Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g29392 Brassica carinata HOM05D004604 ORTHO05D005744 0.0e+00 1113.2 582 100.0
C05p56850 Brassica napus HOM05D004604 ORTHO05D005744 0.0e+00 1113.2 582 100.0
BolC5t34349H Brassica oleracea HOM05D004604 ORTHO05D005744 0.0e+00 1111.7 582 99.8
A05p38060 Brassica napus HOM05D004604 ORTHO05D005744 7.2e-304 1046.6 585 94.5
BraA05t22598Z Brassica rapa HOM05D004604 ORTHO05D005744 7.2e-304 1046.6 585 94.5
BcaB06g25636 Brassica carinata HOM05D004604 ORTHO05D005744 4.8e-292 1007.3 584 91.1
Sp3g09520 Schrenkiella parvula HOM05D004604 ORTHO05D005744 1.0e-265 919.8 597 80.7
AL3G22760 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 6.4e-252 874.0 597 78.4
Carub.0003s1055 Capsella rubella HOM05D004604 ORTHO05D005744 6.0e-250 867.5 601 76.2
CARHR085800 Cardamine hirsuta HOM05D004604 ORTHO05D005744 3.9e-233 811.6 598 73.6
Sp6g37190 Schrenkiella parvula HOM05D004604 ORTHO05D005744 6.3e-207 724.5 627 63.3
Aa31LG3G4550 Aethionema arabicum HOM05D004604 ORTHO05D005744 4.5e-205 718.4 642 62.0
Aa31LG11G6730 Aethionema arabicum HOM05D004604 ORTHO05D005744 1.7e-204 716.5 610 61.3
THA.LOC104816553 Tarenaya hassleriana HOM05D004604 ORTHO05D005744 2.7e-202 709.1 628 61.5
AL6G15600 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 1.3e-201 706.8 621 62.6
AT5G05700 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 1.1e-200 703.7 636 61.0
C09p71140 Brassica napus HOM05D004604 ORTHO05D005744 2.6e-197 692.6 606 62.5
A10p30660 Brassica napus HOM05D004604 ORTHO05D005744 6.5e-196 688.0 603 62.4
BolC9t59876H Brassica oleracea HOM05D004604 ORTHO05D005744 4.2e-195 685.3 604 62.3
CARHR207580 Cardamine hirsuta HOM05D004604 ORTHO05D005744 2.0e-192 676.4 588 62.1
BraA10t45107Z Brassica rapa HOM05D004604 ORTHO05D005744 2.2e-191 672.9 641 58.7
BcaC06g32278 Brassica carinata HOM05D004604 ORTHO05D005744 5.0e-188 661.8 604 60.4
Carub.0006s0459 Capsella rubella HOM05D004604 ORTHO05D005744 5.9e-181 638.3 572 61.4
AT3G11240 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 3.8e-180 635.6 450 75.6
Gorai.011G285800 Gossypium raimondii HOM05D004604 ORTHO05D005744 3.1e-174 615.9 632 52.4
Manes.10G013900 Manihot esculenta HOM05D004604 ORTHO05D005744 4.1e-174 615.5 625 52.3
Gohir.A10G235000 Gossypium hirsutum HOM05D004604 ORTHO05D005744 1.6e-173 613.6 632 52.1
arahy.Tifrunner.gnm1.ann1.E2DHW8 Arachis hypogaea HOM05D004604 ORTHO05D005744 1.9e-171 606.7 620 51.5
Potri.010G190100 Populus trichocarpa HOM05D004604 ORTHO05D005744 4.7e-170 602.1 618 53.9
RcHm_v2.0_Chr1g0369991 Rosa chinensis HOM05D004604 ORTHO05D005744 1.0e-169 600.9 609 53.2
CiPaw.02G191600 Carya illinoinensis HOM05D004604 ORTHO05D005744 1.3e-167 594.0 622 52.6
Sabra10G0146600 Salix brachista HOM05D004604 ORTHO05D005744 1.3e-167 594.0 619 51.5
Cpa.g.sc19.189 Carica papaya HOM05D004604 ORTHO05D005744 4.8e-167 592.0 632 51.1
Cfa001330 Carpinus fangiana HOM05D004604 ORTHO05D005744 4.8e-167 592.0 632 52.4
Ciclev10030943m.g Citrus clementina HOM05D004604 ORTHO05D005744 6.3e-167 591.7 625 51.4
MD07G1220300 Malus domestica HOM05D004604 ORTHO05D005744 1.4e-166 590.5 632 51.4
TWI09G1217 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 1.4e-166 590.5 630 51.4
CSS0014761 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 1.8e-166 590.1 629 50.6
CANSAT35G0855 Cannabis sativa HOM05D004604 ORTHO05D005744 2.4e-166 589.7 623 52.0
FAN10G0865 Fragaria x ananassa HOM05D004604 ORTHO05D005744 9.1e-166 587.8 624 51.4
MD01G1132500 Malus domestica HOM05D004604 ORTHO05D005744 9.1e-166 587.8 627 51.8
Glyma.18G028600 Glycine max HOM05D004604 ORTHO05D005744 2.7e-165 586.3 614 50.5
Lalb_Chr18g0052631 Lupinus albus HOM05D004604 ORTHO05D005744 1.0e-164 584.3 631 50.6
Thecc.10G020600 Theobroma cacao HOM05D004604 ORTHO05D005744 3.2e-163 579.3 633 50.2
Nn2g11459 Nelumbo nucifera HOM05D004604 ORTHO05D005744 5.5e-163 578.6 638 50.3
Prupe.2G248700 Prunus persica HOM05D004604 ORTHO05D005744 5.5e-163 578.6 628 51.1
Hund13846 Selenicereus undatus HOM05D004604 ORTHO05D005744 2.1e-162 576.6 632 50.6
Phvul.001G241900 Phaseolus vulgaris HOM05D004604 ORTHO05D005744 3.6e-162 575.9 624 48.9
Medtr3g070310 Medicago truncatula HOM05D004604 ORTHO05D005744 1.8e-161 573.5 626 50.0
PGR044G2346 Punica granatum HOM05D004604 ORTHO05D005744 3.0e-161 572.8 628 50.5
Rhsim03G0142100 Rhododendron simsii HOM05D004604 ORTHO05D005744 3.0e-161 572.8 624 49.4
Migut.F01373 Erythranthe guttata HOM05D004604 ORTHO05D005744 4.0e-161 572.4 594 52.4
Lj1C953T18 Lonicera japonica HOM05D004604 ORTHO05D005744 4.0e-161 572.4 612 50.3
TWI73G0703 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 5.2e-161 572.0 667 48.3
FvH4_7g24330 Fragaria vesca HOM05D004604 ORTHO05D005744 3.4e-160 569.3 613 51.2
Hma1.2p1_0446F.1_g154570 Hydrangea macrophylla HOM05D004604 ORTHO05D005744 5.7e-160 568.5 624 52.2
Glyma.11G228500 Glycine max HOM05D004604 ORTHO05D005744 7.5e-160 568.2 617 50.4
Lalb_Chr15g0084181 Lupinus albus HOM05D004604 ORTHO05D005744 7.5e-160 568.2 630 49.8
Psat5g126400 Pisum sativum HOM05D004604 ORTHO05D005744 2.8e-159 566.2 632 48.7
ECA238G1235 Erigeron canadensis HOM05D004604 ORTHO05D005744 6.3e-159 565.1 600 50.3
Ca_15268_v3 Cicer arietinum L. HOM05D004604 ORTHO05D005744 1.1e-158 564.3 629 49.1
Migut.F01374 Erythranthe guttata HOM05D004604 ORTHO05D005744 1.1e-158 564.3 575 52.5
FAN01G3126 Fragaria x ananassa HOM05D004604 ORTHO05D005744 1.1e-158 564.3 665 48.0
Lj6g0016498 Lotus japonicus HOM05D004604 ORTHO05D005744 1.1e-158 564.3 627 48.5
EL10Ac2g04814 Beta vulgaris HOM05D004604 ORTHO05D005744 3.1e-158 562.8 632 50.0
VMungo1383G0266 Vigna mungo HOM05D004604 ORTHO05D005744 5.4e-158 562.0 621 48.0
Duzib114G0112 Durio zibethinus HOM05D004604 ORTHO05D005744 1.2e-157 560.8 628 49.8
TPR.G2507 Trifolium pratense HOM05D004604 ORTHO05D005744 1.2e-157 560.8 628 48.6
CSS0028164 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 5.9e-157 558.5 636 50.5
Cc02_g06650 Coffea canephora HOM05D004604 ORTHO05D005744 7.8e-157 558.1 630 50.0
TAR623G0226 Trochodendron aralioides HOM05D004604 ORTHO05D005744 1.0e-156 557.8 650 49.2
ClCG11G006230 Citrullus lanatus HOM05D004604 ORTHO05D005744 2.3e-156 556.6 637 48.0
HanXRQChr14g0459851 Helianthus annuus HOM05D004604 ORTHO05D005744 2.3e-156 556.6 612 50.0
HanXRQChr14g0459841 Helianthus annuus HOM05D004604 ORTHO05D005744 6.6e-156 555.1 593 51.3
FAN06G3796 Fragaria x ananassa HOM05D004604 ORTHO05D005744 2.5e-155 553.1 574 52.1
Dinv34395 Davidia involucrata HOM05D004604 ORTHO05D005744 3.3e-155 552.7 514 56.4
Atru.chr12.19 Acer truncatum HOM05D004604 ORTHO05D005744 9.5e-155 551.2 637 49.6
Sopen06g017720 Solanum pennellii HOM05D004604 ORTHO05D005744 2.8e-154 549.7 629 49.6
SGA_v2.0_scaffold76G25082 Striga asiatica HOM05D004604 ORTHO05D005744 6.1e-154 548.5 607 51.6
Lsat_1_v5_gn_2_122780 Lactuca sativa HOM05D004604 ORTHO05D005744 8.0e-154 548.1 625 47.8
Ah.16g103410 Amaranthus hybridus HOM05D004604 ORTHO05D005744 1.0e-153 547.7 629 48.2
Peaxi162Scf00825g00019 Petunia axillaris HOM05D004604 ORTHO05D005744 1.8e-153 547.0 620 50.2
Eucgr.J00228 Eucalyptus grandis HOM05D004604 ORTHO05D005744 8.9e-153 544.7 603 49.9
Aqoxy4G02603 Aquilegia oxysepala HOM05D004604 ORTHO05D005744 2.6e-152 543.1 614 48.4
CsaV3_6G001760 Cucumis sativus L. HOM05D004604 ORTHO05D005744 3.4e-152 542.7 638 48.7
PGSC0003DMG400023817 Solanum tuberosum HOM05D004604 ORTHO05D005744 9.8e-152 541.2 626 49.2
PSO384G4393 Papaver somniferum HOM05D004604 ORTHO05D005744 2.2e-151 540.0 631 46.9
Solyc06g051760.3 Solanum lycopersicum HOM05D004604 ORTHO05D005744 6.4e-151 538.5 632 47.9
CAN.G17.11 Capsicum annuum HOM05D004604 ORTHO05D005744 8.3e-151 538.1 617 50.7
Eucgr.J00226 Eucalyptus grandis HOM05D004604 ORTHO05D005744 8.3e-151 538.1 646 48.1
PSO339G2357 Papaver somniferum HOM05D004604 ORTHO05D005744 1.2e-149 534.3 643 46.2
Nitab4.5_0000802g0040 Nicotiana tabacum HOM05D004604 ORTHO05D005744 1.7e-148 530.4 615 48.9
Nitab4.5_0005174g0010 Nicotiana tabacum HOM05D004604 ORTHO05D005744 3.9e-148 529.3 615 49.3
Cpa.g.sc19.187 Carica papaya HOM05D004604 ORTHO05D005744 5.0e-148 528.9 506 55.3
Sabra08G0049200 Salix brachista HOM05D004604 ORTHO05D005744 8.6e-148 528.1 496 56.0
Potri.008G067000 Populus trichocarpa HOM05D004604 ORTHO05D005744 1.5e-147 527.3 487 55.4
Eucgr.J00230 Eucalyptus grandis HOM05D004604 ORTHO05D005744 7.3e-147 525.0 608 47.7
Os05g0446800 Oryza sativa ssp. japonica HOM05D004604 ORTHO05D005744 1.8e-145 520.4 627 46.6
Hund15948 Selenicereus undatus HOM05D004604 ORTHO05D005744 2.3e-145 520.0 628 46.5
TAR369G0014 Trochodendron aralioides HOM05D004604 ORTHO05D005744 4.0e-145 519.2 514 54.1
MELO3C008290.2 Cucumis melo HOM05D004604 ORTHO05D005744 6.8e-145 518.5 636 46.7
Dinv17981 Davidia involucrata HOM05D004604 ORTHO05D005744 5.8e-144 515.4 499 55.1
MSTRG.213 Avicennia marina HOM05D004604 ORTHO05D005744 9.8e-144 514.6 505 53.9
MBI05_g34496_MAGBIO Magnolia biondii HOM05D004604 ORTHO05D005744 2.9e-143 513.1 539 52.5
ATR0618G256 Amborella trichopoda HOM05D004604 ORTHO05D005744 4.9e-143 512.3 641 47.3
arahy.Tifrunner.gnm1.ann1.C37ZT5 Arachis hypogaea HOM05D004604 ORTHO05D005744 4.9e-143 512.3 564 49.3
AUR62022867 Chenopodium quinoa HOM05D004604 ORTHO05D005744 3.0e-140 503.1 504 52.0
Oeu048694.1 Olea europaea HOM05D004604 ORTHO05D005744 8.6e-140 501.5 495 54.5
unitig_62.g23928 Utricularia gibba HOM05D004604 ORTHO05D005744 7.3e-139 498.4 638 44.7
Cpa.g.sc19.188 Carica papaya HOM05D004604 ORTHO05D005744 2.8e-138 496.5 484 53.3
Sed0013753 Sechium edule HOM05D004604 ORTHO05D005744 4.7e-138 495.7 480 54.0
DCAR_028567 Daucus carota HOM05D004604 ORTHO05D005744 8.1e-138 495.0 587 48.0
FAN03G0827 Fragaria x ananassa HOM05D004604 ORTHO05D005744 8.1e-138 495.0 682 44.4
Zm00001eb348230 Zea mays HOM05D004604 ORTHO05D005744 7.5e-136 488.4 523 50.1
CDE03G0502 Ceratophyllum demersum HOM05D004604 ORTHO05D005744 1.9e-134 483.8 524 50.4
Haze_17214 Corylus avellana HOM05D004604 ORTHO05D005744 1.0e-132 478.0 649 45.0
GSVIVG01032843001 Vitis vinifera HOM05D004604 ORTHO05D005744 1.0e-132 478.0 606 46.7
Eucgr.J00232 Eucalyptus grandis HOM05D004604 ORTHO05D005744 2.8e-130 469.9 563 47.8
Haze_17213 Corylus avellana HOM05D004604 ORTHO05D005744 4.7e-130 469.2 625 45.1
vmacro06977 Vaccinium macrocarpon HOM05D004604 ORTHO05D005744 1.9e-126 457.2 630 44.1
Gohir.D10G247400 Gossypium hirsutum HOM05D004604 ORTHO05D005744 4.1e-126 456.1 484 50.2
SEGI_40640 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 2.1e-125 453.8 618 41.9
Sc11g0007180 Simmondsia chinensis HOM05D004604 ORTHO05D005744 2.9e-119 433.3 521 47.2
Peaxi162Scf01208g00144 Petunia axillaris HOM05D004604 ORTHO05D005744 1.1e-118 431.4 522 47.1
HanXRQChr06g0172261 Helianthus annuus HOM05D004604 ORTHO05D005744 1.3e-114 417.9 464 50.0
Actinidia29693 Actinidia chinensis HOM05D004604 ORTHO05D005744 9.0e-113 411.8 607 41.2
Eucgr.J00227 Eucalyptus grandis HOM05D004604 ORTHO05D005744 2.9e-111 406.8 426 50.5
Pp3c3_24950 Physcomitrium patens HOM05D004604 ORTHO05D005744 2.4e-110 403.7 595 40.8
AagrBONN_evm.TU.Sc2ySwM_117.2751 Anthoceros agrestis HOM05D004604 ORTHO05D005744 5.4e-110 402.5 604 39.2
Thhalv10013820m.g Eutrema salsugineum HOM05D004604 ORTHO05D005744 1.6e-109 401.0 385 58.4
Mapoly0067s0057 Marchantia polymorpha HOM05D004604 ORTHO05D005744 3.3e-107 393.3 489 44.4
SEGI_28443 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 1.2e-104 384.8 474 44.3
SEGI_33236 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 1.2e-104 384.8 474 44.3
SMO118G0549 Selaginella moellendorffii HOM05D004604 ORTHO05D005744 1.4e-102 377.9 484 45.9
AUR62012235 Chenopodium quinoa HOM05D004604 ORTHO05D005744 7.4e-99 365.5 463 44.7
COL.COLO4_25696 Corchorus olitorius HOM05D004604 ORTHO05D005744 1.1e-91 341.7 597 38.2
Actinidia33931 Actinidia chinensis HOM05D004604 ORTHO05D005744 9.7e-75 285.4 609 34.3
CBR_g49483 Chara braunii HOM05D004604 ORTHO05D005744 6.9e-73 279.3 507 36.5
PRCOL_00002395 Prasinoderma coloniale HOM05D004604 ORTHO05D005744 3.6e-69 266.9 654 30.7
arahy.Tifrunner.gnm1.ann1.3RRJ97 Arachis hypogaea HOM05D004604 ORTHO05D005744 3.8e-55 220.3 361 39.9
MCO15G553 Micromonas commoda HOM05D004604 ORTHO05D005744 1.2e-53 215.3 413 32.7
HPP92_018034 Vanilla planifolia HOM05D004604 ORTHO05D005744 8.8e-52 209.1 286 44.4
Cre13.g580600 Chlamydomonas reinhardtii HOM05D004604 ORTHO05D005744 6.8e-44 183.0 199 45.7
PSO339G5386 Papaver somniferum HOM05D004604 ORTHO05D005744 4.9e-34 150.2 127 58.3
Cfa022588 Carpinus fangiana HOM05D004604 ORTHO05D005744 9.2e-25 119.4 196 35.2
Peaxi162Scf01208g00156 Petunia axillaris HOM05D004604 ORTHO05D005744 1.5e-19 102.1 59 74.6
HPP92_018033 Vanilla planifolia HOM05D004604 ORTHO05D005744 4.6e-16 90.5 159 36.5
CBR_g49485 Chara braunii HOM05D000019 ORTHO05D000048 1.6e-08 65.5 43 67.4
CDE04G1491 Ceratophyllum demersum HOM05D004604 ORTHO05D005744 5.6e-06 57.0 56 53.6


User provided reference genes

Program Settings