Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g29549 Brassica carinata HOM05D005998 ORTHO05D007664 3.8e-164 581.6 335 100.0
C05p59770 Brassica napus HOM05D005998 ORTHO05D007664 1.9e-139 499.6 295 100.0
BolC5t34631H Brassica oleracea HOM05D005998 ORTHO05D007664 2.5e-139 499.2 297 99.0
BraA05t22797Z Brassica rapa HOM05D005998 ORTHO05D007664 1.5e-125 453.4 300 79.0
BcaC05g29548 Brassica carinata HOM05D005998 ORTHO05D007664 1.5e-120 436.8 300 82.3
A05p40660 Brassica napus HOM05D005998 ORTHO05D007664 1.1e-118 430.6 300 75.3
Sp3g06470 Schrenkiella parvula HOM05D005998 ORTHO05D007664 7.0e-118 427.9 299 79.9
AT3G07550 Arabidopsis thaliana HOM05D005998 ORTHO05D007664 8.2e-111 404.4 300 75.7
AL3G18890 Arabidopsis lyrata HOM05D005998 ORTHO05D007664 5.3e-110 401.7 298 76.5
Thhalv10020882m.g Eutrema salsugineum HOM05D005998 ORTHO05D007664 1.0e-108 397.5 294 75.5
Carub.0003s0710 Capsella rubella HOM05D005998 ORTHO05D007664 1.2e-101 374.0 294 71.4
THA.LOC104819025 Tarenaya hassleriana HOM05D005998 ORTHO05D007664 3.7e-95 352.4 294 68.7
Aa31LG5G18090 Aethionema arabicum HOM05D005998 ORTHO05D007664 3.1e-94 349.4 294 67.7
CARHR082230 Cardamine hirsuta HOM05D005998 ORTHO05D007664 1.3e-87 327.4 290 67.9
TWI75G0247 Tripterygium wilfordii HOM05D005998 ORTHO05D007664 1.6e-77 293.9 300 63.7
Atru.chr6.3489 Acer truncatum HOM05D005998 ORTHO05D007664 1.5e-75 287.3 289 62.3
Lj2A1109T75 Lonicera japonica HOM05D005998 ORTHO05D007664 1.5e-75 287.3 299 57.2
RcHm_v2.0_Chr6g0281791 Rosa chinensis HOM05D005998 ORTHO05D007664 3.3e-75 286.2 287 64.1
Manes.13G057500 Manihot esculenta HOM05D005998 ORTHO05D007664 2.1e-74 283.5 289 65.1
Thecc.01G205300 Theobroma cacao HOM05D005998 ORTHO05D007664 6.2e-74 282.0 293 58.4
COL.COLO4_29925 Corchorus olitorius HOM05D005998 ORTHO05D007664 1.4e-73 280.8 289 57.4
Ciclev10015543m.g Citrus clementina HOM05D005998 ORTHO05D007664 3.4e-72 276.2 288 63.9
CANSAT25G0419 Cannabis sativa HOM05D005998 ORTHO05D007664 1.7e-71 273.9 288 55.6
Prupe.8G184400 Prunus persica HOM05D005998 ORTHO05D007664 6.4e-71 271.9 291 57.7
PSO017G2023 Papaver somniferum HOM05D005998 ORTHO05D007664 4.1e-70 269.2 297 60.3
QL09p045684 Quercus lobata HOM05D005998 ORTHO05D007664 9.2e-70 268.1 289 57.4
PSO573G0021 Papaver somniferum HOM05D005998 ORTHO05D007664 1.6e-69 267.3 301 52.5
PGR083G1807 Punica granatum HOM05D005998 ORTHO05D007664 3.9e-68 262.7 287 55.7
Cpa.g.sc8.24 Carica papaya HOM05D005998 ORTHO05D007664 8.6e-68 261.5 277 58.1
ECA236G1847 Erigeron canadensis HOM05D005998 ORTHO05D007664 8.6e-68 261.5 297 46.1
Actinidia23131 Actinidia chinensis HOM05D005998 ORTHO05D007664 1.5e-67 260.8 291 54.3
TAR362G0769 Trochodendron aralioides HOM05D005998 ORTHO05D007664 1.5e-67 260.8 287 60.6
HanXRQChr10g0281201 Helianthus annuus HOM05D005998 ORTHO05D007664 2.5e-67 260.0 298 51.3
Gohir.A11G144800 Gossypium hirsutum HOM05D005998 ORTHO05D007664 3.3e-67 259.6 288 55.6
Potri.017G056400 Populus trichocarpa HOM05D005998 ORTHO05D007664 4.3e-67 259.2 293 63.5
Gohir.D11G153100 Gossypium hirsutum HOM05D005998 ORTHO05D007664 1.6e-66 257.3 288 55.6
Gorai.007G162000 Gossypium raimondii HOM05D005998 ORTHO05D007664 1.6e-66 257.3 288 55.6
Sc05g0001600 Simmondsia chinensis HOM05D005998 ORTHO05D007664 4.0e-65 252.7 302 47.7
FvH4_2g17281 Fragaria vesca HOM05D005998 ORTHO05D007664 2.6e-64 250.0 286 59.8
MD05G1151800 Malus domestica HOM05D005998 ORTHO05D007664 2.6e-64 250.0 289 56.4
Cc02_g30680 Coffea canephora HOM05D005998 ORTHO05D007664 4.1e-62 242.7 300 51.3
Sabra17G0050000 Salix brachista HOM05D005998 ORTHO05D007664 1.6e-61 240.7 289 59.9
Eucgr.H00683 Eucalyptus grandis HOM05D005998 ORTHO05D007664 5.1e-60 235.7 301 58.5
Nitab4.5_0003952g0080 Nicotiana tabacum HOM05D005998 ORTHO05D007664 1.1e-59 234.6 301 51.5
CSS0043446 Camellia sinensis var. sinensis HOM05D005998 ORTHO05D007664 3.3e-59 233.0 267 54.3
Peaxi162Scf00372g00061 Petunia axillaris HOM05D005998 ORTHO05D007664 5.6e-59 232.3 301 50.8
PGSC0003DMG400020641 Solanum tuberosum HOM05D005998 ORTHO05D007664 3.6e-58 229.6 309 49.8
Nitab4.5_0002641g0010 Nicotiana tabacum HOM05D005998 ORTHO05D007664 1.1e-57 228.0 301 50.5
EL10Ac5g10571 Beta vulgaris HOM05D005998 ORTHO05D007664 1.4e-57 227.6 281 47.0
Solyc06g007680.1 Solanum lycopersicum HOM05D005998 ORTHO05D007664 1.8e-57 227.3 309 49.8
CAN.G181.48 Capsicum annuum HOM05D005998 ORTHO05D007664 5.8e-56 222.2 309 49.5
Sopen06g002580 Solanum pennellii HOM05D005998 ORTHO05D007664 5.8e-56 222.2 309 49.2
Sabra17G0048300 Salix brachista HOM05D005998 ORTHO05D007664 7.6e-56 221.9 276 59.1
Lsat_1_v5_gn_8_98580 Lactuca sativa HOM05D005998 ORTHO05D007664 7.8e-53 211.8 297 53.9
Migut.N00691 Erythranthe guttata HOM05D005998 ORTHO05D007664 2.3e-52 210.3 300 47.0
Hma1.2p1_1756F.1_g301020 Hydrangea macrophylla HOM05D005998 ORTHO05D007664 4.8e-50 202.6 305 45.6
Nn1g09548 Nelumbo nucifera HOM05D005998 ORTHO05D007664 5.3e-49 199.1 253 60.5
PSO573G0007 Papaver somniferum HOM05D005998 ORTHO05D007664 4.5e-48 196.1 335 48.7
Lsat_1_v5_gn_4_46380 Lactuca sativa HOM05D005998 ORTHO05D007664 5.8e-48 195.7 308 51.3
PSO017G6055 Papaver somniferum HOM05D005998 ORTHO05D007664 1.3e-47 194.5 328 48.8
PSO573G0042 Papaver somniferum HOM05D005998 ORTHO05D007664 1.7e-47 194.1 306 46.7
Duzib211G0440 Durio zibethinus HOM05D005998 ORTHO05D007664 2.4e-46 190.3 221 62.9
Haze_03601 Corylus avellana HOM05D005998 ORTHO05D007664 3.2e-46 189.9 322 37.9
HPP92_024394 Vanilla planifolia HOM05D005998 ORTHO05D007664 1.6e-45 187.6 306 48.0
SEGI_17775 Sequoiadendron giganteum HOM05D005998 ORTHO05D007664 3.0e-44 183.3 323 43.0
AUR62008051 Chenopodium quinoa HOM05D005998 ORTHO05D007664 2.1e-42 177.2 290 45.9
AUR62028626 Chenopodium quinoa HOM05D005998 ORTHO05D007664 6.2e-42 175.6 279 47.7
HanXRQChr08g0231291 Helianthus annuus HOM05D005998 ORTHO05D007664 1.1e-41 174.9 290 47.2
HanXRQChr08g0231301 Helianthus annuus HOM05D005998 ORTHO05D007664 1.1e-41 174.9 290 47.2
Lj3g0009731 Lotus japonicus HOM05D005998 ORTHO05D007664 5.3e-41 172.6 293 50.9
Cfa010674 Carpinus fangiana HOM05D005998 ORTHO05D007664 7.6e-40 168.7 286 45.1
HanXRQChr08g0231281 Helianthus annuus HOM05D005998 ORTHO05D007664 1.3e-39 167.9 301 43.5
Ca_23566_v3 Cicer arietinum L. HOM05D005998 ORTHO05D007664 4.9e-39 166.0 291 51.9
Psat4g158400 Pisum sativum HOM05D005998 ORTHO05D007664 6.4e-39 165.6 300 51.0
Medtr8g028140 Medicago truncatula HOM05D005998 ORTHO05D007664 1.9e-38 164.1 300 51.3
PSO017G3521 Papaver somniferum HOM05D005998 ORTHO05D007664 1.9e-38 164.1 309 43.0
ECA247G3308 Erigeron canadensis HOM05D005998 ORTHO05D007664 9.3e-38 161.8 300 41.7
Glyma.07G060100 Glycine max HOM05D005998 ORTHO05D007664 1.6e-37 161.0 291 50.5
Os11g0264200 Oryza sativa ssp. japonica HOM05D005998 ORTHO05D007664 3.5e-37 159.8 299 47.8
TPR.G5126 Trifolium pratense HOM05D005998 ORTHO05D007664 1.0e-36 158.3 302 50.0
RcHm_v2.0_Chr5g0064201 Rosa chinensis HOM05D005998 ORTHO05D007664 3.1e-33 146.7 186 51.6
Dinv28780 Davidia involucrata HOM05D005998 ORTHO05D003775 6.9e-33 145.6 106 62.3
ATR0743G036 Amborella trichopoda HOM05D005998 ORTHO05D007664 2.0e-32 144.1 282 46.1
Zm00001eb112540 Zea mays HOM05D005998 ORTHO05D007664 4.5e-32 142.9 298 44.6
RcHm_v2.0_Chr7g0205731 Rosa chinensis HOM05D005998 ORTHO05D007664 4.9e-31 139.4 101 65.3
PSO017G0196 Papaver somniferum HOM05D005998 ORTHO05D007664 5.5e-30 136.0 301 36.2
MD10G1146000 Malus domestica HOM05D005998 ORTHO05D007664 1.0e-28 131.7 283 47.3
ECA247G2512 Erigeron canadensis HOM05D005998 ORTHO05D007664 1.3e-28 131.3 311 29.6
ECA247G1983 Erigeron canadensis HOM05D005998 ORTHO05D007664 1.6e-26 124.4 318 28.3
Duzib138G0171 Durio zibethinus HOM05D005998 ORTHO05D007664 2.2e-26 124.0 98 60.2
ECA232G4734 Erigeron canadensis HOM05D005998 ORTHO05D007664 1.4e-25 121.3 292 39.0
PSO675G7594 Papaver somniferum HOM05D005998 ORTHO05D007664 3.1e-25 120.2 311 35.4
PSO541G3130 Papaver somniferum HOM05D005998 ORTHO05D007664 4.1e-25 119.8 308 36.0
DCAR_000509 Daucus carota HOM05D005998 ORTHO05D007664 5.3e-25 119.4 163 53.4
Mapoly0166s0007 Marchantia polymorpha HOM05D005998 ORTHO05D007664 2.0e-24 117.5 292 40.4
CDE08G0319 Ceratophyllum demersum HOM05D005998 ORTHO05D007664 4.5e-24 116.3 104 51.9
Zm00001eb182340 Zea mays HOM05D005998 ORTHO05D015715 2.1e-21 107.5 106 50.0
PSO837G0060 Papaver somniferum HOM05D005998 ORTHO05D007664 7.9e-21 105.5 294 36.4
PSO218G0001 Papaver somniferum HOM05D005998 ORTHO05D007664 1.4e-20 104.8 300 34.3
PSO340G0001 Papaver somniferum HOM05D005998 ORTHO05D007664 1.4e-20 104.8 300 34.3
PSO675G6053 Papaver somniferum HOM05D005998 ORTHO05D007664 1.4e-20 104.8 300 34.3
PSO675G6885 Papaver somniferum HOM05D005998 ORTHO05D007664 1.4e-20 104.8 300 34.3
Rhsim13G0055600 Rhododendron simsii HOM05D005998 ORTHO05D007664 1.8e-20 104.4 300 28.0
PSO017G5443 Papaver somniferum HOM05D005998 ORTHO05D007664 6.7e-20 102.4 252 38.5
Zm00001eb048880 Zea mays HOM05D005998 ORTHO05D015715 1.9e-19 100.9 106 48.1
PSO675G8174 Papaver somniferum HOM05D005998 ORTHO05D007664 1.3e-18 98.2 300 34.0
ECA247G3549 Erigeron canadensis HOM05D005998 ORTHO05D007664 1.7e-18 97.8 302 38.7
ECA247G2923 Erigeron canadensis HOM05D005998 ORTHO05D003386 6.9e-17 92.4 284 41.5
PSO837G0015 Papaver somniferum HOM05D005998 ORTHO05D007664 5.9e-16 89.4 322 32.9
Oeu064702.2 Olea europaea HOM05D005998 ORTHO05D007664 1.1e-14 85.1 135 37.0
PSO017G6716 Papaver somniferum HOM05D005998 ORTHO05D007664 1.4e-14 84.7 272 36.4
ECA247G1593 Erigeron canadensis HOM05D005998 ORTHO05D007664 1.2e-13 81.6 247 26.7
PSO017G4719 Papaver somniferum HOM05D005998 ORTHO05D007664 1.0e-12 78.6 141 37.6
ECA247G1907 Erigeron canadensis HOM05D005998 ORTHO05D007664 3.9e-12 76.6 100 40.0
PSO017G6639 Papaver somniferum HOM05D005998 ORTHO05D007664 1.1e-11 75.1 170 32.9
PSO017G2859 Papaver somniferum HOM05D005998 ORTHO05D007664 2.2e-10 70.9 237 36.7
HanXRQChr05g0140811 Helianthus annuus HOM05D001993 ORTHO05D009037 3.1e-09 67.0 157 30.6
PSO017G0268 Papaver somniferum HOM05D005998 ORTHO05D007664 9.1e-09 65.5 141 34.8
PSO017G7250 Papaver somniferum HOM05D005998 ORTHO05D007664 1.5e-08 64.7 252 35.3
PSO017G7319 Papaver somniferum HOM05D005998 ORTHO05D007664 1.5e-08 64.7 107 33.6
PSO541G0922 Papaver somniferum HOM05D005998 ORTHO05D007664 1.5e-08 64.7 195 35.9
PSO675G5104 Papaver somniferum HOM05D005998 ORTHO05D007664 1.5e-08 64.7 228 33.8
CDE05G3454 Ceratophyllum demersum HOM05D002125 ORTHO05D002105 6.5e-07 59.3 302 25.8
BolC2t09726H Brassica oleracea HOM05D001993 ORTHO05D009037 2.5e-06 57.4 165 26.1
PSO017G5922 Papaver somniferum HOM05D005998 ORTHO05D007664 2.5e-06 57.4 106 27.4
A02p23440 Brassica napus HOM05D002499 ORTHO05D009037 5.5e-06 56.2 156 27.6
CDE05G1651 Ceratophyllum demersum HOM05D001993 ORTHO05D009037 5.5e-06 56.2 156 27.6
Lsat_1_v5_gn_5_7881 Lactuca sativa HOM05D001993 ORTHO05D009037 5.5e-06 56.2 138 29.7
C02p37140 Brassica napus HOM05D002499 ORTHO05D002812 7.2e-06 55.8 165 25.5
Lsat_1_v5_gn_1_22481 Lactuca sativa HOM05D001905 ORTHO05D001820 9.4e-06 55.5 162 28.4


User provided reference genes

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