Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g29521 Brassica carinata HOM05D005845 ORTHO05D007067 1.4e-60 236.1 118 100.0
BraA05t22747Z Brassica rapa HOM05D005845 ORTHO05D007067 7.0e-57 223.8 118 96.6
A05p39650 Brassica napus HOM05D005845 ORTHO05D007067 1.3e-55 219.5 118 94.9
BcaC05g29660 Brassica carinata HOM05D005845 ORTHO05D007067 2.5e-54 215.3 118 94.1
C05p58690 Brassica napus HOM05D005845 ORTHO05D007067 2.5e-54 215.3 118 94.1
BolC5t34518H Brassica oleracea HOM05D005845 ORTHO05D007067 2.5e-54 215.3 118 94.1
AL3G20470 Arabidopsis lyrata HOM05D005845 ORTHO05D007067 9.8e-51 203.4 118 88.1
Sp3g07700 Schrenkiella parvula HOM05D005845 ORTHO05D007067 4.1e-49 198.0 118 87.3
CARHR083690 Cardamine hirsuta HOM05D005845 ORTHO05D007067 2.5e-46 188.7 119 84.0
Carub.0003s0843 Capsella rubella HOM05D005845 ORTHO05D007067 2.4e-41 172.2 115 77.4
Aa31LG3G1810 Aethionema arabicum HOM05D005845 ORTHO05D007067 3.0e-39 165.2 118 72.0
Thhalv10015070m.g Eutrema salsugineum HOM05D005845 ORTHO05D007067 1.1e-36 156.8 115 74.8
THA.LOC104816255 Tarenaya hassleriana HOM05D005845 ORTHO05D007067 1.1e-36 156.8 118 73.7
CARHR211240 Cardamine hirsuta HOM05D005845 ORTHO05D007067 3.4e-35 151.8 114 70.2
AT5G02120 Arabidopsis thaliana HOM05D005845 ORTHO05D007067 2.9e-34 148.7 114 69.3
Sp6g40320 Schrenkiella parvula HOM05D005845 ORTHO05D007067 2.9e-34 148.7 113 69.0
AL6G11350 Arabidopsis lyrata HOM05D005845 ORTHO05D007067 4.9e-34 147.9 114 69.3
BcaB01g06068 Brassica carinata HOM05D005845 ORTHO05D007067 1.1e-33 146.7 113 67.3
C03p00800 Brassica napus HOM05D005845 ORTHO05D007067 1.1e-33 146.7 113 67.3
BolC3t12643H Brassica oleracea HOM05D005845 ORTHO05D007067 1.1e-33 146.7 113 67.3
A03p00540 Brassica napus HOM05D005845 ORTHO05D007067 5.4e-33 144.4 114 68.4
BraA03t09444Z Brassica rapa HOM05D005845 ORTHO05D007067 5.4e-33 144.4 114 68.4
Carub.0006s0096 Capsella rubella HOM05D005845 ORTHO05D007067 2.1e-32 142.5 112 67.0
BcaB01g06213 Brassica carinata HOM05D005845 ORTHO05D007067 7.8e-32 140.6 114 66.7
TWI77G0787 Tripterygium wilfordii HOM05D005845 ORTHO05D007067 1.3e-31 139.8 121 65.3
RcHm_v2.0_Chr3g0466071 Rosa chinensis HOM05D005845 ORTHO05D007067 5.1e-31 137.9 126 65.1
Eucgr.K03081 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.9e-30 136.0 117 64.1
Eucgr.K03092 Eucalyptus grandis HOM05D005845 ORTHO05D007067 4.3e-30 134.8 122 63.1
Atru.chr8.2014 Acer truncatum HOM05D005320 ORTHO05D007922 7.3e-30 134.0 119 62.2
AUR62018118 Chenopodium quinoa HOM05D005845 ORTHO05D007067 9.6e-30 133.7 113 62.8
AUR62034449 Chenopodium quinoa HOM05D005845 ORTHO05D007067 1.2e-29 133.3 81 79.0
DCAR_028759 Daucus carota HOM05D005845 ORTHO05D007067 1.2e-29 133.3 121 59.5
FvH4_6g13240 Fragaria vesca HOM05D005845 ORTHO05D007067 1.2e-29 133.3 125 62.4
FAN14G4222 Fragaria x ananassa HOM05D005845 ORTHO05D007067 1.2e-29 133.3 125 62.4
Duzib106G0947 Durio zibethinus HOM05D005845 ORTHO05D007067 1.6e-29 132.9 114 66.7
COL.COLO4_14759 Corchorus olitorius HOM05D005845 ORTHO05D007067 2.1e-29 132.5 114 63.2
FAN02G1947 Fragaria x ananassa HOM05D005845 ORTHO05D007067 2.1e-29 132.5 124 62.1
Nn2g13425 Nelumbo nucifera HOM05D005845 ORTHO05D007067 2.1e-29 132.5 118 65.3
TWI74G0153 Tripterygium wilfordii HOM05D005845 ORTHO05D007067 2.1e-29 132.5 119 65.5
TAR633G1228 Trochodendron aralioides HOM05D005845 ORTHO05D007067 2.1e-29 132.5 119 63.0
EL10Ac2g03022 Beta vulgaris HOM05D005845 ORTHO05D007067 3.6e-29 131.7 109 66.1
CSS0047206 Camellia sinensis var. sinensis HOM05D005845 ORTHO05D007067 3.6e-29 131.7 123 61.8
Gorai.009G405900 Gossypium raimondii HOM05D005845 ORTHO05D007067 3.6e-29 131.7 118 66.1
MD12G1145500 Malus domestica HOM05D005845 ORTHO05D007067 4.7e-29 131.3 117 62.4
Gohir.D07G011900 Gossypium hirsutum HOM05D005845 ORTHO05D007067 6.2e-29 131.0 118 64.4
Gorai.001G012600 Gossypium raimondii HOM05D005845 ORTHO05D007067 8.1e-29 130.6 118 64.4
Thecc.05G035600 Theobroma cacao HOM05D005845 ORTHO05D007067 8.1e-29 130.6 114 63.2
Gohir.A07G012100 Gossypium hirsutum HOM05D005845 ORTHO05D007067 1.4e-28 129.8 118 64.4
MBI05_g35632_MAGBIO Magnolia biondii HOM05D005845 ORTHO05D007067 1.4e-28 129.8 118 58.5
CiPaw.10G147000 Carya illinoinensis HOM05D005845 ORTHO05D007067 1.8e-28 129.4 116 61.2
Cc06_g02340 Coffea canephora HOM05D005845 ORTHO05D007067 1.8e-28 129.4 123 59.3
Hma1.2p1_0936F.1_g238990 Hydrangea macrophylla HOM05D005845 ORTHO05D007067 1.8e-28 129.4 114 62.3
PSO513G0176 Papaver somniferum HOM05D005845 ORTHO05D007067 1.8e-28 129.4 80 77.5
CANSAT35G1952 Cannabis sativa HOM05D005845 ORTHO05D007067 2.4e-28 129.0 73 86.3
ClCG10G021330 Citrullus lanatus HOM05D005845 ORTHO05D007067 2.4e-28 129.0 121 62.0
MD04G1132800 Malus domestica HOM05D005845 ORTHO05D007067 2.4e-28 129.0 118 59.3
Prupe.6G259200 Prunus persica HOM05D005845 ORTHO05D007067 2.4e-28 129.0 121 59.5
TAR633G1058 Trochodendron aralioides HOM05D005845 ORTHO05D007067 3.1e-28 128.6 112 65.2
Sc01g0004490 Simmondsia chinensis HOM05D005845 ORTHO05D007067 4.0e-28 128.3 80 78.8
Rhsim05G0194900 Rhododendron simsii HOM05D005845 ORTHO05D007067 5.2e-28 127.9 118 59.3
GSVIVG01034129001 Vitis vinifera HOM05D005845 ORTHO05D007067 5.2e-28 127.9 115 60.9
Gohir.D04G102600 Gossypium hirsutum HOM05D005845 ORTHO05D007067 6.9e-28 127.5 118 64.4
ECA233G0482 Erigeron canadensis HOM05D005845 ORTHO05D007067 8.9e-28 127.1 111 61.3
Hund14261 Selenicereus undatus HOM05D006267 ORTHO05D007490 8.9e-28 127.1 73 82.2
vmacro20178 Vaccinium macrocarpon HOM05D005845 ORTHO05D007067 8.9e-28 127.1 118 61.0
Aqoxy1G00879 Aquilegia oxysepala HOM05D005845 ORTHO05D007067 1.2e-27 126.7 79 78.5
Manes.09G092274 Manihot esculenta HOM05D005845 ORTHO05D007067 1.5e-27 126.3 113 61.9
Ciclev10013078m.g Citrus clementina HOM05D005845 ORTHO05D007067 2.6e-27 125.6 120 57.5
Haze_20829 Corylus avellana HOM05D005320 ORTHO05D007922 2.6e-27 125.6 124 62.9
Gohir.A04G065200 Gossypium hirsutum HOM05D005845 ORTHO05D007067 2.6e-27 125.6 121 63.6
HanXRQChr02g0050481 Helianthus annuus HOM05D005845 ORTHO05D007067 2.6e-27 125.6 111 62.2
Potri.006G088200 Populus trichocarpa HOM05D005845 ORTHO05D007067 2.6e-27 125.6 117 59.0
PSO339G6396 Papaver somniferum HOM05D005845 ORTHO05D007067 3.4e-27 125.2 118 59.3
Psat3g137040 Pisum sativum HOM05D005845 ORTHO05D007067 3.4e-27 125.2 119 58.8
Glyma.07G135300 Glycine max HOM05D005845 ORTHO05D007067 4.4e-27 124.8 121 58.7
Lj3A964T57 Lonicera japonica HOM05D005845 ORTHO05D007067 5.8e-27 124.4 120 59.2
QL07p030115 Quercus lobata HOM05D005845 ORTHO05D007067 9.9e-27 123.6 117 55.6
QL07p030897 Quercus lobata HOM05D005845 ORTHO05D007067 9.9e-27 123.6 117 55.6
Cpa.g.sc3458.2 Carica papaya HOM05D005845 ORTHO05D007067 1.3e-26 123.2 117 60.7
CsaV3_3G034730 Cucumis sativus L. HOM05D005845 ORTHO05D007067 2.2e-26 122.5 121 59.5
VMungo1383G2075 Vigna mungo HOM05D005845 ORTHO05D007067 2.2e-26 122.5 79 75.9
FAN05G4617 Fragaria x ananassa HOM05D005845 ORTHO05D007067 2.9e-26 122.1 125 59.2
Nitab4.5_0003394g0030 Nicotiana tabacum HOM05D005845 ORTHO05D007067 2.9e-26 122.1 120 60.8
Sed0011119 Sechium edule HOM05D005845 ORTHO05D007067 3.8e-26 121.7 127 59.8
Eucgr.G01508 Eucalyptus grandis HOM05D005845 ORTHO05D007067 4.9e-26 121.3 135 54.8
Nitab4.5_0000705g0030 Nicotiana tabacum HOM05D005845 ORTHO05D007067 6.4e-26 120.9 120 60.0
Os05g0292800 Oryza sativa ssp. japonica HOM05D005845 ORTHO05D007067 6.4e-26 120.9 76 78.9
Zm00001eb299980 Zea mays HOM05D005845 ORTHO05D007067 6.4e-26 120.9 77 77.9
Phvul.008G118000 Phaseolus vulgaris HOM05D005845 ORTHO05D007067 8.4e-26 120.6 79 73.4
Medtr7g062970 Medicago truncatula HOM05D005845 ORTHO05D007067 1.1e-25 120.2 122 55.7
Ca_07339_v3 Cicer arietinum L. HOM05D005845 ORTHO05D007067 1.9e-25 119.4 119 57.1
Lalb_Chr03g0042411 Lupinus albus HOM05D005845 ORTHO05D007067 1.9e-25 119.4 80 73.8
Peaxi162Scf00527g00733 Petunia axillaris HOM05D005845 ORTHO05D007067 1.9e-25 119.4 120 60.0
ATR0559G337 Amborella trichopoda HOM05D005845 ORTHO05D007067 3.2e-25 118.6 73 83.6
arahy.Tifrunner.gnm1.ann1.CX8U58 Arachis hypogaea HOM05D005845 ORTHO05D007067 3.2e-25 118.6 118 56.8
Lsat_1_v5_gn_6_22520 Lactuca sativa HOM05D005845 ORTHO05D007067 3.2e-25 118.6 111 57.7
PGR004G0892 Punica granatum HOM05D005845 ORTHO05D007067 3.2e-25 118.6 121 52.1
Rhsim04G0158900 Rhododendron simsii HOM05D005845 ORTHO05D007067 3.2e-25 118.6 139 51.1
SalBow1G4544 Salvia bowleyana HOM05D005845 ORTHO05D007067 3.2e-25 118.6 79 73.4
SalBow7G2664 Salvia bowleyana HOM05D005845 ORTHO05D007067 3.2e-25 118.6 79 73.4
SEGI_39626 Sequoiadendron giganteum HOM05D005845 ORTHO05D007067 5.4e-25 117.9 78 74.4
arahy.Tifrunner.gnm1.ann1.1Q4DHH Arachis hypogaea HOM05D005845 ORTHO05D007067 9.3e-25 117.1 80 72.5
Eucgr.K03089 Eucalyptus grandis HOM05D005845 ORTHO05D007067 9.3e-25 117.1 108 60.2
arahy.Tifrunner.gnm1.ann1.D19TT3 Arachis hypogaea HOM05D005845 ORTHO05D007067 1.6e-24 116.3 80 70.0
Lj1g0012131 Lotus japonicus HOM05D005845 ORTHO05D007067 2.1e-24 115.9 71 78.9
Solyc09g011010.3 Solanum lycopersicum HOM05D005845 ORTHO05D007067 2.7e-24 115.5 111 58.6
Sopen09g005730 Solanum pennellii HOM05D005845 ORTHO05D007067 2.7e-24 115.5 111 58.6
PGSC0003DMG400008901 Solanum tuberosum HOM05D005845 ORTHO05D007067 6.0e-24 114.4 111 57.7
Sabra06G0067200 Salix brachista HOM05D000102 ORTHO05D004225 1.3e-23 113.2 110 55.5
Os12g0480100 Oryza sativa ssp. japonica HOM05D005845 ORTHO05D007067 1.7e-23 112.8 72 73.6
Migut.L01960 Erythranthe guttata HOM05D005845 ORTHO05D007067 2.3e-23 112.5 71 76.1
arahy.Tifrunner.gnm1.ann1.1BNP0N Arachis hypogaea HOM05D005845 ORTHO05D007067 3.0e-23 112.1 120 55.0
CAN.G597.2 Capsicum annuum HOM05D005845 ORTHO05D007067 1.9e-22 109.4 113 55.8
Zm00001eb090340 Zea mays HOM05D005845 ORTHO05D007067 2.1e-21 105.9 64 81.2
Lalb_Chr01g0022631 Lupinus albus HOM05D005845 ORTHO05D007067 3.6e-21 105.1 80 66.2
CDE06G2558 Ceratophyllum demersum HOM05D000816 ORTHO05D009154 6.2e-21 104.4 64 81.2
Eucgr.K03094 Eucalyptus grandis HOM05D005845 ORTHO05D007067 6.2e-21 104.4 77 70.1
Pp3c22_8010 Physcomitrium patens HOM05D005845 ORTHO05D007067 6.2e-21 104.4 72 69.4
MELO3C009241.2 Cucumis melo HOM05D005845 ORTHO05D007067 8.1e-21 104.0 102 58.8
Pp3c18_21050 Physcomitrium patens HOM05D005845 ORTHO05D007067 2.6e-19 99.0 120 53.3
Actinidia11275 Actinidia chinensis HOM05D005845 ORTHO05D007067 2.2e-18 95.9 98 57.1
Dinv35574 Davidia involucrata HOM05D005845 ORTHO05D007067 2.9e-18 95.5 100 57.0
AagrBONN_evm.TU.Sc2ySwM_344.1593 Anthoceros agrestis HOM05D005845 ORTHO05D007067 3.8e-18 95.1 73 63.0
Mapoly0151s0005 Marchantia polymorpha HOM05D005845 ORTHO05D007067 4.9e-18 94.7 80 60.0
Oeu023072.1 Olea europaea HOM05D005845 ORTHO05D007067 6.4e-18 94.4 59 79.7
Eucgr.K03086 Eucalyptus grandis HOM05D005845 ORTHO05D007067 5.4e-17 91.3 94 56.4
HPP92_019240 Vanilla planifolia HOM05D005845 ORTHO05D007067 1.6e-16 89.7 89 57.3
Eucgr.G00292 Eucalyptus grandis HOM05D005845 ORTHO05D007067 6.0e-16 87.8 65 67.7
Zm00001eb372120 Zea mays HOM05D005845 ORTHO05D007067 7.9e-16 87.4 54 77.8
SEGI_14936 Sequoiadendron giganteum HOM05D005845 ORTHO05D007067 2.3e-15 85.9 57 73.7
TAR369G0629 Trochodendron aralioides HOM05D005845 ORTHO05D007067 2.3e-15 85.9 100 54.0
CBR_g4596 Chara braunii HOM05D005845 ORTHO05D007067 3.3e-14 82.0 78 53.8
Glyma.18G185300 Glycine max HOM05D005845 ORTHO05D007067 1.6e-13 79.7 44 81.8
TPR.G22204 Trifolium pratense HOM05D000026 ORTHO05D007067 3.1e-12 75.5 53 66.0
TPR.G34843 Trifolium pratense HOM05D005845 ORTHO05D007067 9.0e-12 73.9 44 77.3
Rhsim04G0160800 Rhododendron simsii HOM05D005845 ORTHO05D007067 2.0e-11 72.8 140 40.7
Cre02.g109950 Chlamydomonas reinhardtii HOM05D005845 ORTHO05D007067 1.8e-07 59.7 84 40.5
MCO09G323 Micromonas commoda HOM05D005845 ORTHO05D007067 5.6e-06 54.7 63 44.4


User provided reference genes

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