Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g29480 Brassica carinata HOM05D000958 ORTHO05D000786 1.1e-90 336.7 173 100.0
C05p58380 Brassica napus HOM05D000958 ORTHO05D000786 1.2e-89 333.2 173 98.3
BolC5t34491H Brassica oleracea HOM05D000958 ORTHO05D000786 6.6e-88 327.4 173 97.7
A05p39360 Brassica napus HOM05D000958 ORTHO05D000786 1.5e-84 316.2 175 94.9
BcaC05g29698 Brassica carinata HOM05D000958 ORTHO05D000786 1.6e-57 226.5 187 71.1
Sp3g08100 Schrenkiella parvula HOM05D000958 ORTHO05D000786 1.3e-43 180.3 196 62.8
BolC3t16619H Brassica oleracea HOM05D000958 ORTHO05D000786 2.5e-42 176.0 177 62.1
BraA03t12755Z Brassica rapa HOM05D000958 ORTHO05D000786 1.6e-41 173.3 178 60.7
BcaB03g11588 Brassica carinata HOM05D000958 ORTHO05D000786 3.6e-41 172.2 187 61.0
A03p35830 Brassica napus HOM05D000958 ORTHO05D000786 1.0e-40 170.6 178 60.1
C03p43480 Brassica napus HOM05D000958 ORTHO05D000786 2.5e-39 166.0 177 59.9
Thhalv10020625m.g Eutrema salsugineum HOM05D000958 ORTHO05D000786 2.5e-39 166.0 198 60.1
Carub.0003s0885 Capsella rubella HOM05D000958 ORTHO05D000786 3.3e-39 165.6 197 61.4
CARHR084190 Cardamine hirsuta HOM05D000958 ORTHO05D000786 3.3e-39 165.6 199 58.3
AT3G09760 Arabidopsis thaliana HOM05D000958 ORTHO05D000786 2.4e-37 159.5 199 58.3
AL3G20990 Arabidopsis lyrata HOM05D000958 ORTHO05D000786 3.1e-37 159.1 195 57.4
BcaC01g04245 Brassica carinata HOM05D000958 ORTHO05D000786 3.1e-37 159.1 156 62.2
C05p58360 Brassica napus HOM05D000958 ORTHO05D000786 9.1e-37 157.5 193 54.9
BolC5t34488H Brassica oleracea HOM05D000958 ORTHO05D000786 9.1e-37 157.5 193 54.9
BcaC05g29482 Brassica carinata HOM05D000958 ORTHO05D000786 4.5e-36 155.2 197 53.8
BraA05t22717Z Brassica rapa HOM05D000958 ORTHO05D000786 5.9e-36 154.8 190 55.3
A05p39350 Brassica napus HOM05D000958 ORTHO05D000786 3.2e-34 149.1 194 53.6
Aa31LG3G2200 Aethionema arabicum HOM05D000958 ORTHO05D000786 3.6e-25 119.0 193 50.3
THA.LOC104826973 Tarenaya hassleriana HOM05D000958 ORTHO05D000786 5.2e-24 115.2 183 45.9
Carub.0006s0197 Capsella rubella HOM05D000958 ORTHO05D000786 8.2e-22 107.8 157 49.0
BraA10t45296Z Brassica rapa HOM05D000958 ORTHO05D000786 4.1e-21 105.5 158 48.1
Aa31LG1G21900 Aethionema arabicum HOM05D000958 ORTHO05D000786 3.5e-20 102.4 185 44.3
C09p73410 Brassica napus HOM05D000958 ORTHO05D000786 3.5e-20 102.4 158 46.8
Thhalv10013453m.g Eutrema salsugineum HOM05D000958 ORTHO05D000786 1.1e-18 97.4 185 43.2
Sp6g39540 Schrenkiella parvula HOM05D000958 ORTHO05D000786 1.1e-18 97.4 180 42.8
C09p73630 Brassica napus HOM05D000958 ORTHO05D000786 5.2e-16 88.6 122 47.5
CARHR210170 Cardamine hirsuta HOM05D000958 ORTHO05D000786 1.2e-15 87.4 185 41.1
Duzib093G1740 Durio zibethinus HOM05D000958 ORTHO05D000786 2.0e-15 86.7 166 40.4
Thecc.05G057800 Theobroma cacao HOM05D000958 ORTHO05D000786 4.4e-15 85.5 169 44.4
Manes.08G006100 Manihot esculenta HOM05D000958 ORTHO05D000786 5.7e-15 85.1 178 39.3
BcaC06g32037 Brassica carinata HOM05D000958 ORTHO05D000786 7.5e-15 84.7 122 46.7
BolC9t60093H Brassica oleracea HOM05D000958 ORTHO05D000786 7.5e-15 84.7 122 46.7
CANSAT25G1911 Cannabis sativa HOM05D000958 ORTHO05D000786 2.2e-14 83.2 131 42.7
BraA02t04747Z Brassica rapa HOM05D000958 ORTHO05D000786 1.1e-13 80.9 102 53.9
Dinv37278 Davidia involucrata HOM05D000958 ORTHO05D000786 1.1e-13 80.9 178 41.0
CSS0007627 Camellia sinensis var. sinensis HOM05D000958 ORTHO05D000786 1.8e-13 80.1 166 39.2
Hund20215 Selenicereus undatus HOM05D000958 ORTHO05D000786 1.8e-13 80.1 126 44.4
BcaC03g13022 Brassica carinata HOM05D000958 ORTHO05D000786 3.1e-13 79.3 101 53.5
BolC2t06083H Brassica oleracea HOM05D000958 ORTHO05D000786 3.1e-13 79.3 101 53.5
BcaB05g21847 Brassica carinata HOM05D000958 ORTHO05D000786 1.2e-12 77.4 103 51.5
C02p00860 Brassica napus HOM05D000958 ORTHO05D000786 1.2e-12 77.4 147 43.5
Gohir.A01G215600 Gossypium hirsutum HOM05D000958 ORTHO05D000786 1.2e-12 77.4 164 40.2
AUR62040361 Chenopodium quinoa HOM05D000958 ORTHO05D000786 1.6e-12 77.0 170 39.4
AUR62043145 Chenopodium quinoa HOM05D000958 ORTHO05D000786 1.6e-12 77.0 166 39.2
Gohir.D01G204400 Gossypium hirsutum HOM05D000958 ORTHO05D000786 1.6e-12 77.0 164 40.2
Gorai.002G248600 Gossypium raimondii HOM05D000958 ORTHO05D000786 1.6e-12 77.0 164 40.2
COL.COLO4_27039 Corchorus olitorius HOM05D000958 ORTHO05D000786 5.9e-12 75.1 174 39.7
EL10Ac7g16539 Beta vulgaris HOM05D000958 ORTHO05D000786 7.7e-12 74.7 158 39.9
AL6G12460 Arabidopsis lyrata HOM05D000958 ORTHO05D000786 1.3e-11 73.9 107 47.7
Rhsim04G0147800 Rhododendron simsii HOM05D000958 ORTHO05D000786 1.3e-11 73.9 149 38.9
AT5G03180 Arabidopsis thaliana HOM05D000958 ORTHO05D000786 1.7e-11 73.6 129 45.7
C02p11580 Brassica napus HOM05D000958 ORTHO05D000786 2.2e-11 73.2 137 43.1
vmacro03195 Vaccinium macrocarpon HOM05D000958 ORTHO05D000786 3.8e-11 72.4 121 43.0
Ciclev10011512m.g Citrus clementina HOM05D000958 ORTHO05D000786 6.5e-11 71.6 147 40.8
Migut.J00554 Erythranthe guttata HOM05D000958 ORTHO05D000786 8.5e-11 71.2 175 35.4
Phvul.007G221300 Phaseolus vulgaris HOM05D000958 ORTHO05D000786 8.5e-11 71.2 129 45.0
Sabra06G0101500 Salix brachista HOM05D000958 ORTHO05D000786 8.5e-11 71.2 147 37.4
Eucgr.K03240 Eucalyptus grandis HOM05D000958 ORTHO05D000786 1.1e-10 70.9 154 37.7
SGA_v2.0_scaffold126G33923 Striga asiatica HOM05D000958 ORTHO05D000786 1.1e-10 70.9 181 37.6
Ah.08g211830 Amaranthus hybridus HOM05D000241 ORTHO05D000786 1.5e-10 70.5 108 43.5
Hma1.2p1_0205F.1_g087540 Hydrangea macrophylla HOM05D000958 ORTHO05D000786 2.5e-10 69.7 190 39.5
Rhsim05G0182200 Rhododendron simsii HOM05D000958 ORTHO05D000786 2.5e-10 69.7 148 37.2
CsaV3_1G012850 Cucumis sativus L. HOM05D000958 ORTHO05D000786 3.2e-10 69.3 151 36.4
Dinv32754 Davidia involucrata HOM05D000958 ORTHO05D000786 3.2e-10 69.3 109 47.7
CAN.G888.11 Capsicum annuum HOM05D000958 ORTHO05D000786 4.2e-10 68.9 109 46.8
DCAR_009291 Daucus carota HOM05D000958 ORTHO05D000786 4.2e-10 68.9 172 34.9
HanXRQChr07g0195591 Helianthus annuus HOM05D000958 ORTHO05D000786 4.2e-10 68.9 117 44.4
TWI74G1408 Tripterygium wilfordii HOM05D000958 ORTHO05D000786 4.2e-10 68.9 183 33.9
BcaB05g22655 Brassica carinata HOM05D000958 ORTHO05D000786 5.5e-10 68.6 116 46.6
SGA_v2.0_scaffold75G24868 Striga asiatica HOM05D000958 ORTHO05D000786 5.5e-10 68.6 156 37.8
Ah.15g092260 Amaranthus hybridus HOM05D000958 ORTHO05D000786 7.2e-10 68.2 139 39.6
CiPaw.14G080200 Carya illinoinensis HOM05D000958 ORTHO05D000786 7.2e-10 68.2 134 39.6
Cc06_g03850 Coffea canephora HOM05D000958 ORTHO05D000786 7.2e-10 68.2 150 38.7
ECA238G3444 Erigeron canadensis HOM05D000958 ORTHO05D000786 7.2e-10 68.2 163 38.0
HanXRQChr14g0454201 Helianthus annuus HOM05D000958 ORTHO05D000786 7.2e-10 68.2 137 42.3
BcaC03g13958 Brassica carinata HOM05D000958 ORTHO05D000786 9.4e-10 67.8 117 46.2
MELO3C005058.2 Cucumis melo HOM05D000958 ORTHO05D000786 9.4e-10 67.8 151 37.1
A10p17770 Brassica napus HOM05D000958 ORTHO05D000786 1.2e-09 67.4 112 44.6
BraA10t43854Z Brassica rapa HOM05D000958 ORTHO05D000786 1.2e-09 67.4 112 44.6
CiPaw.09G177200 Carya illinoinensis HOM05D000958 ORTHO05D000786 1.2e-09 67.4 135 37.8
PGR142G2882 Punica granatum HOM05D000958 ORTHO05D000786 1.2e-09 67.4 134 41.8
A10p32760 Brassica napus HOM05D000958 ORTHO05D040002 2.1e-09 66.6 67 58.2
Haze_23840 Corylus avellana HOM05D000958 ORTHO05D000786 2.1e-09 66.6 159 35.8
Sabra09G0008200 Salix brachista HOM05D000958 ORTHO05D000786 2.1e-09 66.6 135 38.5
Ca_11463_v3 Cicer arietinum L. HOM05D000958 ORTHO05D000786 2.7e-09 66.2 149 42.3
Prupe.6G100700 Prunus persica HOM05D000958 ORTHO05D000786 2.7e-09 66.2 145 40.0
QL01p022338 Quercus lobata HOM05D000958 ORTHO05D000786 2.7e-09 66.2 144 38.9
arahy.Tifrunner.gnm1.ann1.A59EXP Arachis hypogaea HOM05D000958 ORTHO05D000786 3.6e-09 65.9 158 38.0
arahy.Tifrunner.gnm1.ann1.DIL2CF Arachis hypogaea HOM05D000958 ORTHO05D000786 3.6e-09 65.9 158 38.0
arahy.Tifrunner.gnm1.ann1.HZCM81 Arachis hypogaea HOM05D000958 ORTHO05D000786 3.6e-09 65.9 158 38.0
arahy.Tifrunner.gnm1.ann1.UIUY7Y Arachis hypogaea HOM05D000958 ORTHO05D000786 3.6e-09 65.9 158 38.0
MSTRG.17808 Avicennia marina HOM05D000958 ORTHO05D000786 3.6e-09 65.9 184 34.8
AT5G60580 Arabidopsis thaliana HOM05D000958 ORTHO05D000786 4.7e-09 65.5 117 42.7
Cfa017538 Carpinus fangiana HOM05D000958 ORTHO05D000786 4.7e-09 65.5 121 38.8
ClCG03G002200 Citrullus lanatus HOM05D000958 ORTHO05D000786 4.7e-09 65.5 186 35.5
Manes.11G144500 Manihot esculenta HOM05D000958 ORTHO05D000786 4.7e-09 65.5 136 39.0
Sed0022909 Sechium edule HOM05D000958 ORTHO05D000786 4.7e-09 65.5 187 35.3
TWI79G1047 Tripterygium wilfordii HOM05D000958 ORTHO05D000786 4.7e-09 65.5 132 37.1
Migut.D02218 Erythranthe guttata HOM05D000958 ORTHO05D000786 6.1e-09 65.1 126 36.5
VMungo0720G0411 Vigna mungo HOM05D000958 ORTHO05D000786 6.1e-09 65.1 129 43.4
BolC2t07244H Brassica oleracea HOM05D000958 ORTHO05D000786 8.0e-09 64.7 117 45.3
CSS0013358 Camellia sinensis var. sinensis HOM05D000958 ORTHO05D000786 8.0e-09 64.7 186 37.6
Potri.009G013300 Populus trichocarpa HOM05D000958 ORTHO05D000786 8.0e-09 64.7 133 40.6
Sc07g0004790 Simmondsia chinensis HOM05D000958 ORTHO05D000786 8.0e-09 64.7 131 38.9
vmacro20034 Vaccinium macrocarpon HOM05D000958 ORTHO05D000786 8.0e-09 64.7 126 38.1
Glyma.13G139200 Glycine max HOM05D000958 ORTHO05D000786 1.4e-08 63.9 161 37.3
Nitab4.5_0005150g0030 Nicotiana tabacum HOM05D000958 ORTHO05D000786 1.4e-08 63.9 78 51.3
Potri.006G129000 Populus trichocarpa HOM05D000958 ORTHO05D000786 1.4e-08 63.9 151 35.1
SalBow3G4423 Salvia bowleyana HOM05D000958 ORTHO05D000786 1.4e-08 63.9 107 43.0
C09p53220 Brassica napus HOM05D000958 ORTHO05D000786 2.3e-08 63.2 112 42.0
BolC9t58197H Brassica oleracea HOM05D000958 ORTHO05D000786 2.3e-08 63.2 112 42.0
CSS0049362 Camellia sinensis var. sinensis HOM05D000958 ORTHO05D000786 2.3e-08 63.2 114 41.2
CSS0049615 Camellia sinensis var. sinensis HOM05D000958 ORTHO05D000786 2.3e-08 63.2 114 41.2
Cfa011323 Carpinus fangiana HOM05D000958 ORTHO05D000786 2.3e-08 63.2 159 35.8
vmacro08720 Vaccinium macrocarpon HOM05D000958 ORTHO05D000786 2.3e-08 63.2 186 33.9
AL8G37170 Arabidopsis lyrata HOM05D000958 ORTHO05D000786 3.0e-08 62.8 83 48.2
BcaC04g19716 Brassica carinata HOM05D000958 ORTHO05D000786 3.0e-08 62.8 131 39.7
Nitab4.5_0000101g0050 Nicotiana tabacum HOM05D000958 ORTHO05D000786 3.0e-08 62.8 133 41.4
Oeu001265.1 Olea europaea HOM05D000958 ORTHO05D000786 3.0e-08 62.8 110 43.6
Aa31LG4G14550 Aethionema arabicum HOM05D000958 ORTHO05D000786 4.0e-08 62.4 150 32.0
Duzib168G0625 Durio zibethinus HOM05D000958 ORTHO05D000786 4.0e-08 62.4 136 41.2
Lj1C191G1 Lonicera japonica HOM05D000958 ORTHO05D000786 4.0e-08 62.4 158 36.7
MBI10_g06417_MAGBIO Magnolia biondii HOM05D000958 ORTHO05D000786 4.0e-08 62.4 175 34.3
BcaB08g36353 Brassica carinata HOM05D000958 ORTHO05D000786 5.2e-08 62.0 133 38.3
Sed0011267 Sechium edule HOM05D000958 ORTHO05D000786 5.2e-08 62.0 138 37.0
Peaxi162Scf00182g00112 Petunia axillaris HOM05D000958 ORTHO05D000786 6.8e-08 61.6 77 48.1
Rhsim13G0094000 Rhododendron simsii HOM05D000958 ORTHO05D000786 6.8e-08 61.6 180 34.4
unitig_8.g4104 Utricularia gibba HOM05D000958 ORTHO05D000786 8.8e-08 61.2 186 32.3
MD04G1099800 Malus domestica HOM05D000958 ORTHO05D000786 1.2e-07 60.8 170 32.4
FAN25G1476 Fragaria x ananassa HOM05D000958 ORTHO05D000786 2.0e-07 60.1 135 39.3
HanXRQChr13g0403501 Helianthus annuus HOM05D000958 ORTHO05D000786 2.0e-07 60.1 131 37.4
TWI31G0053 Tripterygium wilfordii HOM05D000958 ORTHO05D000786 2.0e-07 60.1 130 37.7
Manes.04G021800 Manihot esculenta HOM05D000958 ORTHO05D000786 2.6e-07 59.7 141 39.0
Prupe.6G238100 Prunus persica HOM05D000958 ORTHO05D000786 2.6e-07 59.7 190 30.5
SHI12527 Sapria himalayana HOM05D000958 ORTHO05D000786 2.6e-07 59.7 142 35.9
Nitab4.5_0003701g0020 Nicotiana tabacum HOM05D000958 ORTHO05D000786 3.4e-07 59.3 112 37.5
Sp6g22150 Schrenkiella parvula HOM05D000958 ORTHO05D000786 3.4e-07 59.3 83 47.0
THA.LOC104810853 Tarenaya hassleriana HOM05D000958 ORTHO05D000786 3.4e-07 59.3 76 50.0
TPR.G15530 Trifolium pratense HOM05D000958 ORTHO05D000786 3.4e-07 59.3 137 38.7
BNapus_Darmor_BZH_scaffold_38p00020 Brassica napus HOM05D000958 ORTHO05D000786 4.4e-07 58.9 84 48.8
BraA02t05715Z Brassica rapa HOM05D000958 ORTHO05D000786 4.4e-07 58.9 84 48.8
MD11G1134800 Malus domestica HOM05D000958 ORTHO05D000786 4.4e-07 58.9 145 36.6
Aqoxy1G01624 Aquilegia oxysepala HOM05D000958 ORTHO05D000786 5.7e-07 58.5 121 39.7
Aqoxy5G04135 Aquilegia oxysepala HOM05D000958 ORTHO05D000786 5.7e-07 58.5 121 39.7
Psat6g070760 Pisum sativum HOM05D000958 ORTHO05D000786 5.7e-07 58.5 149 42.3
Psat7g224800 Pisum sativum HOM05D000958 ORTHO05D000786 7.5e-07 58.2 167 37.1
Thecc.09G339800 Theobroma cacao HOM05D000958 ORTHO05D000786 7.5e-07 58.2 136 39.0
TAR623G1263 Trochodendron aralioides HOM05D000958 ORTHO05D000786 7.5e-07 58.2 192 33.9
Thhalv10013381m.g Eutrema salsugineum HOM05D000958 ORTHO05D000786 9.8e-07 57.8 83 47.0
FvH4_3g32510 Fragaria vesca HOM05D000958 ORTHO05D000786 9.8e-07 57.8 137 38.7
FAN11G1310 Fragaria x ananassa HOM05D000958 ORTHO05D000786 9.8e-07 57.8 137 38.7
Oeu030178.1 Olea europaea HOM05D000958 ORTHO05D000786 9.8e-07 57.8 83 43.4
Aqoxy5G03049 Aquilegia oxysepala HOM05D000958 ORTHO05D000786 1.3e-06 57.4 100 42.0
Carub.0008s2126 Capsella rubella HOM05D000958 ORTHO05D000786 1.7e-06 57.0 83 43.4
MELO3C025770.2 Cucumis melo HOM05D000958 ORTHO05D000786 1.7e-06 57.0 121 38.8
Lsat_1_v5_gn_2_108761 Lactuca sativa HOM05D000958 ORTHO05D000786 1.7e-06 57.0 58 58.6
RcHm_v2.0_Chr5g0059571 Rosa chinensis HOM05D000958 ORTHO05D000786 1.7e-06 57.0 188 34.0
Aa31LG1G12560 Aethionema arabicum HOM05D000958 ORTHO05D000786 2.2e-06 56.6 117 40.2
FAN21G1580 Fragaria x ananassa HOM05D000958 ORTHO05D000786 2.2e-06 56.6 137 38.0
Actinidia07133 Actinidia chinensis HOM05D000958 ORTHO05D000786 2.8e-06 56.2 163 33.7
arahy.Tifrunner.gnm1.ann1.0990KC Arachis hypogaea HOM05D000958 ORTHO05D000786 2.8e-06 56.2 140 33.6
arahy.Tifrunner.gnm1.ann1.IW12TT Arachis hypogaea HOM05D000958 ORTHO05D000786 2.8e-06 56.2 140 33.6
Haze_20610 Corylus avellana HOM05D000958 ORTHO05D000786 2.8e-06 56.2 75 41.3
Lj5g0023219 Lotus japonicus HOM05D000958 ORTHO05D000786 2.8e-06 56.2 154 36.4
Ciclev10028219m.g Citrus clementina HOM05D000958 ORTHO05D000786 3.7e-06 55.8 108 42.6
Glyma.12G068000 Glycine max HOM05D000958 ORTHO05D000786 3.7e-06 55.8 120 40.0
Gohir.A08G197300 Gossypium hirsutum HOM05D000958 ORTHO05D000786 3.7e-06 55.8 129 39.5
MSTRG.18656 Avicennia marina HOM05D000958 ORTHO05D000786 4.9e-06 55.5 167 32.9
CsaV3_6G013890 Cucumis sativus L. HOM05D000958 ORTHO05D000786 4.9e-06 55.5 121 38.8
FAN09G1826 Fragaria x ananassa HOM05D000958 ORTHO05D000786 4.9e-06 55.5 169 32.0
Gohir.D08G214500 Gossypium hirsutum HOM05D000958 ORTHO05D000786 4.9e-06 55.5 129 39.5
Gorai.004G228500 Gossypium raimondii HOM05D000958 ORTHO05D000786 4.9e-06 55.5 129 39.5
CAN.G631.21 Capsicum annuum HOM05D000958 ORTHO05D000786 6.3e-06 55.1 169 34.3
CARHR274240 Cardamine hirsuta HOM05D000958 ORTHO05D000786 6.3e-06 55.1 83 44.6
PSO339G4144 Papaver somniferum HOM05D000958 ORTHO05D000786 6.3e-06 55.1 85 43.5
ClCG02G021130 Citrullus lanatus HOM05D000958 ORTHO05D000786 8.3e-06 54.7 121 38.8
FAN02G1349 Fragaria x ananassa HOM05D000958 ORTHO05D000786 8.3e-06 54.7 169 32.0
Lj3g0023136 Lotus japonicus HOM05D000958 ORTHO05D000786 8.3e-06 54.7 132 40.2
MD03G1116800 Malus domestica HOM05D000958 ORTHO05D000786 8.3e-06 54.7 145 35.9
PSO384G0883 Papaver somniferum HOM05D000958 ORTHO05D000786 8.3e-06 54.7 86 43.0
Solyc09g007680.4 Solanum lycopersicum HOM05D000958 ORTHO05D000786 8.3e-06 54.7 169 34.3


User provided reference genes

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