Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g29522 Brassica carinata HOM05D007483 ORTHO05D009133 5.5e-95 350.9 171 100.0
A05p39660 Brassica napus HOM05D007483 ORTHO05D009133 9.1e-82 307.0 171 88.3
BraA05t22748Z Brassica rapa HOM05D007483 ORTHO05D009133 4.5e-81 304.7 171 87.7
BcaC05g29659 Brassica carinata HOM05D007483 ORTHO05D009133 5.7e-76 287.7 171 84.2
C05p58700 Brassica napus HOM05D007483 ORTHO05D009133 5.4e-74 281.2 171 83.6
BolC5t34519H Brassica oleracea HOM05D007483 ORTHO05D009133 7.0e-74 280.8 171 83.6
Sp3g07690 Schrenkiella parvula HOM05D007483 ORTHO05D009133 8.6e-72 273.9 171 79.5
AT3G09310 Arabidopsis thaliana HOM05D007483 ORTHO05D009133 9.8e-68 260.4 171 74.3
Thhalv10021669m.g Eutrema salsugineum HOM05D007483 ORTHO05D009133 2.2e-67 259.2 171 76.6
AL3G20460 Arabidopsis lyrata HOM05D007483 ORTHO05D009133 1.3e-64 250.0 166 74.1
Carub.0003s0842 Capsella rubella HOM05D007483 ORTHO05D009133 8.6e-64 247.3 172 75.0
CARHR083670 Cardamine hirsuta HOM05D007483 ORTHO05D009133 3.2e-58 228.8 162 72.8
Aa31LG3G1800 Aethionema arabicum HOM05D007483 ORTHO05D009133 7.8e-57 224.2 155 71.6
THA.LOC104816252 Tarenaya hassleriana HOM05D007483 ORTHO05D009133 1.6e-46 189.9 174 59.8
Lj3g0014039 Lotus japonicus HOM05D007483 ORTHO05D009133 4.6e-41 171.8 145 59.3
Gohir.D12G223900 Gossypium hirsutum HOM05D007483 ORTHO05D009133 3.9e-40 168.7 153 54.2
Lalb_Chr07g0193781 Lupinus albus HOM05D007483 ORTHO05D009133 5.1e-40 168.3 101 75.2
Gohir.A12G221500 Gossypium hirsutum HOM05D007483 ORTHO05D009133 6.6e-40 167.9 138 56.5
VMungo0331G1516 Vigna mungo HOM05D007483 ORTHO05D009133 6.6e-40 167.9 138 58.7
Phvul.010G011100 Phaseolus vulgaris HOM05D007483 ORTHO05D009133 1.5e-39 166.8 115 68.7
Actinidia13151 Actinidia chinensis HOM05D007483 ORTHO05D009133 1.9e-39 166.4 126 61.9
FAN09G2152 Fragaria x ananassa HOM05D007483 ORTHO05D009133 5.6e-39 164.9 147 57.1
FAN14G1457 Fragaria x ananassa HOM05D007483 ORTHO05D009133 7.3e-39 164.5 92 79.3
RcHm_v2.0_Chr3g0466381 Rosa chinensis HOM05D007483 ORTHO05D009133 9.6e-39 164.1 143 56.6
Thecc.05G037700 Theobroma cacao HOM05D007483 ORTHO05D009133 1.3e-38 163.7 97 74.2
Ca_05061_v3 Cicer arietinum L. HOM05D007483 ORTHO05D009133 2.1e-38 162.9 142 59.9
Medtr4g021820 Medicago truncatula HOM05D007483 ORTHO05D009133 2.1e-38 162.9 149 55.7
arahy.Tifrunner.gnm1.ann1.29J2UD Arachis hypogaea HOM05D007483 ORTHO05D009133 2.8e-38 162.5 140 57.1
Duzib093G2195 Durio zibethinus HOM05D007483 ORTHO05D009133 2.8e-38 162.5 98 73.5
Glyma.03G066000 Glycine max HOM05D007483 ORTHO05D009133 3.6e-38 162.2 139 56.8
QL07p048670 Quercus lobata HOM05D007483 ORTHO05D009133 3.6e-38 162.2 136 56.6
FAN02G3616 Fragaria x ananassa HOM05D007483 ORTHO05D009133 6.2e-38 161.4 91 79.1
ClCG04G008120 Citrullus lanatus HOM05D007483 ORTHO05D009133 1.4e-37 160.2 108 67.6
GSVIVG01034153001 Vitis vinifera HOM05D007483 ORTHO05D009133 1.4e-37 160.2 142 61.3
FAN05G4215 Fragaria x ananassa HOM05D007483 ORTHO05D009133 1.8e-37 159.8 92 77.2
Nn2g13380 Nelumbo nucifera HOM05D007483 ORTHO05D009133 4.0e-37 158.7 123 61.0
Eucgr.A01276 Eucalyptus grandis HOM05D007483 ORTHO05D009133 6.9e-37 157.9 131 64.9
MSTRG.19078 Avicennia marina HOM05D007483 ORTHO05D009133 9.0e-37 157.5 159 52.2
CiPaw.09G194400 Carya illinoinensis HOM05D007483 ORTHO05D009133 9.0e-37 157.5 154 54.5
AUR62025813 Chenopodium quinoa HOM05D007483 ORTHO05D009133 9.0e-37 157.5 97 71.1
arahy.Tifrunner.gnm1.ann1.A9IP9X Arachis hypogaea HOM05D007483 ORTHO05D009133 1.5e-36 156.8 149 53.7
Aqoxy1G00916 Aquilegia oxysepala HOM05D007483 ORTHO05D009133 2.0e-36 156.4 87 78.2
Manes.08G088800 Manihot esculenta HOM05D007483 ORTHO05D009133 5.8e-36 154.8 162 49.4
TPR.G7337 Trifolium pratense HOM05D007483 ORTHO05D009133 5.8e-36 154.8 94 75.5
Sopen10g034250 Solanum pennellii HOM05D007483 ORTHO05D009133 9.9e-36 154.1 85 76.5
Sed0013393 Sechium edule HOM05D007483 ORTHO05D009133 1.7e-35 153.3 126 58.7
SEGI_13406 Sequoiadendron giganteum HOM05D007483 ORTHO05D009133 1.7e-35 153.3 86 77.9
CAN.G324.11 Capsicum annuum HOM05D007483 ORTHO05D009133 2.2e-35 152.9 123 59.3
Migut.J00322 Erythranthe guttata HOM05D007483 ORTHO05D009133 2.9e-35 152.5 130 57.7
Nitab4.5_0000216g0380 Nicotiana tabacum HOM05D007483 ORTHO05D009133 3.8e-35 152.1 79 81.0
TWI74G0092 Tripterygium wilfordii HOM05D007483 ORTHO05D009133 3.8e-35 152.1 152 53.9
Zm00001eb164460 Zea mays HOM05D007483 ORTHO05D009133 3.8e-35 152.1 88 73.9
PSO063G2390 Papaver somniferum HOM05D007483 ORTHO05D009133 4.9e-35 151.8 81 81.5
Sabra16G0100900 Salix brachista HOM05D007483 ORTHO05D009133 4.9e-35 151.8 98 70.4
Prupe.6G257100 Prunus persica HOM05D007483 ORTHO05D009133 6.4e-35 151.4 156 50.0
Cfa016672 Carpinus fangiana HOM05D007483 ORTHO05D009133 8.4e-35 151.0 147 52.4
EL10Ac6g14169 Beta vulgaris HOM05D007483 ORTHO05D009133 1.1e-34 150.6 126 58.7
MD12G1143600 Malus domestica HOM05D007483 ORTHO05D009133 1.1e-34 150.6 96 65.6
Potri.016G099700 Populus trichocarpa HOM05D007483 ORTHO05D009133 1.4e-34 150.2 85 80.0
Os11g0706100 Oryza sativa ssp. japonica HOM05D007483 ORTHO05D009133 1.9e-34 149.8 85 74.1
Dinv35587 Davidia involucrata HOM05D007483 ORTHO05D009133 2.4e-34 149.4 159 50.3
Ah.06g191870 Amaranthus hybridus HOM05D007483 ORTHO05D009133 3.2e-34 149.1 90 74.4
CANSAT11G2488 Cannabis sativa HOM05D007483 ORTHO05D009133 3.2e-34 149.1 119 57.1
Lsat_1_v5_gn_9_30381 Lactuca sativa HOM05D007483 ORTHO05D009133 9.3e-34 147.5 80 77.5
CBR_g19672 Chara braunii HOM05D007483 ORTHO05D009133 2.1e-33 146.4 84 75.0
HanXRQChr16g0497811 Helianthus annuus HOM05D007483 ORTHO05D009133 2.1e-33 146.4 129 55.0
HPP92_019244 Vanilla planifolia HOM05D007483 ORTHO05D009133 3.5e-33 145.6 85 72.9
ECA247G0729 Erigeron canadensis HOM05D001424 ORTHO05D009133 1.0e-32 144.1 106 61.3
unitig_744.g24653 Utricularia gibba HOM05D000968 ORTHO05D003096 1.0e-32 144.1 86 69.8
PSO339G1657 Papaver somniferum HOM05D007483 ORTHO05D009133 1.7e-32 143.3 136 56.6
Hund10634 Selenicereus undatus HOM05D007483 ORTHO05D009133 1.7e-32 143.3 109 62.4
SGA_v2.0_scaffold126G33776 Striga asiatica HOM05D007483 ORTHO05D009133 3.0e-32 142.5 93 69.9
Cfa017361 Carpinus fangiana HOM05D007483 ORTHO05D009133 3.9e-32 142.1 94 68.1
Cc06_g02530 Coffea canephora HOM05D007483 ORTHO05D009133 5.1e-32 141.7 80 76.2
Mapoly0019s0017 Marchantia polymorpha HOM05D007483 ORTHO05D009133 1.1e-31 140.6 119 55.5
AagrBONN_evm.TU.Sc2ySwM_228.2371 Anthoceros agrestis HOM05D007483 ORTHO05D009133 1.9e-31 139.8 105 62.9
Pp3c15_21390 Physcomitrium patens HOM05D007483 ORTHO05D009133 2.1e-30 136.3 138 50.0
Solyc10g084810.3 Solanum lycopersicum HOM05D007483 ORTHO05D009133 3.6e-30 135.6 66 83.3
DCAR_028750 Daucus carota HOM05D007483 ORTHO05D009133 4.8e-30 135.2 67 82.1
Oeu007795.1 Olea europaea HOM05D007483 ORTHO05D009133 6.2e-30 134.8 66 84.8
TAR636G3143 Trochodendron aralioides HOM05D007483 ORTHO05D009133 6.2e-30 134.8 129 54.3
Cpa.g.sc169.23 Carica papaya HOM05D007483 ORTHO05D009133 5.3e-29 131.7 90 68.9
CsaV3_4G025070 Cucumis sativus L. HOM05D007483 ORTHO05D009133 5.3e-29 131.7 87 69.0
PGSC0003DMG400011065 Solanum tuberosum HOM05D007483 ORTHO05D009133 3.4e-28 129.0 73 75.3
ATR0559G251 Amborella trichopoda HOM05D007483 ORTHO05D009133 9.9e-28 127.5 72 80.6
FvH4_6g13510 Fragaria vesca HOM05D007483 ORTHO05D009133 2.2e-27 126.3 60 88.3
Rhsim04G0158000 Rhododendron simsii HOM05D007483 ORTHO05D009133 2.2e-27 126.3 71 77.5
MBI05_g28376_MAGBIO Magnolia biondii HOM05D007483 ORTHO05D009133 2.9e-27 125.9 71 76.1
Os02g0260400 Oryza sativa ssp. japonica HOM05D007483 ORTHO05D009133 3.8e-27 125.6 109 56.9
Sabra13G0104100 Salix brachista HOM05D007483 ORTHO05D009133 6.4e-27 124.8 63 85.7
Nitab4.5_0000202g0060 Nicotiana tabacum HOM05D007483 ORTHO05D009133 2.4e-26 122.9 66 78.8
Lj2A93G81 Lonicera japonica HOM05D007483 ORTHO05D009133 4.2e-26 122.1 72 80.6
Ciclev10012381m.g Citrus clementina HOM05D007483 ORTHO05D009133 2.7e-25 119.4 172 42.4
MELO3C033192.2 Cucumis melo HOM05D007483 ORTHO05D009133 3.0e-24 115.9 74 70.3
Cre17.g720183 Chlamydomonas reinhardtii HOM05D007483 ORTHO05D009133 1.1e-23 114.0 76 59.2
Peaxi162Scf00094g01112 Petunia axillaris HOM05D007483 ORTHO05D009133 4.0e-21 105.5 68 69.1
SMO165G0096 Selaginella moellendorffii HOM05D007483 ORTHO05D009133 4.0e-21 105.5 67 67.2
PRCOL_00002574 Prasinoderma coloniale HOM05D007483 ORTHO05D009133 1.0e-19 100.9 81 59.3
MCO07G608 Micromonas commoda HOM05D007483 ORTHO05D009133 1.9e-18 96.7 63 58.7
Psat2g094360 Pisum sativum HOM05D007483 ORTHO05D009133 3.2e-18 95.9 64 68.8
CBR_g19673 Chara braunii HOM05D007483 ORTHO05D009133 6.7e-08 61.6 36 75.0


User provided reference genes

Program Settings