1 83 54.2
SEGI_17473 Sequoiadendron giganteum HOM05D005866 ORTHO05D007078 1.1e-14 84.7 181 29.8
Ah.07g199780 Amaranthus hybridus HOM05D005866 ORTHO05D007078 1.8e-12 77.4 79 46.8
Pp3c20_9600 Physcomitrium patens HOM05D005866 ORTHO05D007078 4.9e-10 69.3 211 27.0
HanXRQChr10g0287001 Helianthus annuus HOM05D005866 ORTHO05D007078 2.4e-09 67.0 91 44.0
Mapoly0010s0127 Marchantia polymorpha HOM05D005866 ORTHO05D007078 1.6e-08 64.3 203 26.6
Actinidia01119 Actinidia chinensis HOM05D005866 ORTHO05D007078 4.6e-08 62.8 90 44.4
Pp3c23_6870 Physcomitrium patens HOM05D005866 ORTHO05D007078 3.0e-07 60.1 205 25.4


User provided reference genes

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