Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g29533 Brassica carinata HOM05D006091 ORTHO05D006421 2.7e-98 362.1 190 100.0
BolC5t34643H Brassica oleracea HOM05D006091 ORTHO05D006421 3.2e-51 205.7 118 96.6
A05p40780 Brassica napus HOM05D006091 ORTHO05D006421 5.3e-46 188.3 118 89.8
BraA05t22809Z Brassica rapa HOM05D006091 ORTHO05D006421 5.3e-46 188.3 118 89.8
C05p59890 Brassica napus HOM05D006091 ORTHO05D006421 1.9e-43 179.9 118 87.3
AL3G18700 Arabidopsis lyrata HOM05D006091 ORTHO05D006421 5.5e-43 178.3 118 83.1
Carub.0003s0694 Capsella rubella HOM05D006091 ORTHO05D006421 9.3e-43 177.6 118 84.7
Thhalv10019992m.g Eutrema salsugineum HOM05D006091 ORTHO05D006421 3.5e-42 175.6 118 83.1
Sp3g06320 Schrenkiella parvula HOM05D006091 ORTHO05D006421 5.1e-41 171.8 118 80.5
AT3G07400 Arabidopsis thaliana HOM05D006091 ORTHO05D006421 6.7e-41 171.4 118 79.7
Aa31LG5G17970 Aethionema arabicum HOM05D006091 ORTHO05D006421 5.3e-38 161.8 120 75.8
CARHR082040 Cardamine hirsuta HOM05D006091 ORTHO05D006421 1.2e-37 160.6 117 75.2
THA.LOC104802652 Tarenaya hassleriana HOM05D006091 ORTHO05D006421 4.2e-35 152.1 122 73.0
Nitab4.5_0000038g0010 Nicotiana tabacum HOM05D006091 ORTHO05D006421 6.3e-31 138.3 116 69.8
Nitab4.5_0009574g0010 Nicotiana tabacum HOM05D006091 ORTHO05D006421 8.2e-31 137.9 116 69.0
Thecc.01G213100 Theobroma cacao HOM05D006091 ORTHO05D006421 3.1e-30 136.0 121 59.5
COL.COLO4_04501 Corchorus olitorius HOM05D006091 ORTHO05D006421 4.1e-30 135.6 120 58.3
Manes.12G052100 Manihot esculenta HOM05D006091 ORTHO05D006421 4.1e-30 135.6 126 60.3
CAN.G99.2 Capsicum annuum HOM05D006091 ORTHO05D006421 1.5e-29 133.7 116 66.4
QL09p045696 Quercus lobata HOM05D006091 ORTHO05D006421 2.6e-29 132.9 135 58.5
Solyc09g056350.4 Solanum lycopersicum HOM05D006091 ORTHO05D006421 2.6e-29 132.9 113 68.1
Sopen09g020500 Solanum pennellii HOM05D006091 ORTHO05D006421 3.4e-29 132.5 113 67.3
Rhsim13G0051700 Rhododendron simsii HOM05D006091 ORTHO05D006421 2.9e-28 129.4 118 62.7
Peaxi162Scf00054g00172 Petunia axillaris HOM05D006091 ORTHO05D006421 3.8e-28 129.0 112 65.2
PGR083G0226 Punica granatum HOM05D006091 ORTHO05D006421 6.5e-28 128.3 123 62.6
Psat0s4060g0040 Pisum sativum HOM05D006091 ORTHO05D006421 1.1e-27 127.5 120 56.7
Gohir.D11G147900 Gossypium hirsutum HOM05D006091 ORTHO05D006421 3.5e-26 122.5 120 54.2
TWI75G0482 Tripterygium wilfordii HOM05D006091 ORTHO05D006421 3.5e-26 122.5 117 65.0
vmacro02807 Vaccinium macrocarpon HOM05D006091 ORTHO05D006421 3.5e-26 122.5 118 60.2
CANSAT01G2939 Cannabis sativa HOM05D006091 ORTHO05D006421 6.1e-26 121.7 121 58.7
CiPaw.14G042600 Carya illinoinensis HOM05D006091 ORTHO05D006421 1.0e-25 120.9 117 61.5
Eucgr.H00733 Eucalyptus grandis HOM05D006091 ORTHO05D006421 1.0e-25 120.9 116 61.2
Atru.chr6.1598 Acer truncatum HOM05D006091 ORTHO05D006421 1.8e-25 120.2 118 59.3
Gohir.A11G141600 Gossypium hirsutum HOM05D006091 ORTHO05D006421 2.3e-25 119.8 119 52.9
Potri.002G249400 Populus trichocarpa HOM05D006091 ORTHO05D006421 2.3e-25 119.8 120 60.0
Aqoxy2G03964 Aquilegia oxysepala HOM05D006091 ORTHO05D006421 6.7e-25 118.2 134 53.7
Ca_23191_v3 Cicer arietinum L. HOM05D006091 ORTHO05D006421 6.7e-25 118.2 117 56.4
Gorai.007G158500 Gossypium raimondii HOM05D006091 ORTHO05D006421 6.7e-25 118.2 119 53.8
PSO017G2440 Papaver somniferum HOM05D006091 ORTHO05D006421 6.7e-25 118.2 114 61.4
Haze_03313 Corylus avellana HOM05D006091 ORTHO05D006421 1.5e-24 117.1 136 53.7
Oeu003643.1 Olea europaea HOM05D006091 ORTHO05D006421 1.5e-24 117.1 109 63.3
Dinv12805 Davidia involucrata HOM05D006091 ORTHO05D006421 1.9e-24 116.7 117 59.8
Migut.N00655 Erythranthe guttata HOM05D006091 ORTHO05D006421 3.3e-24 115.9 112 57.1
Actinidia23366 Actinidia chinensis HOM05D006091 ORTHO05D006421 5.7e-24 115.2 118 60.2
CSS0012975 Camellia sinensis var. sinensis HOM05D006091 ORTHO05D006421 5.7e-24 115.2 115 60.0
Glyma.03G089000 Glycine max HOM05D006091 ORTHO05D006421 9.7e-24 114.4 166 43.4
PSO675G5723 Papaver somniferum HOM05D006091 ORTHO05D006421 1.3e-23 114.0 120 56.7
MSTRG.17976 Avicennia marina HOM05D006091 ORTHO05D006421 1.6e-23 113.6 123 50.4
Nn1g08059 Nelumbo nucifera HOM05D006091 ORTHO05D006421 1.6e-23 113.6 166 44.0
Gohir.D07G095400 Gossypium hirsutum HOM05D006091 ORTHO05D006421 2.2e-23 113.2 120 54.2
Gorai.001G102700 Gossypium raimondii HOM05D006091 ORTHO05D006421 2.2e-23 113.2 120 54.2
RcHm_v2.0_Chr6g0283291 Rosa chinensis HOM05D006091 ORTHO05D006421 2.2e-23 113.2 116 58.6
TAR362G0288 Trochodendron aralioides HOM05D006091 ORTHO05D006421 8.2e-23 111.3 117 58.1
Lj3g0004892 Lotus japonicus HOM05D006091 ORTHO05D006421 1.1e-22 110.9 166 44.6
DCAR_004762 Daucus carota HOM05D006091 ORTHO05D006421 1.8e-22 110.2 117 49.6
Gohir.A07G090700 Gossypium hirsutum HOM05D006091 ORTHO05D006421 1.8e-22 110.2 120 53.3
Glyma.16G084200 Glycine max HOM05D006091 ORTHO05D006421 2.4e-22 109.8 166 42.2
MD05G1163900 Malus domestica HOM05D006091 ORTHO05D006421 3.1e-22 109.4 114 56.1
FvH4_2g17990 Fragaria vesca HOM05D006091 ORTHO05D006421 6.9e-22 108.2 115 54.8
FAN24G1597 Fragaria x ananassa HOM05D006091 ORTHO05D006421 6.9e-22 108.2 115 54.8
SGA_v2.0_scaffold77G25288 Striga asiatica HOM05D006091 ORTHO05D006421 9.0e-22 107.8 110 59.1
arahy.Tifrunner.gnm1.ann1.ZLM6RM Arachis hypogaea HOM05D006091 ORTHO05D006421 2.6e-21 106.3 120 50.8
Lj2C1118G19 Lonicera japonica HOM05D006091 ORTHO05D006421 7.7e-21 104.8 113 54.0
ClCG09G008430 Citrullus lanatus HOM05D006091 ORTHO05D006421 1.0e-20 104.4 113 54.9
FAN27G2037 Fragaria x ananassa HOM05D006091 ORTHO05D006421 1.3e-20 104.0 114 54.4
Hma1.2p1_0405F.1_g145840 Hydrangea macrophylla HOM05D006091 ORTHO05D006421 1.3e-20 104.0 115 53.9
Hma1.2p1_2126F.1_g314577 Hydrangea macrophylla HOM05D006091 ORTHO05D006421 1.3e-20 104.0 115 53.9
Hma1.2p1_0405F.1_g145830 Hydrangea macrophylla HOM05D006091 ORTHO05D006421 1.7e-20 103.6 114 53.5
Hma1.2p1_2126F.1_g314575 Hydrangea macrophylla HOM05D006091 ORTHO05D006421 1.7e-20 103.6 114 53.5
MELO3C021115.2 Cucumis melo HOM05D006091 ORTHO05D006421 2.2e-20 103.2 113 54.9
CsaV3_7G026640 Cucumis sativus L. HOM05D006091 ORTHO05D006421 2.2e-20 103.2 113 54.9
ECA236G3389 Erigeron canadensis HOM05D006091 ORTHO05D006421 2.2e-20 103.2 137 51.1
FAN15G2626 Fragaria x ananassa HOM05D006091 ORTHO05D006421 3.8e-20 102.4 114 56.1
Medtr8g011610 Medicago truncatula HOM05D006091 ORTHO05D006421 5.0e-20 102.1 123 48.0
Lalb_Chr13g0291021 Lupinus albus HOM05D006091 ORTHO05D006421 6.5e-20 101.7 113 52.2
MD10G1153600 Malus domestica HOM05D006091 ORTHO05D006421 6.5e-20 101.7 114 52.6
Ciclev10030603m.g Citrus clementina HOM05D006091 ORTHO05D006421 1.4e-19 100.5 115 54.8
Ah.08g218720 Amaranthus hybridus HOM05D006091 ORTHO05D006421 7.2e-19 98.2 116 52.6
HanXRQChr04g0107951 Helianthus annuus HOM05D006091 ORTHO05D006421 7.2e-19 98.2 113 55.8
Lsat_1_v5_gn_8_88561 Lactuca sativa HOM05D006091 ORTHO05D006421 7.2e-19 98.2 113 54.0
AUR62022134 Chenopodium quinoa HOM05D006091 ORTHO05D006421 9.4e-19 97.8 115 53.0
Hund18485 Selenicereus undatus HOM05D006091 ORTHO05D006421 6.1e-18 95.1 110 50.9
Cc01_g16310 Coffea canephora HOM05D006091 ORTHO05D006421 1.4e-17 94.0 111 50.5
AUR62001194 Chenopodium quinoa HOM05D006091 ORTHO05D006421 1.8e-17 93.6 117 52.1
Sed0015233 Sechium edule HOM05D006091 ORTHO05D006421 2.3e-17 93.2 112 50.9
unitig_699.g19751 Utricularia gibba HOM05D006091 ORTHO05D006421 1.1e-16 90.9 109 49.5
SEGI_05193 Sequoiadendron giganteum HOM05D006091 ORTHO05D006421 3.3e-16 89.4 116 40.5
arahy.Tifrunner.gnm1.ann1.23KP9R Arachis hypogaea HOM05D006091 ORTHO05D006421 4.3e-16 89.0 120 45.0
SMO117G0101 Selaginella moellendorffii HOM05D006091 ORTHO05D006421 1.8e-14 83.6 124 43.5
CDE05G1549 Ceratophyllum demersum HOM05D006091 ORTHO05D006421 2.0e-13 80.1 64 54.7
GSVIVG01005280001 Vitis vinifera HOM05D006091 ORTHO05D006421 4.5e-13 79.0 58 55.2
CiPaw.13G053400 Carya illinoinensis HOM05D006091 ORTHO05D006421 7.7e-13 78.2 54 61.1
Os02g0481700 Oryza sativa ssp. japonica HOM05D006091 ORTHO05D006421 2.2e-12 76.6 117 46.2
Mapoly0057s0040 Marchantia polymorpha HOM05D006091 ORTHO05D006421 2.9e-12 76.3 135 43.0
ATR0609G072 Amborella trichopoda HOM05D006091 ORTHO05D006421 5.0e-12 75.5 123 42.3
SEGI_39275 Sequoiadendron giganteum HOM05D006091 ORTHO05D006421 5.0e-12 75.5 110 44.5
Zm00001eb202960 Zea mays HOM05D006091 ORTHO05D006421 1.4e-11 73.9 106 49.1
HPP92_009934 Vanilla planifolia HOM05D006091 ORTHO05D006421 3.2e-11 72.8 110 48.2
Prupe.8G192400 Prunus persica HOM05D006091 ORTHO05D006421 7.9e-10 68.2 53 54.7
Pp3c23_8470 Physcomitrium patens HOM05D006091 ORTHO05D006421 1.0e-09 67.8 121 32.2
Sc05g0001800 Simmondsia chinensis HOM05D006091 ORTHO05D006421 5.1e-09 65.5 49 55.1


User provided reference genes

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