Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g29536 Brassica carinata HOM05D007237 ORTHO05D008854 1.2e-52 209.5 102 100.0
BraA05t22806Z Brassica rapa HOM05D007237 ORTHO05D008854 1.7e-38 162.5 89 91.0
A05p40750 Brassica napus HOM05D007237 ORTHO05D008854 3.7e-38 161.4 89 89.9
C05p59860 Brassica napus HOM05D007237 ORTHO05D008854 1.4e-37 159.5 89 88.8
BolC5t34640H Brassica oleracea HOM05D007237 ORTHO05D008854 1.4e-37 159.5 89 88.8
AT3G07450 Arabidopsis thaliana HOM05D007237 ORTHO05D008854 6.1e-33 144.1 88 78.4
Carub.0003s0700 Capsella rubella HOM05D007237 ORTHO05D008854 1.4e-32 142.9 88 77.3
AL3G18770 Arabidopsis lyrata HOM05D007237 ORTHO05D008854 5.7e-31 137.5 79 81.0
CARHR082100 Cardamine hirsuta HOM05D007237 ORTHO05D008854 5.7e-31 137.5 88 73.9
Thhalv10022125m.g Eutrema salsugineum HOM05D007237 ORTHO05D008854 1.8e-29 132.5 65 93.8
BraA03t12704Z Brassica rapa HOM05D007237 ORTHO05D008854 2.4e-29 132.1 88 70.5
C03p42880 Brassica napus HOM05D007237 ORTHO05D008854 3.1e-29 131.7 88 70.5
BolC3t16556H Brassica oleracea HOM05D007237 ORTHO05D008854 3.1e-29 131.7 88 70.5
A03p35260 Brassica napus HOM05D007237 ORTHO05D008854 7.0e-29 130.6 88 70.5
BcaC01g04282 Brassica carinata HOM05D007237 ORTHO05D008854 1.2e-28 129.8 79 77.2
BcaB03g14701 Brassica carinata HOM05D007237 ORTHO05D008854 1.6e-28 129.4 88 69.3
ECA234G1833 Erigeron canadensis HOM05D007237 ORTHO05D008854 4.0e-24 114.8 88 59.1
Potri.001G271000 Populus trichocarpa HOM05D007237 ORTHO05D008854 8.9e-24 113.6 78 62.8
HanXRQChr16g0519611 Helianthus annuus HOM05D007237 ORTHO05D008854 2.0e-23 112.5 89 60.7
SGA_v2.0_scaffold95G28787 Striga asiatica HOM05D000288 ORTHO05D000173 2.0e-23 112.5 86 58.1
HanXRQChr17g0563491 Helianthus annuus HOM05D007237 ORTHO05D008854 2.6e-23 112.1 89 59.6
Sc11g0009340 Simmondsia chinensis HOM05D007237 ORTHO05D008854 2.6e-23 112.1 89 56.2
Ciclev10033078m.g Citrus clementina HOM05D007237 ORTHO05D008854 3.4e-23 111.7 79 58.2
Peaxi162Scf00428g01024 Petunia axillaris HOM05D007237 ORTHO05D008854 4.4e-23 111.3 80 60.0
Migut.O00928 Erythranthe guttata HOM05D007237 ORTHO05D008854 5.7e-23 110.9 87 56.3
Lsat_1_v5_gn_4_46201 Lactuca sativa HOM05D007237 ORTHO05D008854 5.7e-23 110.9 79 63.3
EL10Ac2g04307 Beta vulgaris HOM05D007237 ORTHO05D008854 9.8e-23 110.2 100 51.0
Sabra16G0166400 Salix brachista HOM05D007237 ORTHO05D008854 1.3e-22 109.8 78 62.8
SalBow4G0796 Salvia bowleyana HOM05D007237 ORTHO05D008854 1.3e-22 109.8 79 58.2
MSTRG.28082 Avicennia marina HOM05D007237 ORTHO05D008854 1.7e-22 109.4 79 58.2
Hma1.2p1_0845F.1_g227580 Hydrangea macrophylla HOM05D007237 ORTHO05D008854 1.7e-22 109.4 79 60.8
CSS0046270 Camellia sinensis var. sinensis HOM05D007237 ORTHO05D008854 3.7e-22 108.2 79 60.8
Manes.07G003400 Manihot esculenta HOM05D007237 ORTHO05D008854 3.7e-22 108.2 79 58.2
Manes.10G147700 Manihot esculenta HOM05D007237 ORTHO05D008854 3.7e-22 108.2 85 52.9
Glyma.08G152200 Glycine max HOM05D007237 ORTHO05D008854 4.9e-22 107.8 86 53.5
HanXRQChr11g0330541 Helianthus annuus HOM05D007237 ORTHO05D008854 6.3e-22 107.5 89 55.1
Solyc01g086830.4 Solanum lycopersicum HOM05D007237 ORTHO05D008854 6.3e-22 107.5 85 55.3
Atru.chr11.2633 Acer truncatum HOM05D007237 ORTHO05D008854 8.3e-22 107.1 79 57.0
Eucgr.J01258 Eucalyptus grandis HOM05D007237 ORTHO05D008854 8.3e-22 107.1 89 53.9
Dinv43468 Davidia involucrata HOM05D007237 ORTHO05D008854 1.8e-21 105.9 83 55.4
QL04p004894 Quercus lobata HOM05D007237 ORTHO05D008854 1.8e-21 105.9 79 60.8
MD07G1005700 Malus domestica HOM05D007237 ORTHO05D008854 2.4e-21 105.5 79 57.0
Sopen01g033840 Solanum pennellii HOM05D007237 ORTHO05D008854 2.4e-21 105.5 81 56.8
Cc02_g27480 Coffea canephora HOM05D007237 ORTHO05D008854 3.1e-21 105.1 81 58.0
Glyma.15G271600 Glycine max HOM05D007237 ORTHO05D008854 4.1e-21 104.8 86 52.3
Psat5g205480 Pisum sativum HOM05D007237 ORTHO05D008854 4.1e-21 104.8 85 54.1
Thecc.01G414400 Theobroma cacao HOM05D007237 ORTHO05D008854 4.1e-21 104.8 78 60.3
Duzib138G0953 Durio zibethinus HOM05D007237 ORTHO05D008854 5.4e-21 104.4 78 60.3
Gohir.A08G146000 Gossypium hirsutum HOM05D007237 ORTHO05D008854 5.4e-21 104.4 81 56.8
CAN.G1393.1 Capsicum annuum HOM05D007237 ORTHO05D008854 7.0e-21 104.0 81 56.8
Oeu036183.1 Olea europaea HOM05D000288 ORTHO05D008854 9.2e-21 103.6 81 53.1
Oeu036184.1 Olea europaea HOM05D007237 ORTHO05D008854 9.2e-21 103.6 81 53.1
Gohir.D08G166900 Gossypium hirsutum HOM05D007237 ORTHO05D008854 1.2e-20 103.2 81 56.8
Gorai.004G174300 Gossypium raimondii HOM05D007237 ORTHO05D008854 1.2e-20 103.2 81 56.8
MD02G1316200 Malus domestica HOM05D007237 ORTHO05D008854 1.2e-20 103.2 79 58.2
Gohir.A12G094200 Gossypium hirsutum HOM05D007237 ORTHO05D008854 2.7e-20 102.1 79 55.7
Prupe.2G008100 Prunus persica HOM05D007237 ORTHO05D008854 2.7e-20 102.1 79 54.4
CiPaw.13G002300 Carya illinoinensis HOM05D007237 ORTHO05D008854 3.5e-20 101.7 78 59.0
MBI04_g14266_MAGBIO Magnolia biondii HOM05D007237 ORTHO05D008854 3.5e-20 101.7 89 52.8
Gorai.008G105400 Gossypium raimondii HOM05D007237 ORTHO05D008854 5.9e-20 100.9 79 55.7
TPR.G12234 Trifolium pratense HOM05D007237 ORTHO05D008854 5.9e-20 100.9 79 55.7
PGR044G2203 Punica granatum HOM05D007237 ORTHO05D008854 7.8e-20 100.5 83 51.8
THA.LOC104820127 Tarenaya hassleriana HOM05D007237 ORTHO05D008854 7.8e-20 100.5 63 74.6
unitig_8.g3625 Utricularia gibba HOM05D007237 ORTHO05D008854 7.8e-20 100.5 78 56.4
Lj3g0027771 Lotus japonicus HOM05D007237 ORTHO05D008854 1.0e-19 100.1 87 54.0
Aqoxy2G00108 Aquilegia oxysepala HOM05D007237 ORTHO05D008854 1.3e-19 99.8 81 50.6
FvH4_7g00620 Fragaria vesca HOM05D007237 ORTHO05D008854 1.3e-19 99.8 77 54.5
SGA_v2.0_scaffold4G02250 Striga asiatica HOM05D000288 ORTHO05D000173 1.3e-19 99.8 79 54.4
FAN01G1198 Fragaria x ananassa HOM05D005285 ORTHO05D006829 3.8e-19 98.2 77 53.2
Prupe.2G008300 Prunus persica HOM05D007237 ORTHO05D008854 3.8e-19 98.2 79 51.9
TWI09G0768 Tripterygium wilfordii HOM05D007237 ORTHO05D008854 3.8e-19 98.2 89 51.7
vmacro13649 Vaccinium macrocarpon HOM05D000102 ORTHO05D000138 3.8e-19 98.2 81 54.3
AUR62009369 Chenopodium quinoa HOM05D005285 ORTHO05D006829 5.0e-19 97.8 69 59.4
Medtr3g027590 Medicago truncatula HOM05D007237 ORTHO05D008854 5.0e-19 97.8 85 50.6
COL.COLO4_23903 Corchorus olitorius HOM05D005285 ORTHO05D006829 8.6e-19 97.1 71 59.2
Lalb_Chr03g0033911 Lupinus albus HOM05D007237 ORTHO05D008854 8.6e-19 97.1 91 52.7
ATR0605G218 Amborella trichopoda HOM05D007237 ORTHO05D008854 1.1e-18 96.7 88 46.6
Lalb_Chr20g0108101 Lupinus albus HOM05D007237 ORTHO05D008854 1.1e-18 96.7 84 47.6
Ah.12g061430 Amaranthus hybridus HOM05D000016 ORTHO05D000433 1.5e-18 96.3 85 50.6
RcHm_v2.0_Chr1g0314811 Rosa chinensis HOM05D007237 ORTHO05D008854 1.5e-18 96.3 81 53.1
TWI53G0305 Tripterygium wilfordii HOM05D007237 ORTHO05D008854 1.9e-18 95.9 79 53.2
Actinidia31685 Actinidia chinensis HOM05D007237 ORTHO05D008854 3.3e-18 95.1 83 51.8
CARHR161870 Cardamine hirsuta HOM05D007237 ORTHO05D008854 7.3e-18 94.0 60 61.7
Haze_03241 Corylus avellana HOM05D007237 ORTHO05D008854 7.3e-18 94.0 73 57.5
Phvul.005G037300 Phaseolus vulgaris HOM05D007237 ORTHO05D008854 9.5e-18 93.6 80 51.2
arahy.Tifrunner.gnm1.ann1.CQ9Q2Z Arachis hypogaea HOM05D007237 ORTHO05D008854 1.2e-17 93.2 81 51.9
arahy.Tifrunner.gnm1.ann1.PP9VDR Arachis hypogaea HOM05D007237 ORTHO05D008854 1.2e-17 93.2 81 51.9
CANSAT21G0694 Cannabis sativa HOM05D007237 ORTHO05D008854 1.2e-17 93.2 81 51.9
AL5G32700 Arabidopsis lyrata HOM05D007237 ORTHO05D008854 1.6e-17 92.8 60 60.0
Carub.0005s1847 Capsella rubella HOM05D007237 ORTHO05D008854 3.6e-17 91.7 60 60.0
Sed0015658 Sechium edule HOM05D007237 ORTHO05D008854 3.6e-17 91.7 81 48.1
BcaC02g09277 Brassica carinata HOM05D007237 ORTHO05D008854 4.7e-17 91.3 60 61.7
BcaC06g33382 Brassica carinata HOM05D007237 ORTHO05D008854 4.7e-17 91.3 60 60.0
A03p48720 Brassica napus HOM05D007237 ORTHO05D008854 4.7e-17 91.3 60 60.0
A04p07230 Brassica napus HOM05D007237 ORTHO05D008854 4.7e-17 91.3 60 61.7
C04p40790 Brassica napus HOM05D007237 ORTHO05D008854 4.7e-17 91.3 60 61.7
C07p46810 Brassica napus HOM05D007237 ORTHO05D008854 4.7e-17 91.3 60 60.0
BolC7t45198H Brassica oleracea HOM05D007237 ORTHO05D008854 4.7e-17 91.3 60 60.0
BraA03t13972Z Brassica rapa HOM05D007237 ORTHO05D008854 4.7e-17 91.3 60 60.0
Sp5g10150 Schrenkiella parvula HOM05D007237 ORTHO05D008854 4.7e-17 91.3 60 61.7
THA.LOC104825138 Tarenaya hassleriana HOM05D007237 ORTHO05D008854 4.7e-17 91.3 60 60.0
Aa31LG10G7220 Aethionema arabicum HOM05D007237 ORTHO05D008854 6.1e-17 90.9 60 61.7
Thhalv10010991m.g Eutrema salsugineum HOM05D007237 ORTHO05D008854 6.1e-17 90.9 60 60.0
Ah.12g052640 Amaranthus hybridus HOM05D000491 ORTHO05D008854 8.0e-17 90.5 69 53.6
PSO017G6688 Papaver somniferum HOM05D007237 ORTHO05D008854 8.0e-17 90.5 83 47.0
A09p45190 Brassica napus HOM05D007237 ORTHO05D008854 1.0e-16 90.1 60 58.3
BolC8t50357H Brassica oleracea HOM05D007237 ORTHO05D008854 1.0e-16 90.1 60 58.3
BraA09t39982Z Brassica rapa HOM05D007237 ORTHO05D008854 1.0e-16 90.1 60 58.3
Oeu039102.1 Olea europaea HOM05D005285 ORTHO05D006829 1.8e-16 89.4 87 49.4
Oeu039103.1 Olea europaea HOM05D005285 ORTHO05D008854 1.8e-16 89.4 87 49.4
arahy.Tifrunner.gnm1.ann1.1X74KR Arachis hypogaea HOM05D007237 ORTHO05D008854 2.3e-16 89.0 61 62.3
BcaNung06095 Brassica carinata HOM05D007237 ORTHO05D008854 5.2e-16 87.8 60 56.7
C08p27400 Brassica napus HOM05D007237 ORTHO05D008854 5.2e-16 87.8 60 56.7
CsaV3_7G031300 Cucumis sativus L. HOM05D007237 ORTHO05D008854 3.7e-14 81.6 78 44.9
ClCG09G004370 Citrullus lanatus HOM05D007237 ORTHO05D008854 4.9e-14 81.3 78 44.9
MELO3C023529.2 Cucumis melo HOM05D007237 ORTHO05D008854 8.3e-14 80.5 78 43.6
CDE10G0734 Ceratophyllum demersum HOM05D007237 ORTHO05D008854 7.0e-13 77.4 60 55.0
Sed0001876 Sechium edule HOM05D007237 ORTHO05D008854 1.5e-10 69.7 83 33.7
SHI04057 Sapria himalayana HOM05D007237 ORTHO05D008854 2.5e-10 68.9 80 37.5
Rhsim07G0053900 Rhododendron simsii HOM05D000102 ORTHO05D000138 1.4e-08 63.2 45 55.6


User provided reference genes

Program Settings