Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g29296 Brassica carinata HOM05D004031 ORTHO05D006678 0.0e+00 1425.6 733 100.0
C05p55790 Brassica napus HOM05D004031 ORTHO05D006678 0.0e+00 1425.6 733 100.0
BolC5t34246H Brassica oleracea HOM05D004031 ORTHO05D006678 0.0e+00 1318.9 679 100.0
BcaC01g04064 Brassica carinata HOM05D004031 ORTHO05D006678 8.7e-307 1056.6 765 77.0
BcaB04g18697 Brassica carinata HOM05D004031 ORTHO05D006678 5.7e-306 1053.9 763 76.9
C03p45440 Brassica napus HOM05D004031 ORTHO05D006678 3.0e-299 1031.6 765 75.4
Sp3g10240 Schrenkiella parvula HOM05D004031 ORTHO05D006678 9.7e-298 1026.5 684 81.4
BolC3t16811H Brassica oleracea HOM05D004031 ORTHO05D006678 1.3e-294 1016.1 784 72.7
AT3G12010 Arabidopsis thaliana HOM05D004031 ORTHO05D006678 8.5e-286 986.9 688 78.5
Carub.0003s1135 Capsella rubella HOM05D004031 ORTHO05D006678 4.0e-283 978.0 688 77.9
CARHR086570 Cardamine hirsuta HOM05D004031 ORTHO05D006678 1.3e-273 946.4 683 77.3
BraA03t12904Z Brassica rapa HOM05D004031 ORTHO05D006678 1.4e-264 916.4 775 68.8
A03p37440 Brassica napus HOM05D004031 ORTHO05D006678 2.3e-259 899.0 694 73.2
Aa31LG3G5440 Aethionema arabicum HOM05D004031 ORTHO05D006678 5.7e-258 894.4 696 70.5
THA.LOC104799283 Tarenaya hassleriana HOM05D004031 ORTHO05D006678 4.4e-234 815.1 703 65.3
AL3G23620 Arabidopsis lyrata HOM05D004031 ORTHO05D006678 6.4e-217 758.1 545 78.0
Dinv16349 Davidia involucrata HOM05D004031 ORTHO05D006678 1.3e-212 743.8 763 56.2
Cfa020139 Carpinus fangiana HOM05D004031 ORTHO05D006678 1.4e-208 730.3 837 51.9
Ciclev10013737m.g Citrus clementina HOM05D004031 ORTHO05D006678 2.8e-204 716.1 818 51.8
vmacro22628 Vaccinium macrocarpon HOM05D004031 ORTHO05D006678 1.4e-200 703.7 886 48.1
Sabra06G0149700 Salix brachista HOM05D004031 ORTHO05D006678 7.9e-199 698.0 836 48.8
Thecc.05G175900 Theobroma cacao HOM05D004031 ORTHO05D006678 6.7e-198 694.9 762 53.1
Potri.016G060500 Populus trichocarpa HOM05D004031 ORTHO05D006678 1.3e-196 690.6 759 52.6
Gohir.A01G137300 Gossypium hirsutum HOM05D004031 ORTHO05D006678 4.1e-195 685.6 751 52.5
FAN05G0520 Fragaria x ananassa HOM05D004031 ORTHO05D006678 1.5e-194 683.7 896 47.9
Atru.chr8.1164 Acer truncatum HOM05D004031 ORTHO05D006678 2.6e-194 682.9 742 54.3
Potri.006G195000 Populus trichocarpa HOM05D004031 ORTHO05D006678 2.6e-194 682.9 706 54.1
Gohir.D01G124700 Gossypium hirsutum HOM05D004031 ORTHO05D006678 4.5e-194 682.2 751 52.5
Gorai.002G155200 Gossypium raimondii HOM05D004031 ORTHO05D006678 7.6e-194 681.4 747 52.9
GSVIVG01033461001 Vitis vinifera HOM05D004031 ORTHO05D006678 2.2e-193 679.9 703 54.9
RcHm_v2.0_Chr3g0479121 Rosa chinensis HOM05D004031 ORTHO05D006678 2.9e-193 679.5 753 52.5
Manes.09G038300 Manihot esculenta HOM05D004031 ORTHO05D006678 3.0e-190 669.5 765 50.5
CiPaw.10G024900 Carya illinoinensis HOM05D004031 ORTHO05D006678 1.5e-189 667.2 771 50.7
Lalb_Chr15g0079131 Lupinus albus HOM05D004031 ORTHO05D006678 7.4e-189 664.8 738 51.8
FvH4_6g21770 Fragaria vesca HOM05D004031 ORTHO05D006678 1.6e-188 663.7 746 52.7
Prupe.7G082700 Prunus persica HOM05D004031 ORTHO05D006678 6.3e-188 661.8 764 51.0
Hma1.2p1_0124F.1_g058320 Hydrangea macrophylla HOM05D004031 ORTHO05D006678 1.1e-187 661.0 729 52.7
Glyma.19G150400 Glycine max HOM05D004031 ORTHO05D006678 1.4e-187 660.6 764 49.7
Nitab4.5_0007281g0010 Nicotiana tabacum HOM05D004031 ORTHO05D006678 1.4e-187 660.6 851 47.4
Actinidia32416 Actinidia chinensis HOM05D004031 ORTHO05D006678 1.8e-187 660.2 807 48.9
CiPaw.09G027800 Carya illinoinensis HOM05D004031 ORTHO05D006678 4.1e-187 659.1 759 51.1
arahy.Tifrunner.gnm1.ann1.YX753W Arachis hypogaea HOM05D004031 ORTHO05D006678 6.9e-187 658.3 742 50.7
Medtr7g093740 Medicago truncatula HOM05D004031 ORTHO05D006678 6.9e-187 658.3 739 51.4
MD14G1053000 Malus domestica HOM05D004031 ORTHO05D006678 1.3e-185 654.1 769 50.2
PGR142G3960 Punica granatum HOM05D004031 ORTHO05D006678 1.3e-185 654.1 758 50.1
FAN09G1850 Fragaria x ananassa HOM05D004031 ORTHO05D006678 2.9e-185 652.9 773 50.7
Phvul.001G144700 Phaseolus vulgaris HOM05D004031 ORTHO05D006678 2.9e-185 652.9 727 51.3
Sabra16G0063400 Salix brachista HOM05D004031 ORTHO05D006678 5.0e-185 652.1 745 50.7
TPR.G13372 Trifolium pratense HOM05D004031 ORTHO05D006678 5.0e-185 652.1 735 51.0
CANSAT64G2464 Cannabis sativa HOM05D004031 ORTHO05D006678 2.5e-184 649.8 763 49.5
Glyma.03G147000 Glycine max HOM05D004031 ORTHO05D006678 4.2e-184 649.0 745 50.2
Eucgr.K01855 Eucalyptus grandis HOM05D004031 ORTHO05D006678 9.4e-184 647.9 758 49.5
Lj1g0024200 Lotus japonicus HOM05D004031 ORTHO05D006678 9.4e-184 647.9 741 50.2
arahy.Tifrunner.gnm1.ann1.4B2YIP Arachis hypogaea HOM05D004031 ORTHO05D006678 1.6e-183 647.1 769 48.9
MD12G1054100 Malus domestica HOM05D004031 ORTHO05D006678 3.6e-183 646.0 768 49.9
TAR623G1150 Trochodendron aralioides HOM05D004031 ORTHO05D006678 7.9e-183 644.8 791 48.5
FAN02G1852 Fragaria x ananassa HOM05D004031 ORTHO05D006678 6.7e-182 641.7 814 48.6
TWI74G0357 Tripterygium wilfordii HOM05D004031 ORTHO05D006678 8.8e-182 641.3 754 48.8
Ca_08544_v3 Cicer arietinum L. HOM05D004031 ORTHO05D006678 1.5e-181 640.6 745 50.3
Aqoxy1G00041 Aquilegia oxysepala HOM05D004031 ORTHO05D006678 2.0e-181 640.2 718 51.3
Psat3g066880 Pisum sativum HOM05D004031 ORTHO05D006678 3.3e-181 639.4 738 50.4
Dinv24047 Davidia involucrata HOM05D004031 ORTHO05D006678 8.2e-180 634.8 742 52.2
Sc13g0002440 Simmondsia chinensis HOM05D004031 ORTHO05D006678 4.1e-179 632.5 741 49.4
CSS0004189 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 6.9e-179 631.7 764 48.8
MELO3C009604.2 Cucumis melo HOM05D004031 ORTHO05D006678 9.1e-179 631.3 739 50.5
Aa31LG3G5500 Aethionema arabicum HOM05D004031 ORTHO05D006678 2.6e-178 629.8 461 73.1
Thhalv10020623m.g Eutrema salsugineum HOM05D004031 ORTHO05D006678 4.5e-178 629.0 480 74.2
HanXRQChr13g0398361 Helianthus annuus HOM05D004031 ORTHO05D006678 4.5e-178 629.0 744 50.0
Sed0017241 Sechium edule HOM05D004031 ORTHO05D006678 1.7e-177 627.1 743 49.4
Oeu057586.3 Olea europaea HOM05D004031 ORTHO05D006678 2.2e-177 626.7 763 47.8
AUR62012010 Chenopodium quinoa HOM05D004031 ORTHO05D006678 5.0e-177 625.5 734 49.0
EL10Ac3g06876 Beta vulgaris HOM05D004031 ORTHO05D006678 2.5e-176 623.2 753 47.9
Sopen03g011490 Solanum pennellii HOM05D004031 ORTHO05D006678 1.6e-175 620.5 763 48.2
ECA233G4423 Erigeron canadensis HOM05D004031 ORTHO05D006678 2.3e-174 616.7 744 48.1
Migut.J01861 Erythranthe guttata HOM05D004031 ORTHO05D006678 3.9e-174 615.9 709 49.9
AUR62015326 Chenopodium quinoa HOM05D004031 ORTHO05D006678 5.2e-174 615.5 773 47.0
VMungo1383G1586 Vigna mungo HOM05D004031 ORTHO05D006678 1.1e-173 614.4 690 51.2
CAN.G454.1 Capsicum annuum HOM05D004031 ORTHO05D006678 2.0e-173 613.6 762 48.8
Rhsim03G0003600 Rhododendron simsii HOM05D004031 ORTHO05D006678 9.7e-173 611.3 782 47.6
MSTRG.19923 Avicennia marina HOM05D004031 ORTHO05D006678 4.8e-172 609.0 750 48.1
Lsat_1_v5_gn_6_36500 Lactuca sativa HOM05D004031 ORTHO05D006678 1.8e-171 607.1 702 50.6
ATR0598G228 Amborella trichopoda HOM05D004031 ORTHO05D006678 7.0e-171 605.1 824 44.1
Nn7g35952 Nelumbo nucifera HOM05D004031 ORTHO05D006678 1.3e-169 600.9 798 46.5
Cc06_g15550 Coffea canephora HOM05D004031 ORTHO05D006678 1.7e-169 600.5 765 46.9
SGA_v2.0_scaffold105G30510 Striga asiatica HOM05D004031 ORTHO05D006678 1.9e-168 597.0 715 48.4
HPP92_024784 Vanilla planifolia HOM05D004031 ORTHO05D006678 3.2e-168 596.3 851 43.4
DCAR_009690 Daucus carota HOM05D004031 ORTHO05D006678 6.7e-166 588.6 780 46.2
MBI13_g29636_MAGBIO Magnolia biondii HOM05D004031 ORTHO05D006678 6.7e-166 588.6 780 46.0
PSO339G3947 Papaver somniferum HOM05D004031 ORTHO05D006678 1.5e-160 570.9 767 45.5
PSO384G3799 Papaver somniferum HOM05D004031 ORTHO05D006678 5.5e-160 568.9 765 45.5
Lj1A1132T32 Lonicera japonica HOM05D004031 ORTHO05D006678 8.0e-159 565.1 788 43.7
SalBow6G5892 Salvia bowleyana HOM05D004031 ORTHO05D006678 4.0e-158 562.8 777 44.3
Os10g0400900 Oryza sativa ssp. japonica HOM05D004031 ORTHO05D006678 5.0e-153 545.8 726 43.4
Lju124A22T15 Lonicera japonica HOM05D004031 ORTHO05D006678 1.0e-145 521.5 739 43.2
FAN14G1892 Fragaria x ananassa HOM05D004031 ORTHO05D006678 6.6e-145 518.8 646 49.4
Haze_20030 Corylus avellana HOM05D004031 ORTHO05D006678 2.3e-142 510.4 925 39.5
Sed0010020 Sechium edule HOM05D004031 ORTHO05D006678 6.4e-140 502.3 725 43.9
CDE05G0445 Ceratophyllum demersum HOM05D004031 ORTHO05D006678 2.7e-138 496.9 714 42.6
CsaV3_3G038610 Cucumis sativus L. HOM05D004031 ORTHO05D006678 1.7e-137 494.2 665 45.1
Hma1.2p1_0124F.1_g058310 Hydrangea macrophylla HOM05D004031 ORTHO05D006678 8.9e-134 481.9 456 57.9
Solyc03g053010.4 Solanum lycopersicum HOM05D004031 ORTHO05D006678 2.5e-128 463.8 622 46.5
Pp3c6_28540 Physcomitrium patens HOM05D004031 ORTHO05D006678 5.8e-125 452.6 756 37.2
SMO143G0277 Selaginella moellendorffii HOM05D004031 ORTHO05D006678 1.1e-123 448.4 698 39.1
unitig_21.g20577 Utricularia gibba HOM05D004031 ORTHO05D006678 3.2e-123 446.8 680 42.4
Mapoly0005s0167 Marchantia polymorpha HOM05D004031 ORTHO05D006678 2.5e-120 437.2 831 34.4
ClCG10G017700 Citrullus lanatus HOM05D004031 ORTHO05D006678 7.6e-117 425.6 419 55.4
Zm00001eb048600 Zea mays HOM05D004031 ORTHO05D006678 4.3e-112 409.8 592 40.9
QL07p024699 Quercus lobata HOM05D004031 ORTHO05D006678 4.8e-103 379.8 488 49.2
Peaxi162Scf00463g00518 Petunia axillaris HOM05D004031 ORTHO05D006678 5.3e-102 376.3 608 41.8
Nitab4.5_0000009g0250 Nicotiana tabacum HOM05D004031 ORTHO05D006678 2.4e-94 350.9 486 46.1
QL07p024684 Quercus lobata HOM05D004031 ORTHO05D006678 3.5e-82 310.5 259 60.6
SHI31751 Sapria himalayana HOM05D004031 ORTHO05D006678 1.5e-77 295.0 464 43.1
SEGI_16646 Sequoiadendron giganteum HOM05D004031 ORTHO05D006678 8.8e-73 279.3 599 33.9
Psat7g023080 Pisum sativum HOM05D004031 ORTHO05D006678 2.9e-60 237.7 368 41.0
Cpa.g.sc85.42 Carica papaya HOM05D004031 ORTHO05D006678 3.2e-59 234.2 203 59.6
Nitab4.5_0000009g0260 Nicotiana tabacum HOM05D004031 ORTHO05D011186 7.2e-51 206.5 225 50.7
Cpa.g.c40176 Carica papaya HOM05D004031 ORTHO05D006678 1.3e-44 185.7 208 54.8
TAR623G0223 Trochodendron aralioides HOM05D004031 ORTHO05D006678 1.2e-37 162.5 158 55.7
CSS0030127 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 2.7e-37 161.4 152 54.6
Peaxi162Scf00463g00519 Petunia axillaris HOM05D004031 ORTHO05D006678 1.7e-36 158.7 150 52.7
Solyc03g053000.4 Solanum lycopersicum HOM05D004031 ORTHO05D006678 1.7e-36 158.7 150 54.0
SHI31745 Sapria himalayana HOM05D004031 ORTHO05D006678 1.4e-33 149.1 152 50.0
C05p55850 Brassica napus HOM05D004031 ORTHO05D006678 2.3e-33 148.3 114 67.5
BolC5t34254H Brassica oleracea HOM05D004031 ORTHO05D006678 2.3e-33 148.3 109 69.7
BcaB06g25555 Brassica carinata HOM05D004031 ORTHO05D006678 8.3e-31 139.8 86 82.6
CSS0049250 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 7.8e-29 133.3 108 60.2
Aa31LG3G5510 Aethionema arabicum HOM05D004031 ORTHO05D006678 8.6e-28 129.8 76 84.2
CSS0030002 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 3.6e-26 124.4 113 55.8
CBR_g32657 Chara braunii HOM05D004031 ORTHO05D006678 8.3e-23 113.2 208 35.6
CBR_g44463 Chara braunii HOM05D000019 ORTHO05D000002 3.0e-20 104.8 167 36.5
Psat4g142720 Pisum sativum HOM05D003784 ORTHO05D004345 1.1e-19 102.8 106 52.8
Aa31LG3G5490 Aethionema arabicum HOM05D004031 ORTHO05D011186 1.5e-16 92.4 58 77.6
PRCOL_00003629 Prasinoderma coloniale HOM05D004031 ORTHO05D006678 1.5e-16 92.4 695 22.9
Carub.0003s1134 Capsella rubella HOM05D004031 ORTHO05D011186 2.0e-16 92.0 58 81.0
Nn3g18463 Nelumbo nucifera HOM05D004031 ORTHO05D006678 3.4e-16 91.3 75 58.7
A03p37430 Brassica napus HOM05D004031 ORTHO05D011186 4.4e-16 90.9 59 79.7
Aa31LG3G5450 Aethionema arabicum HOM05D004031 ORTHO05D011186 5.8e-16 90.5 58 75.9
CBR_g32659 Chara braunii HOM05D001409 ORTHO05D001511 5.4e-14 84.0 113 40.7
Psat4g142800 Pisum sativum HOM05D003784 ORTHO05D004345 2.1e-13 82.0 93 48.4
GSVIVG01033459001 Vitis vinifera HOM05D004031 ORTHO05D011186 2.3e-12 78.6 57 70.2
Manes.09G038400 Manihot esculenta HOM05D004031 ORTHO05D011186 1.9e-11 75.5 58 63.8
Potri.016G060550 Populus trichocarpa HOM05D004031 ORTHO05D011186 2.5e-11 75.1 58 62.1
Sed0024429 Sechium edule HOM05D004031 ORTHO05D011186 3.3e-11 74.7 58 62.1
CDE05G3199 Ceratophyllum demersum HOM05D004031 ORTHO05D011186 5.6e-11 73.9 58 63.8
MELO3C009606.2 Cucumis melo HOM05D004031 ORTHO05D011186 7.3e-11 73.6 58 58.6
Migut.J01860 Erythranthe guttata HOM05D004031 ORTHO05D011186 7.3e-11 73.6 57 61.4
Eucgr.K01857 Eucalyptus grandis HOM05D004031 ORTHO05D011186 1.2e-10 72.8 58 65.5
Thecc.05G176000 Theobroma cacao HOM05D004031 ORTHO05D011186 1.6e-10 72.4 58 63.8
Gohir.A01G137400 Gossypium hirsutum HOM05D004031 ORTHO05D011186 2.1e-10 72.0 58 63.8
Glyma.19G150500 Glycine max HOM05D004031 ORTHO05D011186 2.8e-10 71.6 57 64.9
Gohir.D01G124600 Gossypium hirsutum HOM05D004031 ORTHO05D011186 3.6e-10 71.2 58 63.8
MD12G1054200 Malus domestica HOM05D004031 ORTHO05D011186 3.6e-10 71.2 57 61.4
Nn7g35951 Nelumbo nucifera HOM05D004031 ORTHO05D011186 3.6e-10 71.2 56 60.7
Prupe.7G082600 Prunus persica HOM05D004031 ORTHO05D011186 3.6e-10 71.2 57 61.4
RcHm_v2.0_Chr3g0479131 Rosa chinensis HOM05D004031 ORTHO05D011186 3.6e-10 71.2 57 63.2
BolC5t34247H Brassica oleracea HOM05D004031 ORTHO05D006678 6.2e-10 70.5 49 71.4
Phvul.001G144800 Phaseolus vulgaris HOM05D004031 ORTHO05D011186 8.1e-10 70.1 57 63.2
Hma1.2p1_0124F.1_g058300 Hydrangea macrophylla HOM05D004031 ORTHO05D011186 1.8e-09 68.9 58 60.3
CSS0013106 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D011186 2.3e-09 68.6 58 58.6
Lj1g0020490 Lotus japonicus HOM05D004031 ORTHO05D011186 2.3e-09 68.6 57 61.4
Lalb_Chr15g0079141 Lupinus albus HOM05D004031 ORTHO05D011186 2.3e-09 68.6 57 61.4
CiPaw.09G027900 Carya illinoinensis HOM05D004031 ORTHO05D011186 3.1e-09 68.2 56 60.7
Nn7g36859 Nelumbo nucifera HOM05D004031 ORTHO05D011186 3.1e-09 68.2 56 60.7
Duzib128G0401 Durio zibethinus HOM05D004031 ORTHO05D011186 5.2e-09 67.4 58 60.3
Medtr7g093770 Medicago truncatula HOM05D004031 ORTHO05D011186 6.8e-09 67.0 51 60.8
SHI31749 Sapria himalayana HOM05D003430 ORTHO05D004809 6.8e-09 67.0 60 55.0
Cc06_g15560 Coffea canephora HOM05D004031 ORTHO05D011186 4.4e-08 64.3 59 55.9
Glyma.03G147100 Glycine max HOM05D004031 ORTHO05D011186 9.9e-08 63.2 53 64.2
MCO13G277 Micromonas commoda HOM05D004031 ORTHO05D006678 3.7e-07 61.2 486 22.8
Nn2g13219 Nelumbo nucifera HOM05D004031 ORTHO05D006678 1.9e-06 58.9 44 59.1
Hund06156 Selenicereus undatus HOM05D000159 ORTHO05D011186 1.9e-06 58.9 38 65.8
Sed0004834 Sechium edule HOM05D004031 ORTHO05D011186 2.4e-06 58.5 66 48.5
SEGI_01182 Sequoiadendron giganteum HOM05D004031 ORTHO05D011186 3.2e-06 58.2 35 71.4
Hund07844 Selenicereus undatus HOM05D004031 ORTHO05D006678 5.4e-06 57.4 62 48.4


User provided reference genes

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