Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g29600 Brassica carinata HOM05D004172 ORTHO05D006010 0.0e+00 1110.9 587 100.0
C05p59200 Brassica napus HOM05D004172 ORTHO05D006010 0.0e+00 1100.5 598 97.3
BolC5t34577H Brassica oleracea HOM05D004172 ORTHO05D006010 0.0e+00 1093.2 598 95.8
A05p40120 Brassica napus HOM05D004172 ORTHO05D006010 0.0e+00 1092.0 597 97.0
BraA03t12811Z Brassica rapa HOM05D004172 ORTHO05D006010 5.2e-302 1040.4 597 92.1
BolC3t16675H Brassica oleracea HOM05D004172 ORTHO05D006010 2.6e-301 1038.1 596 92.1
Sp3g07090 Schrenkiella parvula HOM05D004172 ORTHO05D006010 7.5e-301 1036.6 597 91.8
Thhalv10020349m.g Eutrema salsugineum HOM05D004172 ORTHO05D006010 6.3e-300 1033.5 597 91.5
A03p36430 Brassica napus HOM05D004172 ORTHO05D006010 2.7e-298 1028.1 597 91.5
Carub.0003s0778 Capsella rubella HOM05D004172 ORTHO05D006010 1.0e-297 1026.2 597 90.5
CARHR082950 Cardamine hirsuta HOM05D004172 ORTHO05D006010 1.3e-297 1025.8 597 90.6
AL3G19650 Arabidopsis lyrata HOM05D004172 ORTHO05D006010 2.3e-297 1025.0 597 90.3
BcaC09g47981 Brassica carinata HOM05D004172 ORTHO05D006010 1.9e-296 1021.9 598 90.6
AT3G08650 Arabidopsis thaliana HOM05D004172 ORTHO05D006010 9.5e-296 1019.6 597 89.9
BcaB04g21247 Brassica carinata HOM05D004172 ORTHO05D006010 4.7e-295 1017.3 599 90.3
BolC1t05497H Brassica oleracea HOM05D004172 ORTHO05D006010 4.7e-295 1017.3 599 90.5
BNapus_Darmor_BZH_scaffold_167p00070 Brassica napus HOM05D004172 ORTHO05D006010 4.9e-292 1007.3 596 89.8
BcaC01g04188 Brassica carinata HOM05D004172 ORTHO05D006010 9.2e-291 1003.0 596 90.1
Aa31LG5G18700 Aethionema arabicum HOM05D004172 ORTHO05D006010 9.5e-280 966.5 591 86.6
THA.LOC104823330 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 1.1e-262 909.8 593 80.8
Manes.09G122000 Manihot esculenta HOM05D004172 ORTHO05D006010 1.5e-245 852.8 586 76.6
Eucgr.K01297 Eucalyptus grandis HOM05D004172 ORTHO05D006010 2.0e-245 852.4 576 78.0
Medtr7g074060 Medicago truncatula HOM05D004172 ORTHO05D006010 2.6e-245 852.0 578 76.1
Prupe.6G297500 Prunus persica HOM05D004172 ORTHO05D006010 3.4e-245 851.7 580 77.9
TWI53G0780 Tripterygium wilfordii HOM05D004172 ORTHO05D006010 5.8e-245 850.9 596 76.0
Thecc.04G148100 Theobroma cacao HOM05D004172 ORTHO05D006010 7.6e-245 850.5 576 77.8
CANSAT55G0003 Cannabis sativa HOM05D004172 ORTHO05D006010 1.3e-244 849.7 582 76.6
Phvul.008G079500 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 3.8e-244 848.2 579 75.5
MD12G1192900 Malus domestica HOM05D004172 ORTHO05D006010 4.9e-244 847.8 580 76.9
Psat3g117200 Pisum sativum HOM05D004172 ORTHO05D006010 1.4e-243 846.3 582 75.6
FAN09G2297 Fragaria x ananassa HOM05D004172 ORTHO05D006010 1.9e-243 845.9 580 77.8
VMungo1383G2431 Vigna mungo HOM05D004172 ORTHO05D006010 3.2e-243 845.1 579 75.0
MD04G1177600 Malus domestica HOM05D004172 ORTHO05D006010 4.2e-243 844.7 581 76.9
RcHm_v2.0_Chr3g0459921 Rosa chinensis HOM05D004172 ORTHO05D006010 5.5e-243 844.3 580 77.2
Ca_07790_v3 Cicer arietinum L. HOM05D004172 ORTHO05D006010 7.1e-243 844.0 584 74.1
Glyma.18G217100 Glycine max HOM05D004172 ORTHO05D006010 1.2e-242 843.2 579 75.3
FAN14G3054 Fragaria x ananassa HOM05D004172 ORTHO05D006010 1.6e-242 842.8 580 77.4
Duzib151G0210 Durio zibethinus HOM05D004172 ORTHO05D006010 3.5e-242 841.6 576 76.4
PGR004G2490 Punica granatum HOM05D004172 ORTHO05D006010 4.6e-242 841.3 563 78.7
Manes.08G168300 Manihot esculenta HOM05D004172 ORTHO05D006010 6.0e-242 840.9 576 75.9
FvH4_6g09450 Fragaria vesca HOM05D004172 ORTHO05D006010 7.9e-242 840.5 580 77.2
FAN02G3863 Fragaria x ananassa HOM05D004172 ORTHO05D006010 1.3e-241 839.7 580 76.9
Glyma.09G271900 Glycine max HOM05D004172 ORTHO05D006010 3.0e-241 838.6 579 75.1
Lj1g0013582 Lotus japonicus HOM05D004172 ORTHO05D006010 3.9e-241 838.2 576 75.3
THA.LOC104806653 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 3.9e-241 838.2 577 75.7
Gohir.A02G001800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 6.7e-241 837.4 576 76.9
Ciclev10011331m.g Citrus clementina HOM05D004172 ORTHO05D006010 3.3e-240 835.1 578 76.6
Gorai.011G125600 Gossypium raimondii HOM05D004172 ORTHO05D006010 4.3e-240 834.7 576 75.9
Lalb_Chr07g0195761 Lupinus albus HOM05D004172 ORTHO05D006010 4.3e-240 834.7 571 76.0
arahy.Tifrunner.gnm1.ann1.VH0VRX Arachis hypogaea HOM05D004172 ORTHO05D006010 9.6e-240 833.6 578 74.4
Gohir.D10G113800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 1.3e-239 833.2 576 75.3
Gohir.A10G152400 Gossypium hirsutum HOM05D004172 ORTHO05D006010 3.7e-239 831.6 576 75.2
Cfa017003 Carpinus fangiana HOM05D004172 ORTHO05D006010 6.2e-239 830.9 597 73.7
TPR.G24292 Trifolium pratense HOM05D004172 ORTHO05D006010 8.2e-239 830.5 582 74.4
arahy.Tifrunner.gnm1.ann1.3N9KBA Arachis hypogaea HOM05D004172 ORTHO05D006010 1.4e-238 829.7 578 74.6
Dinv16944 Davidia involucrata HOM05D004172 ORTHO05D006010 5.3e-238 827.8 582 75.1
arahy.Tifrunner.gnm1.ann1.5JF3JJ Arachis hypogaea HOM05D004172 ORTHO05D006010 1.5e-237 826.2 578 74.6
arahy.Tifrunner.gnm1.ann1.SQ7DBT Arachis hypogaea HOM05D004172 ORTHO05D006010 2.0e-237 825.9 577 74.7
Potri.006G111200 Populus trichocarpa HOM05D004172 ORTHO05D006010 2.0e-237 825.9 576 75.7
Atru.chr8.66 Acer truncatum HOM05D004172 ORTHO05D006010 7.6e-237 823.9 597 73.9
QL07p031284 Quercus lobata HOM05D004172 ORTHO05D006010 1.0e-236 823.5 575 76.2
QL07p031617 Quercus lobata HOM05D004172 ORTHO05D006010 1.0e-236 823.5 576 75.9
Gohir.D02G002100 Gossypium hirsutum HOM05D004172 ORTHO05D006010 2.9e-236 822.0 576 75.7
Gorai.005G002600 Gossypium raimondii HOM05D004172 ORTHO05D006010 5.0e-236 821.2 576 75.7
Hma1.2p1_0106F.1_g051180 Hydrangea macrophylla HOM05D004172 ORTHO05D006010 8.4e-236 820.5 579 73.6
CsaV3_4G027360 Cucumis sativus L. HOM05D004172 ORTHO05D006010 1.1e-235 820.1 582 74.4
Sed0001307 Sechium edule HOM05D004172 ORTHO05D006010 5.5e-235 817.8 578 74.7
Cpa.g.sc0.76 Carica papaya HOM05D004172 ORTHO05D006010 1.2e-234 816.6 576 73.6
Phvul.010G059200 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 4.6e-234 814.7 572 74.5
Lalb_Chr01g0023931 Lupinus albus HOM05D004172 ORTHO05D006010 7.9e-234 813.9 580 73.3
ClCG04G006210 Citrullus lanatus HOM05D004172 ORTHO05D006010 1.0e-233 813.5 598 72.2
Dinv21399 Davidia involucrata HOM05D004172 ORTHO05D006010 1.3e-233 813.1 579 73.9
CSS0013897 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 6.7e-233 810.8 580 74.5
Rhsim04G0120600 Rhododendron simsii HOM05D004172 ORTHO05D006010 8.7e-233 810.4 580 74.1
MELO3C025255.2 Cucumis melo HOM05D004172 ORTHO05D006010 1.1e-232 810.1 582 73.5
Nitab4.5_0000707g0290 Nicotiana tabacum HOM05D004172 ORTHO05D006010 4.3e-232 808.1 577 74.2
Nitab4.5_0006228g0020 Nicotiana tabacum HOM05D004172 ORTHO05D006010 6.3e-231 804.3 563 75.3
Sabra04G0157100 Salix brachista HOM05D004172 ORTHO05D006010 3.1e-230 802.0 613 70.8
Nn5g26794 Nelumbo nucifera HOM05D004172 ORTHO05D006010 5.3e-230 801.2 570 73.7
SalBow6G2214 Salvia bowleyana HOM05D004172 ORTHO05D006010 6.9e-230 800.8 572 72.9
MSTRG.5032 Avicennia marina HOM05D004172 ORTHO05D006010 9.0e-230 800.4 566 73.1
Peaxi162Scf00019g00011 Petunia axillaris HOM05D004172 ORTHO05D006010 9.0e-230 800.4 555 75.1
CiPaw.10G166300 Carya illinoinensis HOM05D004172 ORTHO05D006010 1.5e-229 799.7 566 74.4
VMungo0331G1250 Vigna mungo HOM05D004172 ORTHO05D006010 3.4e-229 798.5 570 73.5
Haze_21203 Corylus avellana HOM05D004172 ORTHO05D006010 4.5e-229 798.1 703 63.2
Sc20g0007210 Simmondsia chinensis HOM05D004172 ORTHO05D006010 4.5e-229 798.1 578 72.7
PGSC0003DMG400006857 Solanum tuberosum HOM05D004172 ORTHO05D006010 2.9e-228 795.4 563 74.4
Sopen01g034500 Solanum pennellii HOM05D004172 ORTHO05D006010 5.0e-228 794.7 563 74.2
Solyc01g087530.3 Solanum lycopersicum HOM05D004172 ORTHO05D006010 1.1e-227 793.5 563 74.2
GSVIVG01029868001 Vitis vinifera HOM05D004172 ORTHO05D006010 1.4e-227 793.1 509 79.4
CAN.G219.48 Capsicum annuum HOM05D004172 ORTHO05D006010 4.6e-226 788.1 555 73.9
Aqoxy4G03306 Aquilegia oxysepala HOM05D004172 ORTHO05D006010 1.0e-225 786.9 564 74.1
Lj7P587T8 Lonicera japonica HOM05D004172 ORTHO05D006010 1.0e-225 786.9 573 72.4
Migut.N01780 Erythranthe guttata HOM05D004172 ORTHO05D006010 6.7e-225 784.3 581 72.1
Oeu006559.1 Olea europaea HOM05D004172 ORTHO05D006010 3.3e-224 781.9 600 70.3
Sabra06G0086400 Salix brachista HOM05D004172 ORTHO05D006010 3.3e-224 781.9 681 63.3
MBI15_g31039_MAGBIO Magnolia biondii HOM05D004172 ORTHO05D006010 1.3e-223 780.0 581 72.1
TAR633G1329 Trochodendron aralioides HOM05D004172 ORTHO05D006010 1.8e-222 776.2 557 74.5
DCAR_029461 Daucus carota HOM05D004172 ORTHO05D006010 1.5e-221 773.1 581 71.4
PSO017G1041 Papaver somniferum HOM05D004172 ORTHO05D006010 2.2e-220 769.2 575 72.5
ECA248G2273 Erigeron canadensis HOM05D004172 ORTHO05D006010 7.2e-219 764.2 597 68.5
PSO170G1455 Papaver somniferum HOM05D004172 ORTHO05D006010 9.4e-219 763.8 575 71.8
PSO502G0022 Papaver somniferum HOM05D004172 ORTHO05D006010 1.5e-216 756.5 575 71.3
Actinidia20804 Actinidia chinensis HOM05D004172 ORTHO05D006010 2.0e-216 756.1 579 70.6
Hund03687 Selenicereus undatus HOM05D004172 ORTHO05D006010 1.3e-215 753.4 584 69.0
AUR62029801 Chenopodium quinoa HOM05D004172 ORTHO05D006010 6.3e-215 751.1 576 68.2
AUR62006448 Chenopodium quinoa HOM05D004172 ORTHO05D006010 1.4e-214 750.0 575 68.2
Oeu049006.1 Olea europaea HOM05D004172 ORTHO05D006010 5.9e-213 744.6 585 69.9
Cc02_g28240 Coffea canephora HOM05D004172 ORTHO05D006010 1.3e-212 743.4 512 74.4
EL10Ac7g17137 Beta vulgaris HOM05D004172 ORTHO05D006010 2.9e-212 742.3 572 67.8
Ah.15g089820 Amaranthus hybridus HOM05D004172 ORTHO05D006010 1.9e-211 739.6 580 66.6
TAR636G0443 Trochodendron aralioides HOM05D004172 ORTHO05D006010 5.5e-211 738.0 570 70.2
ATR1127G216 Amborella trichopoda HOM05D004172 ORTHO05D006010 1.1e-208 730.3 563 68.9
CDE09G1233 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 4.4e-208 728.4 570 68.4
SHI12946 Sapria himalayana HOM05D004172 ORTHO05D006010 1.1e-206 723.8 575 67.0
Os05g0316100 Oryza sativa ssp. japonica HOM05D004172 ORTHO05D006010 1.6e-205 719.9 534 71.3
HPP92_026424 Vanilla planifolia HOM05D004172 ORTHO05D006010 8.8e-201 704.1 576 64.9
C03p44040 Brassica napus HOM05D004172 ORTHO05D006010 9.4e-195 684.1 383 93.5
Lsat_1_v5_gn_1_105840 Lactuca sativa HOM05D004172 ORTHO05D006010 4.7e-194 681.8 585 64.4
Zm00001eb408330 Zea mays HOM05D004172 ORTHO05D006010 7.7e-189 664.5 523 68.3
Potri.016G140500 Populus trichocarpa HOM05D004172 ORTHO05D006010 4.0e-185 652.1 576 62.5
unitig_747.g21293 Utricularia gibba HOM05D004172 ORTHO05D006010 9.2e-182 641.0 478 71.3
BraA01t04334Z Brassica rapa HOM05D004172 ORTHO05D006010 4.6e-181 638.6 372 91.1
CDE08G0114 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 2.2e-175 619.8 450 71.8
HanXRQChr01g0016071 Helianthus annuus HOM05D004172 ORTHO05D006010 8.1e-170 601.3 434 74.2
SEGI_23896 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 3.4e-168 595.9 478 66.3
vmacro08954 Vaccinium macrocarpon HOM05D004172 ORTHO05D006010 2.8e-162 576.2 507 64.3
SMO337G0001 Selaginella moellendorffii HOM05D004172 ORTHO05D006010 3.6e-162 575.9 538 59.5
Pp3c6_18720 Physcomitrium patens HOM05D004172 ORTHO05D006010 1.6e-138 497.3 521 52.0
CiPaw.09G223100 Carya illinoinensis HOM05D004172 ORTHO05D006010 6.2e-138 495.4 574 53.1
SGA_v2.0_scaffold5G02963 Striga asiatica HOM05D004172 ORTHO05D006010 1.3e-127 461.1 292 81.2
Actinidia32576 Actinidia chinensis HOM05D004172 ORTHO05D006010 7.2e-118 428.7 401 61.8
BcaB04g18578 Brassica carinata HOM05D004172 ORTHO05D006010 2.5e-115 420.2 292 78.8
COL.COLO4_05675 Corchorus olitorius HOM05D004172 ORTHO05D006010 1.6e-114 417.5 252 83.7
Mapoly0092s0078 Marchantia polymorpha HOM05D004172 ORTHO05D006010 4.2e-110 402.9 514 46.9
CSS0016172 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 1.4e-105 387.9 315 67.0
CBR_g164 Chara braunii HOM05D004172 ORTHO05D006010 2.9e-95 353.6 567 41.6
C03p44050 Brassica napus HOM05D004172 ORTHO05D006010 5.0e-95 352.8 210 90.5
Actinidia28546 Actinidia chinensis HOM05D004172 ORTHO05D006010 5.0e-79 299.7 228 71.1
SEGI_22351 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 1.9e-78 297.7 221 70.1
MCO09G526 Micromonas commoda HOM05D004172 ORTHO05D006010 3.7e-66 256.9 257 53.3
Cre06.g281900 Chlamydomonas reinhardtii HOM05D004172 ORTHO05D006010 2.6e-59 234.2 322 41.3
Medtr3g094870 Medicago truncatula HOM05D004172 ORTHO05D006010 2.4e-49 201.1 129 78.3
PRCOL_00003523 Prasinoderma coloniale HOM05D004172 ORTHO05D006010 4.1e-49 200.3 266 45.1
CSS0001306 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D000002 7.3e-38 162.9 130 64.6
HanXRQChr04g0127351 Helianthus annuus HOM05D004172 ORTHO05D006010 5.1e-31 140.2 137 57.7
BcaC02g10326 Brassica carinata HOM05D004172 ORTHO05D023965 6.7e-23 113.2 83 78.3
RcHm_v2.0_Chr3g0459981 Rosa chinensis HOM05D004172 ORTHO05D018193 1.3e-21 109.0 93 63.4
SEGI_04146 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 3.4e-19 100.9 198 40.4
RcHm_v2.0_Chr3g0460031 Rosa chinensis HOM05D004172 ORTHO05D018193 4.5e-19 100.5 91 61.5
C02p50100 Brassica napus HOM05D004172 ORTHO05D018193 1.7e-18 98.6 79 65.8
BolC2t11086H Brassica oleracea HOM05D004172 ORTHO05D018193 1.7e-18 98.6 79 65.8
Actinidia32575 Actinidia chinensis HOM05D004172 ORTHO05D006010 2.9e-18 97.8 50 86.0
QL07p004777 Quercus lobata HOM05D004172 ORTHO05D039478 3.8e-18 97.4 132 51.5
C04p30290 Brassica napus HOM05D004172 ORTHO05D023965 2.1e-16 91.7 70 75.7
BolC4t24562H Brassica oleracea HOM05D004172 ORTHO05D023965 2.1e-16 91.7 70 75.7
C01p21620 Brassica napus HOM05D004172 ORTHO05D023965 2.3e-15 88.2 70 72.9
HanXRQChr11g0335241 Helianthus annuus HOM05D004172 ORTHO05D006010 2.5e-14 84.7 52 84.6
BcaC07g38378 Brassica carinata HOM05D004172 ORTHO05D039478 1.3e-13 82.4 51 78.4
SEGI_20309 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 2.0e-11 75.1 59 64.4
BcaC09g50722 Brassica carinata HOM05D004172 ORTHO05D023965 1.3e-10 72.4 59 71.2
C03p65240 Brassica napus HOM05D004172 ORTHO05D018193 9.3e-09 66.2 30 100.0
BolC3t18777H Brassica oleracea HOM05D004172 ORTHO05D018193 9.3e-09 66.2 30 100.0
TAR633G1452 Trochodendron aralioides HOM05D004172 ORTHO05D414170 2.1e-08 65.1 57 56.1
BcaC05g28200 Brassica carinata HOM05D004381 ORTHO05D005200 2.3e-07 61.6 244 29.1
Actinidia28545 Actinidia chinensis HOM05D004172 ORTHO05D018193 5.7e-06 57.0 77 46.8


User provided reference genes

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