Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g29566 Brassica carinata HOM05D009282 ORTHO05D003486 9.3e-181 637.1 412 100.0
C05p59590 Brassica napus HOM05D009282 ORTHO05D003486 5.7e-122 441.8 421 75.5
BolC5t34614H Brassica oleracea HOM05D009282 ORTHO05D003486 6.3e-121 438.3 420 75.5
BraA05t22782Z Brassica rapa HOM05D009282 ORTHO05D003486 8.3e-113 411.4 415 70.1
A05p40490 Brassica napus HOM05D009282 ORTHO05D003486 2.0e-111 406.8 416 70.0
Sp3g06660 Schrenkiella parvula HOM05D009282 ORTHO05D003486 2.7e-95 353.2 287 70.7
SpUn0522_0010 Schrenkiella parvula HOM05D009282 ORTHO05D003486 6.2e-92 342.0 310 64.8
BraA01t04367Z Brassica rapa HOM05D009282 ORTHO05D003486 7.8e-79 298.5 265 64.9
Thhalv10020550m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 7.8e-79 298.5 284 63.7
BolC1t05537H Brassica oleracea HOM05D009282 ORTHO05D003486 2.4e-75 287.0 404 46.5
BcaB04g21273 Brassica carinata HOM05D009282 ORTHO05D003486 1.5e-69 267.7 249 62.7
Carub.0003s0731 Capsella rubella HOM05D009282 ORTHO05D003486 3.2e-56 223.4 254 53.9
CARHR082440 Cardamine hirsuta HOM05D009282 ORTHO05D003486 1.5e-53 214.5 284 51.4
AL3G19090 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 3.3e-53 213.4 253 54.5
AT3G07730 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 1.1e-51 208.4 240 55.8
AT4G01170 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 7.9e-47 192.2 241 53.1
Aa31LG7G5540 Aethionema arabicum HOM05D012602 ORTHO05D003486 3.1e-35 153.7 247 37.7
CARHR070750 Cardamine hirsuta HOM05D009282 ORTHO05D003486 2.0e-34 151.0 238 42.4
AL2G37450 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 5.9e-34 149.4 198 45.5
Carub.0002s2415 Capsella rubella HOM05D009282 ORTHO05D003486 1.0e-33 148.7 228 43.0
AT1G77270 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 2.9e-33 147.1 188 45.7
Sp5g32440 Schrenkiella parvula HOM05D009282 ORTHO05D003486 5.0e-33 146.4 207 45.9
AL1G34710 Arabidopsis lyrata HOM05D012602 ORTHO05D003486 1.6e-31 141.4 207 44.0
Carub.0001s2100 Capsella rubella HOM05D012602 ORTHO05D003486 7.9e-31 139.0 240 41.7
Thhalv10018476m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 7.9e-31 139.0 203 43.8
AT1G21560 Arabidopsis thaliana HOM05D012602 ORTHO05D003486 1.5e-29 134.8 208 42.8
Thhalv10007934m.g Eutrema salsugineum HOM05D012602 ORTHO05D003486 7.4e-29 132.5 237 37.6
BcaB05g25029 Brassica carinata HOM05D009282 ORTHO05D003486 9.7e-29 132.1 191 42.9
BraA02t07136Z Brassica rapa HOM05D009282 ORTHO05D003486 1.7e-28 131.3 191 43.5
A02p21190 Brassica napus HOM05D009282 ORTHO05D003486 2.8e-28 130.6 222 41.0
C02p34410 Brassica napus HOM05D009282 ORTHO05D003486 2.8e-28 130.6 222 40.5
BcaC03g15725 Brassica carinata HOM05D009282 ORTHO05D003486 1.4e-27 128.3 222 40.5
BolC2t09471H Brassica oleracea HOM05D009282 ORTHO05D003486 1.4e-27 128.3 222 40.5
CARHR021930 Cardamine hirsuta HOM05D012602 ORTHO05D003486 5.9e-26 122.9 256 36.3
CiPaw.03G184300 Carya illinoinensis HOM05D006236 ORTHO05D003486 5.0e-25 119.8 205 36.1
THA.LOC104812078 Tarenaya hassleriana HOM05D006236 ORTHO05D003486 5.0e-25 119.8 222 38.3
C05p20560 Brassica napus HOM05D012602 ORTHO05D003486 2.7e-23 114.0 237 33.3
BolC5t30754H Brassica oleracea HOM05D012602 ORTHO05D003486 2.7e-23 114.0 237 33.3
BcaC05g26073 Brassica carinata HOM05D012602 ORTHO05D003486 4.7e-23 113.2 237 33.3
THA.LOC104813683 Tarenaya hassleriana HOM05D009282 ORTHO05D003486 9.7e-21 105.5 196 33.7
A06p17650 Brassica napus HOM05D012602 ORTHO05D003486 1.3e-20 105.1 200 34.5
BraA06t24857Z Brassica rapa HOM05D012602 ORTHO05D003486 1.3e-20 105.1 200 34.5
Sp1g19100 Schrenkiella parvula HOM05D012602 ORTHO05D003486 3.7e-20 103.6 172 39.0
Aa31LG4G7280 Aethionema arabicum HOM05D009282 ORTHO05D003486 8.2e-20 102.4 146 41.8
Manes.02G169100 Manihot esculenta HOM05D006236 ORTHO05D003486 8.2e-20 102.4 210 31.4
Potri.002G077500 Populus trichocarpa HOM05D006236 ORTHO05D003486 1.8e-19 101.3 202 33.7
Ciclev10000428m.g Citrus clementina HOM05D006236 ORTHO05D003486 4.1e-19 100.1 187 36.9
PGR044G2319 Punica granatum HOM05D006236 ORTHO05D003486 2.2e-17 94.4 147 37.4
CAN.G1187.8 Capsicum annuum HOM05D012804 ORTHO05D003486 2.9e-17 94.0 112 41.1
Thecc.08G133800 Theobroma cacao HOM05D006236 ORTHO05D003486 3.2e-16 90.5 148 38.5
Sabra02G0060900 Salix brachista HOM05D006236 ORTHO05D003486 5.5e-16 89.7 164 37.2
Gohir.D02G077800 Gossypium hirsutum HOM05D006236 ORTHO05D003486 7.2e-16 89.4 211 32.7
GSVIVG01008800001 Vitis vinifera HOM05D006236 ORTHO05D003486 2.7e-15 87.4 214 30.8
Nitab4.5_0000205g0060 Nicotiana tabacum HOM05D012804 ORTHO05D003486 4.7e-15 86.7 110 38.2
QL09p032233 Quercus lobata HOM05D006236 ORTHO05D003486 6.1e-15 86.3 177 32.8
TWI60G0548 Tripterygium wilfordii HOM05D006236 ORTHO05D003486 6.1e-15 86.3 189 34.9
Oeu047174.1 Olea europaea HOM05D006236 ORTHO05D003486 8.0e-15 85.9 117 40.2
Peaxi162Scf00234g00718 Petunia axillaris HOM05D012804 ORTHO05D003486 5.2e-14 83.2 189 31.2
TAR625G0695 Trochodendron aralioides HOM05D006236 ORTHO05D003486 8.8e-14 82.4 104 44.2
Eucgr.E01002 Eucalyptus grandis HOM05D006236 ORTHO05D003486 1.2e-13 82.0 123 40.7
Glyma.14G156000 Glycine max HOM05D006236 ORTHO05D003486 1.2e-13 82.0 192 33.3
Psat0s1315g0200 Pisum sativum HOM05D006236 ORTHO05D003486 2.0e-13 81.3 198 35.4
Nn5g28446 Nelumbo nucifera HOM05D006236 ORTHO05D003486 2.6e-13 80.9 133 39.1
TPR.G32494 Trifolium pratense HOM05D006236 ORTHO05D003486 3.4e-13 80.5 177 32.8
MSTRG.24177 Avicennia marina HOM05D006236 ORTHO05D003486 4.4e-13 80.1 212 28.3
Duzib093G1452 Durio zibethinus HOM05D006236 ORTHO05D003486 4.4e-13 80.1 192 33.9
Dinv14700 Davidia involucrata HOM05D006236 ORTHO05D003486 5.7e-13 79.7 197 31.5
Nitab4.5_0011766g0010 Nicotiana tabacum HOM05D012804 ORTHO05D003486 5.7e-13 79.7 161 33.5
RcHm_v2.0_Chr6g0296811 Rosa chinensis HOM05D006236 ORTHO05D003486 5.7e-13 79.7 150 39.3
SGA_v2.0_scaffold28G11968 Striga asiatica HOM05D006236 ORTHO05D003486 7.5e-13 79.3 238 29.8
Atru.chr13.1589 Acer truncatum HOM05D006236 ORTHO05D003486 9.8e-13 79.0 173 32.4
DCAR_028204 Daucus carota HOM05D006236 ORTHO05D003486 9.8e-13 79.0 154 34.4
ClCG09G021830 Citrullus lanatus HOM05D006236 ORTHO05D003486 1.7e-12 78.2 187 30.5
FAN15G3020 Fragaria x ananassa HOM05D006236 ORTHO05D003486 1.7e-12 78.2 155 36.1
Medtr1g026790 Medicago truncatula HOM05D006236 ORTHO05D003486 1.7e-12 78.2 242 31.0
Nitab4.5_0001925g0210 Nicotiana tabacum HOM05D012804 ORTHO05D003486 1.7e-12 78.2 161 34.2
Solyc12g099920.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 2.2e-12 77.8 163 33.1
ATR0824G107 Amborella trichopoda HOM05D049392 ORTHO05D003486 2.8e-12 77.4 111 40.5
Migut.N03258 Erythranthe guttata HOM05D006236 ORTHO05D003486 2.8e-12 77.4 117 39.3
Lj1g0007441 Lotus japonicus HOM05D006236 ORTHO05D003486 3.7e-12 77.0 194 35.1
PGSC0003DMG400004651 Solanum tuberosum HOM05D012804 ORTHO05D003486 3.7e-12 77.0 153 34.0
Sopen12g034540 Solanum pennellii HOM05D012804 ORTHO05D003486 4.8e-12 76.6 196 30.1
SalBow2G2217 Salvia bowleyana HOM05D006236 ORTHO05D003486 6.3e-12 76.3 108 40.7
COL.COLO4_33391 Corchorus olitorius HOM05D006236 ORTHO05D003486 1.1e-11 75.5 177 34.5
Peaxi162Scf00062g00089 Petunia axillaris HOM05D012804 ORTHO05D003486 1.1e-11 75.5 110 37.3
QL12p002389 Quercus lobata HOM05D006236 ORTHO05D003486 1.1e-11 75.5 103 40.8
Glyma.13G034700 Glycine max HOM05D006236 ORTHO05D003486 2.4e-11 74.3 194 30.4
Medtr2g010820 Medicago truncatula HOM05D006236 ORTHO05D003486 2.4e-11 74.3 167 35.3
Phvul.001G067500 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 2.4e-11 74.3 133 36.1
CsaV3_7G022170 Cucumis sativus L. HOM05D006236 ORTHO05D003486 4.1e-11 73.6 189 30.7
CAN.G484.6 Capsicum annuum HOM05D012804 ORTHO05D003486 5.4e-11 73.2 150 34.0
CDE02G3425 Ceratophyllum demersum HOM05D006236 ORTHO05D003486 9.1e-11 72.4 136 34.6
Cfa012635 Carpinus fangiana HOM05D006236 ORTHO05D003486 1.2e-10 72.0 113 38.1
Manes.18G083050 Manihot esculenta HOM05D006236 ORTHO05D003486 1.2e-10 72.0 159 31.4
RcHm_v2.0_Chr6g0296801 Rosa chinensis HOM05D006236 ORTHO05D003486 1.2e-10 72.0 210 30.0
Gorai.005G087400 Gossypium raimondii HOM05D006236 ORTHO05D003486 1.6e-10 71.6 148 33.8
Sed0000792 Sechium edule HOM05D006236 ORTHO05D003486 1.6e-10 71.6 191 32.5
Glyma.04G206551 Glycine max HOM05D006236 ORTHO05D003486 2.0e-10 71.2 105 38.1
Os05g0423200 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 2.7e-10 70.9 101 41.6
Phvul.009G156700 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 2.7e-10 70.9 98 38.8
Prupe.1G488800 Prunus persica HOM05D006236 ORTHO05D003486 2.7e-10 70.9 113 34.5
FvH4_2g27990 Fragaria vesca HOM05D006236 ORTHO05D003486 4.5e-10 70.1 112 39.3
Medtr1g026800 Medicago truncatula HOM05D006236 ORTHO05D003486 5.9e-10 69.7 153 32.0
Actinidia15208 Actinidia chinensis HOM05D006236 ORTHO05D003486 7.7e-10 69.3 229 29.7
Sed0021928 Sechium edule HOM05D006236 ORTHO05D003486 7.7e-10 69.3 194 29.9
Oeu042695.1 Olea europaea HOM05D006236 ORTHO05D003486 1.0e-09 68.9 106 41.5
Pp3c14_13780 Physcomitrium patens HOM05D002377 ORTHO05D003486 1.0e-09 68.9 101 36.6
Cfa010576 Carpinus fangiana HOM05D006236 ORTHO05D003486 1.7e-09 68.2 225 26.2
Medtr1g026810 Medicago truncatula HOM05D006236 ORTHO05D003486 1.7e-09 68.2 189 31.2
SMO196G0029 Selaginella moellendorffii HOM05D002377 ORTHO05D003486 1.7e-09 68.2 125 35.2
Glyma.06G159000 Glycine max HOM05D006236 ORTHO05D003486 2.2e-09 67.8 105 37.1
SMO147G0016 Selaginella moellendorffii HOM05D006236 ORTHO05D003486 2.2e-09 67.8 168 31.0
Solyc11g072250.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 2.2e-09 67.8 112 32.1
Sopen11g029920 Solanum pennellii HOM05D012804 ORTHO05D003486 2.2e-09 67.8 112 32.1
TPR.G28699 Trifolium pratense HOM05D006236 ORTHO05D003486 2.2e-09 67.8 98 39.8
Lalb_Chr04g0253561 Lupinus albus HOM05D006236 ORTHO05D003486 2.9e-09 67.4 198 29.8
Gohir.A02G070600 Gossypium hirsutum HOM05D006236 ORTHO05D003486 5.0e-09 66.6 146 31.5
arahy.Tifrunner.gnm1.ann1.JAMD1N Arachis hypogaea HOM05D024686 ORTHO05D003486 6.5e-09 66.2 165 31.5
CiPaw.11G076600 Carya illinoinensis HOM05D006236 ORTHO05D003486 8.5e-09 65.9 99 41.4
Oeu016130.1 Olea europaea HOM05D006236 ORTHO05D003486 8.5e-09 65.9 140 32.1
VMungo1309G0219 Vigna mungo HOM05D006236 ORTHO05D003486 8.5e-09 65.9 101 38.6
arahy.Tifrunner.gnm1.ann1.Y133Z2 Arachis hypogaea HOM05D024686 ORTHO05D003486 1.1e-08 65.5 165 31.5
CANSAT78G0622 Cannabis sativa HOM05D006236 ORTHO05D003486 1.1e-08 65.5 121 34.7
TPR.G24541 Trifolium pratense HOM05D006236 ORTHO05D003486 1.1e-08 65.5 168 31.0
arahy.Tifrunner.gnm1.ann1.0TWQ75 Arachis hypogaea HOM05D024686 ORTHO05D003486 1.5e-08 65.1 171 30.4
FvH4_2g27980 Fragaria vesca HOM05D006236 ORTHO05D003486 1.5e-08 65.1 189 31.2
HPP92_008975 Vanilla planifolia HOM05D006236 ORTHO05D003486 1.5e-08 65.1 96 37.5
arahy.Tifrunner.gnm1.ann1.E8STVK Arachis hypogaea HOM05D024686 ORTHO05D003486 1.9e-08 64.7 165 30.9
Os04g0221000 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 1.9e-08 64.7 135 31.9
Dinv27264 Davidia involucrata HOM05D006236 ORTHO05D003486 2.5e-08 64.3 184 31.5
Cc00_g10350 Coffea canephora HOM05D006236 ORTHO05D003486 3.2e-08 63.9 182 28.0
Nitab4.5_0003471g0060 Nicotiana tabacum HOM05D012804 ORTHO05D003486 3.2e-08 63.9 111 33.3
Zm00001eb385310 Zea mays HOM05D006236 ORTHO05D003486 7.2e-08 62.8 91 46.2
Haze_03510 Corylus avellana HOM05D006236 ORTHO05D003486 9.5e-08 62.4 132 35.6
Lalb_Chr08g0237871 Lupinus albus HOM05D006236 ORTHO05D003486 9.5e-08 62.4 117 33.3
Psat5g058120 Pisum sativum HOM05D006236 ORTHO05D003486 9.5e-08 62.4 154 30.5
SEGI_21165 Sequoiadendron giganteum HOM05D029892 ORTHO05D003486 1.2e-07 62.0 111 38.7
CANSAT78G2054 Cannabis sativa HOM05D006236 ORTHO05D003486 1.6e-07 61.6 215 28.4
FAN20G3074 Fragaria x ananassa HOM05D006236 ORTHO05D003486 1.6e-07 61.6 189 30.2
AagrBONN_evm.TU.Sc2ySwM_228.1542 Anthoceros agrestis HOM05D002377 ORTHO05D003486 2.1e-07 61.2 123 38.2
Mapoly0015s0190 Marchantia polymorpha HOM05D006236 ORTHO05D003486 2.1e-07 61.2 124 32.3
arahy.Tifrunner.gnm1.ann1.BNP26P Arachis hypogaea HOM05D006236 ORTHO05D003486 2.7e-07 60.8 158 29.7
PSO528G0080 Papaver somniferum HOM05D020877 ORTHO05D003486 2.7e-07 60.8 127 36.2
CANSAT78G1984 Cannabis sativa HOM05D006236 ORTHO05D003486 3.6e-07 60.5 129 32.6
MD15G1133200 Malus domestica HOM05D006236 ORTHO05D003486 3.6e-07 60.5 156 30.8
TPR.G28151 Trifolium pratense HOM05D006236 ORTHO05D003486 4.7e-07 60.1 146 32.9
arahy.Tifrunner.gnm1.ann1.710PNE Arachis hypogaea HOM05D006236 ORTHO05D003486 6.1e-07 59.7 158 29.7
Ca_17011_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 6.1e-07 59.7 138 31.9
MELO3C012710.2 Cucumis melo HOM05D006236 ORTHO05D003486 8.0e-07 59.3 232 26.3
MD08G1159900 Malus domestica HOM05D006236 ORTHO05D003486 8.0e-07 59.3 141 34.0
PSO170G0742 Papaver somniferum HOM05D020877 ORTHO05D003486 8.0e-07 59.3 127 35.4
SEGI_20168 Sequoiadendron giganteum HOM05D029892 ORTHO05D003486 1.8e-06 58.2 125 32.0
CANSAT25G1833 Cannabis sativa HOM05D006236 ORTHO05D003486 3.0e-06 57.4 145 29.0
FAN15G0899 Fragaria x ananassa HOM05D006236 ORTHO05D003486 3.0e-06 57.4 158 27.8
Hund17351 Selenicereus undatus HOM05D031599 ORTHO05D003486 3.0e-06 57.4 94 34.0
Zm00001eb075330 Zea mays HOM05D006236 ORTHO05D003486 6.8e-06 56.2 107 29.9
Os04g0539100 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 8.8e-06 55.8 101 31.7


User provided reference genes

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