Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g29251 Brassica carinata HOM05D007026 ORTHO05D008493 1.7e-88 329.3 171 100.0
BcaC01g04025 Brassica carinata HOM05D007026 ORTHO05D008493 1.3e-56 223.4 127 89.8
C03p45790 Brassica napus HOM05D007026 ORTHO05D008493 1.3e-56 223.4 127 89.8
BolC3t16854H Brassica oleracea HOM05D007026 ORTHO05D008493 1.3e-56 223.4 127 89.8
BraA05t22486Z Brassica rapa HOM05D007026 ORTHO05D008493 2.3e-56 222.6 128 92.2
BolC5t34196H Brassica oleracea HOM05D007026 ORTHO05D008493 3.0e-56 222.2 118 98.3
A03p37740 Brassica napus HOM05D007026 ORTHO05D008493 3.3e-55 218.8 127 87.4
BraA03t12929Z Brassica rapa HOM05D007026 ORTHO05D008493 3.3e-55 218.8 127 87.4
A05p36850 Brassica napus HOM05D007026 ORTHO05D008493 4.3e-55 218.4 128 90.6
Sp3g10790 Schrenkiella parvula HOM05D007026 ORTHO05D008493 1.2e-54 216.9 127 85.8
BcaB04g18713 Brassica carinata HOM05D007026 ORTHO05D008493 3.6e-54 215.3 127 85.0
BcaB06g25527 Brassica carinata HOM05D007026 ORTHO05D008493 2.3e-53 212.6 128 87.5
Thhalv10021417m.g Eutrema salsugineum HOM05D007026 ORTHO05D008493 2.3e-53 212.6 127 84.3
CARHR087160 Cardamine hirsuta HOM05D007026 ORTHO05D008493 1.2e-49 200.3 127 80.3
AL3G24320 Arabidopsis lyrata HOM05D007026 ORTHO05D008493 2.1e-49 199.5 127 81.9
Carub.0003s1200 Capsella rubella HOM05D007026 ORTHO05D008493 1.0e-48 197.2 167 66.5
AT3G12650 Arabidopsis thaliana HOM05D007026 ORTHO05D008493 2.3e-48 196.1 127 80.3
Aa31LG3G20 Aethionema arabicum HOM05D007026 ORTHO05D008493 1.9e-47 193.0 127 78.7
THA.LOC104826673 Tarenaya hassleriana HOM05D007026 ORTHO05D008493 6.0e-41 171.4 124 71.8
C05p55310 Brassica napus HOM05D007026 ORTHO05D008493 9.6e-39 164.1 171 59.6
Cpa.g.sc245.8 Carica papaya HOM05D007026 ORTHO05D008493 5.3e-37 158.3 124 66.9
Sabra09G0047000 Salix brachista HOM05D007026 ORTHO05D008493 1.3e-35 153.7 125 64.8
Potri.009G063700 Populus trichocarpa HOM05D007026 ORTHO05D008493 2.2e-35 152.9 125 64.8
PGR044G0728 Punica granatum HOM05D007026 ORTHO05D008493 2.2e-35 152.9 125 64.0
QL04p005492 Quercus lobata HOM05D007026 ORTHO05D008493 2.2e-35 152.9 125 64.0
MELO3C023538.2 Cucumis melo HOM05D007026 ORTHO05D008493 3.8e-35 152.1 125 64.0
Medtr8g036520 Medicago truncatula HOM05D007026 ORTHO05D008493 3.8e-35 152.1 125 65.6
CSS0028033 Camellia sinensis var. sinensis HOM05D007026 ORTHO05D008493 4.9e-35 151.8 125 64.8
Cfa010744 Carpinus fangiana HOM05D007026 ORTHO05D008493 4.9e-35 151.8 124 63.7
Psat4g148320 Pisum sativum HOM05D007026 ORTHO05D008493 4.9e-35 151.8 125 64.0
CsaV3_7G031200 Cucumis sativus L. HOM05D007026 ORTHO05D008493 6.4e-35 151.4 125 63.2
ClCG09G004280 Citrullus lanatus HOM05D007026 ORTHO05D008493 8.4e-35 151.0 125 64.0
Ciclev10032288m.g Citrus clementina HOM05D007026 ORTHO05D008493 1.4e-34 150.2 124 65.3
Prupe.2G010600 Prunus persica HOM05D007026 ORTHO05D008493 1.4e-34 150.2 125 64.0
Thecc.01G412700 Theobroma cacao HOM05D007026 ORTHO05D008493 1.9e-34 149.8 125 62.4
BcaB08g35591 Brassica carinata HOM05D007026 ORTHO05D008493 3.2e-34 149.1 128 65.6
MD07G1007900 Malus domestica HOM05D007026 ORTHO05D008493 4.2e-34 148.7 125 64.0
Atru.chr11.2644 Acer truncatum HOM05D007026 ORTHO05D008493 1.2e-33 147.1 124 63.7
TWI09G0295 Tripterygium wilfordii HOM05D007026 ORTHO05D008493 1.6e-33 146.7 169 53.8
MD02G1314200 Malus domestica HOM05D007026 ORTHO05D008493 2.1e-33 146.4 125 64.0
RcHm_v2.0_Chr1g0315651 Rosa chinensis HOM05D007026 ORTHO05D008493 2.1e-33 146.4 123 63.4
Potri.001G269000 Populus trichocarpa HOM05D007026 ORTHO05D008493 3.5e-33 145.6 125 60.8
Actinidia21558 Actinidia chinensis HOM05D007026 ORTHO05D008493 6.0e-33 144.8 154 53.9
FAN03G2284 Fragaria x ananassa HOM05D007026 ORTHO05D008493 6.0e-33 144.8 121 62.0
Lalb_Chr03g0033971 Lupinus albus HOM05D007026 ORTHO05D008493 6.0e-33 144.8 118 64.4
TAR623G1735 Trochodendron aralioides HOM05D007026 ORTHO05D008493 6.0e-33 144.8 125 61.6
Manes.10G145400 Manihot esculenta HOM05D007026 ORTHO05D008493 1.0e-32 144.1 125 62.4
TAR623G0027 Trochodendron aralioides HOM05D007026 ORTHO05D008493 1.0e-32 144.1 125 61.6
FAN06G1399 Fragaria x ananassa HOM05D007026 ORTHO05D008493 1.3e-32 143.7 121 62.0
Hma1.2p1_0293F.1_g116330 Hydrangea macrophylla HOM05D007026 ORTHO05D008493 1.7e-32 143.3 125 61.6
Nn2g15423 Nelumbo nucifera HOM05D007026 ORTHO05D008493 2.3e-32 142.9 125 58.4
CANSAT80G1756 Cannabis sativa HOM05D007026 ORTHO05D008493 1.1e-31 140.6 159 51.6
FAN10G3680 Fragaria x ananassa HOM05D007026 ORTHO05D008493 1.1e-31 140.6 121 61.2
MSTRG.28077 Avicennia marina HOM05D007026 ORTHO05D008493 1.5e-31 140.2 125 60.8
Rhsim01G0130400 Rhododendron simsii HOM05D007026 ORTHO05D008493 1.9e-31 139.8 125 60.8
Sc11g0009270 Simmondsia chinensis HOM05D007026 ORTHO05D008493 1.9e-31 139.8 124 57.3
Lsat_1_v5_gn_1_108360 Lactuca sativa HOM05D007026 ORTHO05D008493 2.5e-31 139.4 124 59.7
Gohir.D08G166400 Gossypium hirsutum HOM05D007026 ORTHO05D008493 4.3e-31 138.7 127 59.8
Gorai.004G173800 Gossypium raimondii HOM05D007026 ORTHO05D008493 4.3e-31 138.7 127 59.8
RcHm_v2.0_Chr1g0315191 Rosa chinensis HOM05D007026 ORTHO05D008493 4.3e-31 138.7 114 64.0
Duzib268G1513 Durio zibethinus HOM05D007026 ORTHO05D008493 9.6e-31 137.5 125 56.8
Glyma.13G204000 Glycine max HOM05D007026 ORTHO05D008493 1.3e-30 137.1 120 61.7
RcHm_v2.0_Chr1g0315371 Rosa chinensis HOM05D007026 ORTHO05D008493 1.3e-30 137.1 114 63.2
Haze_03229 Corylus avellana HOM05D007026 ORTHO05D008493 1.6e-30 136.7 110 63.6
VMungo1127G0427 Vigna mungo HOM05D007026 ORTHO05D008493 1.6e-30 136.7 117 60.7
arahy.Tifrunner.gnm1.ann1.VL74DI Arachis hypogaea HOM05D007026 ORTHO05D008493 2.1e-30 136.3 125 56.8
Migut.N01474 Erythranthe guttata HOM05D007026 ORTHO05D008493 2.1e-30 136.3 122 60.7
Lj3g0000564 Lotus japonicus HOM05D007026 ORTHO05D008493 2.1e-30 136.3 125 58.4
RcHm_v2.0_Chr1g0315521 Rosa chinensis HOM05D007026 ORTHO05D008493 3.6e-30 135.6 114 63.2
vmacro21182 Vaccinium macrocarpon HOM05D007026 ORTHO05D008493 4.8e-30 135.2 161 50.3
Cc02_g27730 Coffea canephora HOM05D007026 ORTHO05D008493 8.1e-30 134.4 158 53.2
DCAR_029660 Daucus carota HOM05D007026 ORTHO05D008493 1.4e-29 133.7 124 56.5
Lj7P569T60 Lonicera japonica HOM05D007026 ORTHO05D008493 1.8e-29 133.3 125 57.6
COL.COLO4_23920 Corchorus olitorius HOM05D007026 ORTHO05D008493 5.3e-29 131.7 123 56.1
Phvul.011G212500 Phaseolus vulgaris HOM05D007026 ORTHO05D008493 9.0e-29 131.0 162 51.2
RcHm_v2.0_Chr1g0315011 Rosa chinensis HOM05D007026 ORTHO05D008493 9.0e-29 131.0 114 63.2
ECA248G3415 Erigeron canadensis HOM05D007026 ORTHO05D008493 1.2e-28 130.6 155 51.0
unitig_0.g1578 Utricularia gibba HOM05D007026 ORTHO05D008493 1.2e-28 130.6 125 54.4
Migut.A00762 Erythranthe guttata HOM05D007026 ORTHO05D008493 2.0e-28 129.8 151 53.0
Sed0012425 Sechium edule HOM05D007026 ORTHO05D008493 2.6e-28 129.4 124 57.3
SGA_v2.0_scaffold4G02258 Striga asiatica HOM05D007026 ORTHO05D008493 3.4e-28 129.0 163 50.9
Peaxi162Scf00428g00077 Petunia axillaris HOM05D007026 ORTHO05D008493 7.6e-28 127.9 118 58.5
PGSC0003DMG400024551 Solanum tuberosum HOM05D007026 ORTHO05D008493 1.3e-27 127.1 125 55.2
Sopen03g034460 Solanum pennellii HOM05D007026 ORTHO05D008493 2.2e-27 126.3 125 54.4
HanXRQChr06g0185391 Helianthus annuus HOM05D007026 ORTHO05D008493 2.9e-27 125.9 124 54.0
Solyc03g115460.3 Solanum lycopersicum HOM05D007026 ORTHO05D008493 4.9e-27 125.2 125 53.6
Eucgr.J01262 Eucalyptus grandis HOM05D007026 ORTHO05D008493 1.4e-26 123.6 115 57.4
ATR0605G064 Amborella trichopoda HOM05D007026 ORTHO05D008493 2.4e-26 122.9 116 55.2
Nitab4.5_0002881g0080 Nicotiana tabacum HOM05D007026 ORTHO05D008493 1.2e-25 120.6 125 50.4
MBI01_g27619_MAGBIO Magnolia biondii HOM05D007026 ORTHO05D008493 7.9e-25 117.9 114 52.6
Aqoxy1G00217 Aquilegia oxysepala HOM05D007026 ORTHO05D008493 2.3e-24 116.3 173 44.5
SHI26926 Sapria himalayana HOM05D007026 ORTHO05D008493 3.9e-24 115.5 102 59.8
PSO339G4493 Papaver somniferum HOM05D007026 ORTHO05D008493 6.7e-24 114.8 124 48.4
Nitab4.5_0005198g0030 Nicotiana tabacum HOM05D007026 ORTHO05D008493 1.5e-23 113.6 100 58.0
HPP92_022795 Vanilla planifolia HOM05D007026 ORTHO05D008493 1.9e-23 113.2 122 48.4
Actinidia20675 Actinidia chinensis HOM05D007026 ORTHO05D008493 3.1e-21 105.9 81 64.2
Dinv09365 Davidia involucrata HOM05D007026 ORTHO05D008493 8.4e-19 97.8 82 58.5
Os02g0718000 Oryza sativa ssp. japonica HOM05D007026 ORTHO05D008493 1.2e-17 94.0 127 42.5
FvH4_7g00860 Fragaria vesca HOM05D007026 ORTHO05D008493 1.6e-17 93.6 80 58.8
Zm00001eb189290 Zea mays HOM05D007026 ORTHO05D008493 2.1e-17 93.2 123 43.1
EL10Ac2g04312 Beta vulgaris HOM05D007026 ORTHO05D008493 2.7e-17 92.8 118 43.2
Dinv43456 Davidia involucrata HOM05D007026 ORTHO05D008493 4.6e-17 92.0 80 56.2
AL7G43500 Arabidopsis lyrata HOM05D007026 ORTHO05D008493 6.0e-17 91.7 55 81.8
AUR62009374 Chenopodium quinoa HOM05D007026 ORTHO05D008493 1.8e-16 90.1 120 40.8
Gohir.A08G145400 Gossypium hirsutum HOM05D007026 ORTHO05D008493 2.4e-13 79.7 95 45.3
PSO384G4663 Papaver somniferum HOM05D007026 ORTHO05D008493 9.0e-13 77.8 83 47.0
Nitab4.5_0004511g0060 Nicotiana tabacum HOM05D007026 ORTHO05D008493 1.3e-11 73.9 67 55.2
Nitab4.5_0000052g0150 Nicotiana tabacum HOM05D007026 ORTHO05D008493 6.1e-09 65.1 86 46.5
Pp3c2_10070 Physcomitrium patens HOM05D007026 ORTHO05D008493 6.1e-09 65.1 118 36.4


User provided reference genes

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