Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g29538 Brassica carinata HOM05D006548 ORTHO05D008064 3.8e-52 208.0 112 100.0
BolC5t34638H Brassica oleracea HOM05D006548 ORTHO05D008064 1.5e-48 196.1 106 98.1
C05p59840 Brassica napus HOM05D006548 ORTHO05D008064 2.2e-47 192.2 106 96.2
BcaC05g29539 Brassica carinata HOM05D006548 ORTHO05D008064 8.2e-47 190.3 110 93.6
A05p40730 Brassica napus HOM05D006548 ORTHO05D008064 3.1e-46 188.3 106 96.2
BraA05t22804Z Brassica rapa HOM05D006548 ORTHO05D008064 3.1e-46 188.3 106 96.2
BcaB03g14699 Brassica carinata HOM05D006548 ORTHO05D008064 3.3e-40 168.3 106 84.9
Sp3g06390 Schrenkiella parvula HOM05D006548 ORTHO05D008064 1.3e-39 166.4 113 82.3
Carub.0003s0703 Capsella rubella HOM05D006548 ORTHO05D008064 2.8e-39 165.2 108 84.3
AL3G18800 Arabidopsis lyrata HOM05D006548 ORTHO05D008064 3.7e-39 164.9 108 84.3
AT3G07480 Arabidopsis thaliana HOM05D006548 ORTHO05D008064 3.7e-39 164.9 108 84.3
Thhalv10021677m.g Eutrema salsugineum HOM05D006548 ORTHO05D008064 2.4e-38 162.2 110 80.9
CARHR082130 Cardamine hirsuta HOM05D006548 ORTHO05D008064 5.3e-38 161.0 112 78.6
Aa31LG5G18040 Aethionema arabicum HOM05D006548 ORTHO05D008064 1.9e-35 152.5 112 75.0
THA.LOC104819003 Tarenaya hassleriana HOM05D006548 ORTHO05D008064 5.1e-33 144.4 115 69.6
Atru.chr6.3534 Acer truncatum HOM05D006548 ORTHO05D008064 2.4e-30 135.6 108 70.4
Potri.002G239000 Populus trichocarpa HOM05D006548 ORTHO05D008064 2.0e-29 132.5 110 68.2
Gohir.A11G143200 Gossypium hirsutum HOM05D006548 ORTHO05D008064 2.6e-29 132.1 105 67.6
Gorai.007G160300 Gossypium raimondii HOM05D006548 ORTHO05D008064 2.6e-29 132.1 105 67.6
COL.COLO4_06931 Corchorus olitorius HOM05D006548 ORTHO05D008064 4.5e-29 131.3 107 66.4
Gohir.D11G149500 Gossypium hirsutum HOM05D006548 ORTHO05D008064 5.9e-29 131.0 103 68.9
Sabra02G0182000 Salix brachista HOM05D006548 ORTHO05D008064 7.7e-29 130.6 110 68.2
Ah.11g050830 Amaranthus hybridus HOM05D006548 ORTHO05D008064 1.3e-28 129.8 106 69.8
Lj2P1115T39 Lonicera japonica HOM05D006548 ORTHO05D008064 1.3e-28 129.8 107 70.1
Peaxi162Scf00372g00041 Petunia axillaris HOM05D006548 ORTHO05D008064 1.3e-28 129.8 103 66.0
Thecc.01G209700 Theobroma cacao HOM05D006548 ORTHO05D008064 2.9e-28 128.6 104 67.3
Manes.13G055300 Manihot esculenta HOM05D006548 ORTHO05D008064 3.8e-28 128.3 108 64.8
TAR362G1118 Trochodendron aralioides HOM05D006548 ORTHO05D008064 3.8e-28 128.3 108 66.7
Ciclev10017030m.g Citrus clementina HOM05D006548 ORTHO05D008064 5.0e-28 127.9 107 66.4
RcHm_v2.0_Chr6g0282621 Rosa chinensis HOM05D006548 ORTHO05D008064 5.0e-28 127.9 105 65.7
Sabra14G0135300 Salix brachista HOM05D006548 ORTHO05D008064 5.0e-28 127.9 107 67.3
Manes.12G059600 Manihot esculenta HOM05D006548 ORTHO05D008064 6.5e-28 127.5 103 67.0
TWI18G0731 Tripterygium wilfordii HOM05D006548 ORTHO05D008064 8.5e-28 127.1 109 64.2
Rhsim13G0053600 Rhododendron simsii HOM05D006548 ORTHO05D008064 1.1e-27 126.7 110 65.5
Cpa.g.sc8.57 Carica papaya HOM05D004405 ORTHO05D005613 1.9e-27 125.9 111 64.9
FAN24G3284 Fragaria x ananassa HOM05D006548 ORTHO05D008064 1.9e-27 125.9 103 66.0
MBI08_g14954_MAGBIO Magnolia biondii HOM05D006659 ORTHO05D008064 1.9e-27 125.9 102 69.6
Gohir.D07G202600 Gossypium hirsutum HOM05D006548 ORTHO05D008064 2.5e-27 125.6 104 64.4
Gorai.001G228000 Gossypium raimondii HOM05D006548 ORTHO05D008064 2.5e-27 125.6 104 64.4
Nitab4.5_0011925g0010 Nicotiana tabacum HOM05D006548 ORTHO05D008064 2.5e-27 125.6 108 66.7
PSO017G5831 Papaver somniferum HOM05D006548 ORTHO05D008064 2.5e-27 125.6 103 65.0
PSO675G8742 Papaver somniferum HOM05D006548 ORTHO05D008064 2.5e-27 125.6 103 68.0
FvH4_2g17650 Fragaria vesca HOM05D006548 ORTHO05D008064 3.2e-27 125.2 105 64.8
FAN27G0042 Fragaria x ananassa HOM05D006548 ORTHO05D008064 3.2e-27 125.2 105 64.8
FAN27G0390 Fragaria x ananassa HOM05D006548 ORTHO05D008064 3.2e-27 125.2 105 64.8
Nn3g18599 Nelumbo nucifera HOM05D006548 ORTHO05D008064 3.2e-27 125.2 106 67.0
vmacro02826 Vaccinium macrocarpon HOM05D006548 ORTHO05D008064 4.2e-27 124.8 110 64.5
CiPaw.13G058400 Carya illinoinensis HOM05D006548 ORTHO05D008064 5.5e-27 124.4 100 66.0
Lalb_Chr03g0040981 Lupinus albus HOM05D006548 ORTHO05D008064 7.2e-27 124.0 104 66.3
Nitab4.5_0002311g0090 Nicotiana tabacum HOM05D006548 ORTHO05D008064 9.4e-27 123.6 106 67.0
Potri.014G177100 Populus trichocarpa HOM05D006548 ORTHO05D008064 9.4e-27 123.6 107 64.5
PGR083G0463 Punica granatum HOM05D006548 ORTHO05D008064 9.4e-27 123.6 107 62.6
VMungo1383G2587 Vigna mungo HOM05D006548 ORTHO05D008064 9.4e-27 123.6 104 64.4
ATR0824G029 Amborella trichopoda HOM05D006548 ORTHO05D008064 1.6e-26 122.9 81 74.1
Aqoxy2G04054 Aquilegia oxysepala HOM05D006548 ORTHO05D008064 1.6e-26 122.9 107 62.6
DCAR_030798 Daucus carota HOM05D006548 ORTHO05D008064 1.6e-26 122.9 104 64.4
AUR62028648 Chenopodium quinoa HOM05D006548 ORTHO05D008064 2.1e-26 122.5 108 60.2
Nitab4.5_0001348g0010 Nicotiana tabacum HOM05D006548 ORTHO05D008064 2.1e-26 122.5 109 63.3
Nitab4.5_0007144g0040 Nicotiana tabacum HOM05D006548 ORTHO05D008064 2.1e-26 122.5 109 63.3
SGA_v2.0_scaffold95G28706 Striga asiatica HOM05D006548 ORTHO05D008064 2.1e-26 122.5 105 64.8
TWI75G1339 Tripterygium wilfordii HOM05D006548 ORTHO05D008064 2.7e-26 122.1 109 63.3
Glyma.08G343100 Glycine max HOM05D006548 ORTHO05D008064 3.6e-26 121.7 103 62.1
CSS0021481 Camellia sinensis var. sinensis HOM05D006548 ORTHO05D008064 4.7e-26 121.3 107 65.4
Duzib138G0849 Durio zibethinus HOM05D006548 ORTHO05D008064 4.7e-26 121.3 104 63.5
CAN.G874.34 Capsicum annuum HOM05D006548 ORTHO05D008064 6.1e-26 120.9 106 62.3
MSTRG.17967 Avicennia marina HOM05D006548 ORTHO05D008064 1.0e-25 120.2 104 63.5
Nn4g25121 Nelumbo nucifera HOM05D006548 ORTHO05D008064 1.0e-25 120.2 106 65.1
Solyc06g007630.1 Solanum lycopersicum HOM05D006548 ORTHO05D008064 1.0e-25 120.2 69 82.6
Sopen06g002520 Solanum pennellii HOM05D006548 ORTHO05D008064 1.0e-25 120.2 69 82.6
Sopen06g034400 Solanum pennellii HOM05D006548 ORTHO05D008064 1.0e-25 120.2 103 62.1
Sed0004612 Sechium edule HOM05D006548 ORTHO05D008064 1.4e-25 119.8 108 63.0
Phvul.008G137800 Phaseolus vulgaris HOM05D006548 ORTHO05D008064 1.8e-25 119.4 109 61.5
TWI36G0698 Tripterygium wilfordii HOM05D006548 ORTHO05D008064 2.3e-25 119.0 109 63.3
HanXRQChr08g0231851 Helianthus annuus HOM05D006548 ORTHO05D008064 3.0e-25 118.6 102 67.6
Sc05g0001680 Simmondsia chinensis HOM05D006548 ORTHO05D008064 3.0e-25 118.6 102 63.7
Cc01_g16030 Coffea canephora HOM05D006548 ORTHO05D008064 3.9e-25 118.2 105 62.9
PGSC0003DMG400020639 Solanum tuberosum HOM05D006548 ORTHO05D008064 3.9e-25 118.2 69 79.7
PGSC0003DMG400027686 Solanum tuberosum HOM05D006548 ORTHO05D008064 3.9e-25 118.2 103 60.2
unitig_61.g26345 Utricularia gibba HOM05D006548 ORTHO05D008064 3.9e-25 118.2 97 66.0
arahy.Tifrunner.gnm1.ann1.C7NXRU Arachis hypogaea HOM05D006548 ORTHO05D008064 5.2e-25 117.9 113 61.9
Duzib211G0675 Durio zibethinus HOM05D006548 ORTHO05D008064 5.2e-25 117.9 109 56.9
Lsat_1_v5_gn_9_16480 Lactuca sativa HOM05D006548 ORTHO05D008064 5.2e-25 117.9 101 68.3
arahy.Tifrunner.gnm1.ann1.I0E60T Arachis hypogaea HOM05D006548 ORTHO05D008064 6.7e-25 117.5 113 61.9
Hma1.2p1_0161F.1_g071510 Hydrangea macrophylla HOM05D006548 ORTHO05D008064 6.7e-25 117.5 107 61.7
Migut.N00670 Erythranthe guttata HOM05D006548 ORTHO05D008064 8.8e-25 117.1 109 60.6
Oeu051515.1 Olea europaea HOM05D006548 ORTHO05D008064 8.8e-25 117.1 104 63.5
ClCG09G007890 Citrullus lanatus HOM05D006548 ORTHO05D008064 1.1e-24 116.7 113 61.9
EL10Ac5g10597 Beta vulgaris HOM05D006548 ORTHO05D008064 5.7e-24 114.4 71 78.9
MELO3C015717.2 Cucumis melo HOM05D006548 ORTHO05D008064 5.7e-24 114.4 113 59.3
Glyma.18G153900 Glycine max HOM05D006548 ORTHO05D008064 7.4e-24 114.0 106 60.4
Zm00001eb102720 Zea mays HOM05D006548 ORTHO05D008064 7.4e-24 114.0 94 64.9
Cfa010631 Carpinus fangiana HOM05D006548 ORTHO05D008064 9.7e-24 113.6 104 60.6
HPP92_002744 Vanilla planifolia HOM05D006548 ORTHO05D008064 9.7e-24 113.6 80 67.5
Ca_07442_v3 Cicer arietinum L. HOM05D006548 ORTHO05D008064 1.3e-23 113.2 101 59.4
CsaV3_7G027180 Cucumis sativus L. HOM05D006548 ORTHO05D008064 1.7e-23 112.8 113 59.3
Prupe.8G188900 Prunus persica HOM05D006548 ORTHO05D008064 2.2e-23 112.5 100 60.0
ECA247G0922 Erigeron canadensis HOM05D006548 ORTHO05D008064 2.8e-23 112.1 89 66.3
Lj1g0008534 Lotus japonicus HOM05D006548 ORTHO05D008064 3.7e-23 111.7 107 59.8
Lalb_Chr01g0021941 Lupinus albus HOM05D006548 ORTHO05D008064 3.7e-23 111.7 107 60.7
MD10G1150500 Malus domestica HOM05D006548 ORTHO05D008064 4.8e-23 111.3 101 64.4
Haze_03573 Corylus avellana HOM05D006548 ORTHO05D008064 8.2e-23 110.5 110 59.1
QL09p047049 Quercus lobata HOM05D006548 ORTHO05D008064 8.2e-23 110.5 100 62.0
TPR.G26806 Trifolium pratense HOM05D006548 ORTHO05D008064 1.1e-22 110.2 103 58.3
Psat3g151760 Pisum sativum HOM05D006548 ORTHO05D008064 1.4e-22 109.8 104 56.7
CSS0032607 Camellia sinensis var. sinensis HOM05D006548 ORTHO05D008064 1.8e-22 109.4 113 57.5
Os09g0514600 Oryza sativa ssp. japonica HOM05D006548 ORTHO05D008064 1.8e-22 109.4 89 60.7
Medtr7g051230 Medicago truncatula HOM05D006548 ORTHO05D008064 2.4e-22 109.0 101 55.4
GSVIVG01003797001 Vitis vinifera HOM05D006548 ORTHO05D008064 1.2e-21 106.7 69 69.6
CANSAT01G2941 Cannabis sativa HOM05D006548 ORTHO05D008064 1.6e-21 106.3 112 52.7
Zm00001eb318350 Zea mays HOM05D006548 ORTHO05D008064 2.9e-20 102.1 67 70.1
Ciclev10013747m.g Citrus clementina HOM05D006548 ORTHO05D008064 3.2e-19 98.6 65 70.8
Pp3c2_31000 Physcomitrium patens HOM05D006548 ORTHO05D008064 1.4e-17 93.2 80 56.2
SEGI_16405 Sequoiadendron giganteum HOM05D002489 ORTHO05D002653 1.5e-16 89.7 74 66.2
AagrBONN_evm.TU.Sc2ySwM_362.984 Anthoceros agrestis HOM05D006548 ORTHO05D008064 4.8e-15 84.7 99 46.5
Gohir.A07G196200 Gossypium hirsutum HOM05D006548 ORTHO05D008064 6.3e-15 84.3 47 80.9
Mapoly0085s0036 Marchantia polymorpha HOM05D006548 ORTHO05D008064 2.2e-12 75.9 100 44.0
BcaC01g02172 Brassica carinata HOM05D006548 ORTHO05D008064 3.6e-10 68.6 39 84.6
C03p67920 Brassica napus HOM05D006548 ORTHO05D008064 3.6e-10 68.6 39 84.6
Actinidia30005 Actinidia chinensis HOM05D006548 ORTHO05D008064 8.0e-10 67.4 81 56.8


User provided reference genes

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