Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g29301 Brassica carinata HOM05D007923 ORTHO05D009651 1.2e-97 359.8 178 100.0
C05p55860 Brassica napus HOM05D007923 ORTHO05D009651 1.2e-97 359.8 178 100.0
BolC5t34255H Brassica oleracea HOM05D007923 ORTHO05D009651 1.2e-97 359.8 178 100.0
A05p37330 Brassica napus HOM05D007923 ORTHO05D009651 8.3e-86 320.5 178 91.0
BraA05t22530Z Brassica rapa HOM05D007923 ORTHO05D009651 8.3e-86 320.5 178 91.0
BcaC05g29300 Brassica carinata HOM05D007923 ORTHO05D009651 2.3e-83 312.4 178 88.2
C05p55840 Brassica napus HOM05D007923 ORTHO05D009651 2.3e-83 312.4 178 88.2
BolC5t34253H Brassica oleracea HOM05D007923 ORTHO05D009651 2.3e-83 312.4 178 88.2
BcaC05g29302 Brassica carinata HOM05D007923 ORTHO05D009651 4.9e-62 241.5 165 73.9
C05p55870 Brassica napus HOM05D007923 ORTHO05D009651 4.9e-62 241.5 165 73.9
BolC5t34256H Brassica oleracea HOM05D007923 ORTHO05D009651 4.9e-62 241.5 165 73.9
BcaB06g25567 Brassica carinata HOM05D007923 ORTHO05D009651 4.2e-61 238.4 165 73.9
BcaC05g29304 Brassica carinata HOM05D007923 ORTHO05D009651 1.7e-59 233.0 165 72.1
A05p37350 Brassica napus HOM05D007923 ORTHO05D009651 1.7e-59 233.0 165 72.7
C05p55880 Brassica napus HOM05D007923 ORTHO05D009651 1.7e-59 233.0 165 72.1
BolC5t34257H Brassica oleracea HOM05D007923 ORTHO05D009651 1.7e-59 233.0 165 72.1
BraA05t22532Z Brassica rapa HOM05D007923 ORTHO05D009651 1.7e-59 233.0 165 72.7
BraA05t22534Z Brassica rapa HOM05D007923 ORTHO05D009651 8.7e-59 230.7 165 72.1
BraA05t22533Z Brassica rapa HOM05D007923 ORTHO05D009651 1.1e-58 230.3 165 71.5
BraA05t22535Z Brassica rapa HOM05D007923 ORTHO05D009651 1.5e-58 229.9 165 70.3
A05p37340 Brassica napus HOM05D007923 ORTHO05D009651 1.9e-58 229.6 165 71.5
BraA05t22531Z Brassica rapa HOM05D007923 ORTHO05D009651 1.9e-58 229.6 165 71.5
C05p55890 Brassica napus HOM05D007923 ORTHO05D009651 4.3e-58 228.4 165 70.9
BolC5t34258H Brassica oleracea HOM05D007923 ORTHO05D009651 4.3e-58 228.4 165 70.9
A05p37360 Brassica napus HOM05D007923 ORTHO05D009651 9.6e-58 227.3 160 73.1
BcaB06g25556 Brassica carinata HOM05D007923 ORTHO05D009651 2.1e-57 226.1 166 71.1
Sp3g10220 Schrenkiella parvula HOM05D007923 ORTHO05D009651 1.2e-52 210.3 179 60.9
BcaC05g29305 Brassica carinata HOM05D007923 ORTHO05D009651 1.0e-51 207.2 151 68.9
CARHR086550 Cardamine hirsuta HOM05D007923 ORTHO05D009651 1.9e-50 203.0 175 56.6
AT1G47470 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 2.1e-49 199.5 175 57.1
AL3G23600 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 6.2e-49 198.0 175 58.3
AT3G11990 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 1.8e-48 196.4 175 56.0
BcaC09g48206 Brassica carinata HOM05D007923 ORTHO05D009651 3.1e-48 195.7 178 59.0
AT1G45190 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 6.9e-48 194.5 175 55.4
Carub.0008s0480 Capsella rubella HOM05D007923 ORTHO05D009651 1.9e-45 186.4 174 54.6
BolC1t05274H Brassica oleracea HOM05D007923 ORTHO05D009651 3.0e-43 179.1 162 59.3
Thhalv10022160m.g Eutrema salsugineum HOM05D007923 ORTHO05D009651 8.7e-43 177.6 178 55.6
BraA01t04147Z Brassica rapa HOM05D007923 ORTHO05D009651 1.5e-42 176.8 162 58.0
C06p22200 Brassica napus HOM05D007923 ORTHO05D009651 7.1e-37 157.9 165 55.2
CARHR179580 Cardamine hirsuta HOM05D007923 ORTHO05D009651 1.2e-36 157.1 169 49.1
BolC6t37406H Brassica oleracea HOM05D007923 ORTHO05D009651 1.0e-35 154.1 165 55.2
AL1G53940 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 1.8e-35 153.3 175 47.4
AL9U10560 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 4.3e-34 148.7 178 48.9
Carub.0006s2829 Capsella rubella HOM05D007923 ORTHO05D009651 4.3e-34 148.7 176 46.0
AT1G47450 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 1.4e-32 143.7 176 46.6
AT5G35405 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 9.0e-32 141.0 174 48.3
AT4G13261 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 1.5e-31 140.2 174 48.3
BcaB04g20407 Brassica carinata HOM05D007923 ORTHO05D009651 4.5e-31 138.7 169 49.1
AT4G13263 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 1.3e-30 137.1 174 47.7
AT2G04037 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 1.4e-29 133.7 175 46.3
AL5G13880 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 1.9e-29 133.3 174 45.4
AL5G13890 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 1.9e-29 133.3 174 45.4
AL5G13870 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 5.5e-29 131.7 174 44.8
BcaC08g44686 Brassica carinata HOM05D007923 ORTHO05D009651 2.5e-26 122.9 88 65.9
AT2G04031 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 9.7e-26 120.9 174 42.0
AL5G13900 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 2.8e-25 119.4 218 37.6
AL5G13910 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 2.8e-25 119.4 157 43.9
AT2G04041 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 6.5e-22 108.2 174 39.7
BcaC09g48207 Brassica carinata HOM05D007923 ORTHO05D009651 3.2e-21 105.9 178 40.4
THA.LOC104799715 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 3.0e-19 99.4 134 37.3
BcaC08g44685 Brassica carinata HOM05D007923 ORTHO05D009651 1.1e-18 97.4 69 75.4
C05p55910 Brassica napus HOM05D007923 ORTHO05D009651 2.6e-18 96.3 67 74.6
BolC5t34259H Brassica oleracea HOM05D007923 ORTHO05D009651 2.6e-18 96.3 67 74.6
THA.LOC104810160 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 1.4e-16 90.5 138 36.2
BcaC05g29303 Brassica carinata HOM05D007923 ORTHO05D009651 5.3e-16 88.6 50 92.0
C05p55900 Brassica napus HOM05D007923 ORTHO05D009651 9.1e-16 87.8 62 66.1
Carub.0001s4211 Capsella rubella HOM05D007923 ORTHO05D009651 3.4e-15 85.9 162 32.1
CARHR103140 Cardamine hirsuta HOM05D007923 ORTHO05D009651 3.2e-13 79.3 164 31.7
Thhalv10012072m.g Eutrema salsugineum HOM05D007923 ORTHO05D009651 5.5e-13 78.6 110 35.5
Sp1g39520 Schrenkiella parvula HOM05D007923 ORTHO05D009651 5.5e-13 78.6 111 33.3
AT1G52970 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 4.7e-12 75.5 123 30.9
AL1G61300 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 8.0e-12 74.7 162 29.0
CARHR043170 Cardamine hirsuta HOM05D007923 ORTHO05D009651 1.4e-11 73.9 162 28.4
COL.COLO4_10003 Corchorus olitorius HOM05D007923 ORTHO05D009651 6.3e-09 65.1 162 25.9
THA.LOC104817628 Tarenaya hassleriana HOM05D007923 ORTHO05D009976 5.0e-06 55.5 153 30.1
THA.LOC104813239 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 6.5e-06 55.1 104 32.7


User provided reference genes

Program Settings