Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g29150 Brassica carinata HOM05D006233 ORTHO05D007247 1.5e-56 222.6 115 100.0
BcaC05g29149 Brassica carinata HOM05D006233 ORTHO05D007247 1.1e-38 163.3 147 68.0
C05p53920 Brassica napus HOM05D006233 ORTHO05D007247 1.1e-38 163.3 147 68.0
BcaB06g25428 Brassica carinata HOM05D006233 ORTHO05D007247 6.0e-37 157.5 148 66.9
AL3G26050 Arabidopsis lyrata HOM05D006233 ORTHO05D007247 3.9e-36 154.8 149 65.8
BcaC01g03969 Brassica carinata HOM05D006233 ORTHO05D007247 3.9e-36 154.8 148 65.5
BolC3t16928H Brassica oleracea HOM05D006233 ORTHO05D007247 3.9e-36 154.8 148 65.5
C03p46650 Brassica napus HOM05D006233 ORTHO05D007247 5.1e-36 154.5 149 65.1
BcaB04g18809 Brassica carinata HOM05D006233 ORTHO05D007247 1.9e-35 152.5 148 66.2
A03p38490 Brassica napus HOM05D006233 ORTHO05D007247 5.6e-35 151.0 148 65.5
AT3G13882 Arabidopsis thaliana HOM05D006233 ORTHO05D007247 7.4e-35 150.6 149 63.8
BraA03t12999Z Brassica rapa HOM05D006233 ORTHO05D007247 9.6e-35 150.2 152 61.8
Thhalv10021711m.g Eutrema salsugineum HOM05D006233 ORTHO05D007247 1.6e-34 149.4 147 62.6
Carub.0003s1344 Capsella rubella HOM05D006233 ORTHO05D007247 2.8e-34 148.7 149 63.8
BraA03t13001Z Brassica rapa HOM05D006233 ORTHO05D007247 4.8e-34 147.9 149 64.4
Aa31LG8G1060 Aethionema arabicum HOM05D006233 ORTHO05D007247 6.2e-34 147.5 148 64.2
Sp3g12110 Schrenkiella parvula HOM05D006233 ORTHO05D007247 2.4e-33 145.6 149 64.4
CARHR088680 Cardamine hirsuta HOM05D006233 ORTHO05D007247 4.5e-32 141.4 151 60.9
THA.LOC104822640 Tarenaya hassleriana HOM05D006233 ORTHO05D007247 8.2e-26 120.6 170 49.4
A03p38520 Brassica napus HOM05D006233 ORTHO05D007247 1.1e-25 120.2 107 67.3
BraA05t22362Z Brassica rapa HOM05D006233 ORTHO05D007247 6.1e-21 104.4 172 46.5
Prupe.3G047000 Prunus persica HOM05D006233 ORTHO05D007247 8.7e-20 100.5 149 51.0
BolC5t34058H Brassica oleracea HOM05D006233 ORTHO05D007247 2.5e-19 99.0 153 47.7
Gohir.D06G199600 Gossypium hirsutum HOM05D006233 ORTHO05D007247 4.3e-19 98.2 145 51.0
Gohir.A06G191200 Gossypium hirsutum HOM05D006233 ORTHO05D007247 5.7e-19 97.8 145 51.0
Gorai.010G232600 Gossypium raimondii HOM05D006233 ORTHO05D007247 5.7e-19 97.8 145 51.0
Atru.chr1.3781 Acer truncatum HOM05D006233 ORTHO05D007247 2.2e-18 95.9 137 49.6
Thecc.06G113700 Theobroma cacao HOM05D006233 ORTHO05D007247 2.2e-18 95.9 145 50.3
Cpa.g.sc25.68 Carica papaya HOM05D006233 ORTHO05D007247 2.8e-18 95.5 146 47.3
MD17G1173900 Malus domestica HOM05D006233 ORTHO05D007247 2.8e-18 95.5 145 49.7
Manes.11G024800 Manihot esculenta HOM05D006233 ORTHO05D007247 6.3e-18 94.4 148 49.3
TWI38G0279 Tripterygium wilfordii HOM05D006233 ORTHO05D007247 8.2e-18 94.0 144 46.5
COL.COLO4_38606 Corchorus olitorius HOM05D006233 ORTHO05D007247 1.8e-17 92.8 147 46.3
RcHm_v2.0_Chr2g0143671 Rosa chinensis HOM05D006233 ORTHO05D007247 1.8e-17 92.8 148 46.6
CANSAT56G1839 Cannabis sativa HOM05D006233 ORTHO05D007247 2.4e-17 92.4 149 46.3
Ciclev10026736m.g Citrus clementina HOM05D006233 ORTHO05D007247 2.4e-17 92.4 139 49.6
FvH4_6g33800 Fragaria vesca HOM05D006233 ORTHO05D007247 3.1e-17 92.0 148 45.9
FAN14G4045 Fragaria x ananassa HOM05D006233 ORTHO05D007247 3.1e-17 92.0 148 45.9
Potri.003G041100 Populus trichocarpa HOM05D006233 ORTHO05D007247 4.1e-17 91.7 140 47.1
FAN09G3309 Fragaria x ananassa HOM05D006233 ORTHO05D007247 9.0e-17 90.5 148 45.3
Manes.04G140700 Manihot esculenta HOM05D006233 ORTHO05D007247 1.2e-16 90.1 145 48.3
TWI63G1789 Tripterygium wilfordii HOM05D006233 ORTHO05D007247 1.2e-16 90.1 147 46.9
MD09G1191200 Malus domestica HOM05D006233 ORTHO05D007247 1.5e-16 89.7 149 46.3
FAN05G2224 Fragaria x ananassa HOM05D006233 ORTHO05D007247 2.6e-16 89.0 151 47.0
arahy.Tifrunner.gnm1.ann1.LDN3BT Arachis hypogaea HOM05D006233 ORTHO05D007247 3.4e-16 88.6 141 46.1
Phvul.010G137600 Phaseolus vulgaris HOM05D006233 ORTHO05D007247 7.7e-16 87.4 136 49.3
AUR62038159 Chenopodium quinoa HOM05D006233 ORTHO05D007247 1.7e-15 86.3 159 41.5
Ca_23330_v3 Cicer arietinum L. HOM05D006233 ORTHO05D007247 3.8e-15 85.1 136 46.3
Actinidia26050 Actinidia chinensis HOM05D006233 ORTHO05D007247 5.0e-15 84.7 146 44.5
Actinidia39105 Actinidia chinensis HOM05D006233 ORTHO05D007247 5.0e-15 84.7 150 44.7
Cfa003566 Carpinus fangiana HOM05D006233 ORTHO05D007247 5.0e-15 84.7 150 44.0
Hund20828 Selenicereus undatus HOM05D006233 ORTHO05D007247 5.0e-15 84.7 166 40.4
AUR62009846 Chenopodium quinoa HOM05D006233 ORTHO05D007247 8.5e-15 84.0 156 41.7
Dinv37902 Davidia involucrata HOM05D006233 ORTHO05D007247 8.5e-15 84.0 137 48.2
Medtr8g017420 Medicago truncatula HOM05D006233 ORTHO05D007247 8.5e-15 84.0 135 45.2
CiPaw.01G223500 Carya illinoinensis HOM05D006233 ORTHO05D007247 1.1e-14 83.6 147 44.9
Lj5A43T71 Lonicera japonica HOM05D006233 ORTHO05D007247 1.1e-14 83.6 160 40.6
A05p35530 Brassica napus HOM05D006233 ORTHO05D007247 1.4e-14 83.2 45 91.1
CiPaw.02G138900 Carya illinoinensis HOM05D006233 ORTHO05D007247 3.2e-14 82.0 150 44.0
SGA_v2.0_scaffold4G02044 Striga asiatica HOM05D006233 ORTHO05D007247 5.5e-14 81.3 145 46.2
Hma1.2p1_1128F.1_g259780 Hydrangea macrophylla HOM05D006233 ORTHO05D007247 7.2e-14 80.9 152 44.1
EL10Ac7g16362 Beta vulgaris HOM05D006233 ORTHO05D007247 9.4e-14 80.5 160 40.6
Migut.D00962 Erythranthe guttata HOM05D006233 ORTHO05D007247 9.4e-14 80.5 155 41.3
Lj5g0016703 Lotus japonicus HOM05D006233 ORTHO05D007247 9.4e-14 80.5 149 45.6
GSVIVG01016799001 Vitis vinifera HOM05D006233 ORTHO05D007247 1.6e-13 79.7 148 41.9
Aqoxy7G01184 Aquilegia oxysepala HOM05D006233 ORTHO05D007247 2.1e-13 79.3 143 41.3
CDE03G0127 Ceratophyllum demersum HOM05D006233 ORTHO05D007247 2.7e-13 79.0 142 42.3
CsaV3_3G043640 Cucumis sativus L. HOM05D006233 ORTHO05D007247 3.6e-13 78.6 152 44.7
Dinv04018 Davidia involucrata HOM05D006233 ORTHO05D007247 3.6e-13 78.6 147 44.2
VMungo0331G0931 Vigna mungo HOM05D006233 ORTHO05D007247 3.6e-13 78.6 134 47.0
MSTRG.9502 Avicennia marina HOM05D006233 ORTHO05D007247 1.0e-12 77.0 150 41.3
Nitab4.5_0000255g0250 Nicotiana tabacum HOM05D006233 ORTHO05D007247 1.0e-12 77.0 142 44.4
Nitab4.5_0005918g0010 Nicotiana tabacum HOM05D006233 ORTHO05D007247 1.0e-12 77.0 142 44.4
MELO3C013069.2 Cucumis melo HOM05D006233 ORTHO05D007247 1.4e-12 76.6 100 53.0
Eucgr.F03142 Eucalyptus grandis HOM05D006233 ORTHO05D007247 2.3e-12 75.9 148 40.5
Nn6g35511 Nelumbo nucifera HOM05D006233 ORTHO05D007247 5.1e-12 74.7 142 40.1
PSO210G1065 Papaver somniferum HOM05D006233 ORTHO05D007247 5.1e-12 74.7 147 40.8
PGR119G1625 Punica granatum HOM05D006233 ORTHO05D007247 6.7e-12 74.3 152 40.8
Haze_15979 Corylus avellana HOM05D006233 ORTHO05D007247 1.5e-11 73.2 172 37.8
Glyma.08G191600 Glycine max HOM05D006233 ORTHO05D007247 2.0e-11 72.8 117 47.9
TPR.G3185 Trifolium pratense HOM05D006233 ORTHO05D007247 2.0e-11 72.8 135 43.0
Glyma.07G008600 Glycine max HOM05D006233 ORTHO05D007247 2.5e-11 72.4 130 43.8
Sed0001061 Sechium edule HOM05D006233 ORTHO05D007247 2.5e-11 72.4 65 67.7
Sopen06g022210 Solanum pennellii HOM05D006233 ORTHO05D007247 2.5e-11 72.4 145 42.8
Zm00001eb160070 Zea mays HOM05D006233 ORTHO05D007247 2.5e-11 72.4 136 44.1
Solyc06g062760.3 Solanum lycopersicum HOM05D006233 ORTHO05D007247 3.3e-11 72.0 146 42.5
Lj5A42T58 Lonicera japonica HOM05D006233 ORTHO05D007247 4.3e-11 71.6 65 66.2
Psat4g187760 Pisum sativum HOM05D006233 ORTHO05D007247 4.3e-11 71.6 127 41.7
Cc04_g01780 Coffea canephora HOM05D006233 ORTHO05D007247 5.7e-11 71.2 148 41.2
PSO210G5036 Papaver somniferum HOM05D006233 ORTHO05D007247 7.4e-11 70.9 142 40.8
MBI04_g36913_MAGBIO Magnolia biondii HOM05D006233 ORTHO05D007247 1.7e-10 69.7 143 39.9
PGSC0003DMG400004851 Solanum tuberosum HOM05D006233 ORTHO05D007247 1.7e-10 69.7 64 65.6
HanXRQChr10g0312401 Helianthus annuus HOM05D006233 ORTHO05D007247 2.2e-10 69.3 158 38.0
Lalb_Chr25g0280771 Lupinus albus HOM05D006233 ORTHO05D007247 2.2e-10 69.3 138 42.8
Duzib192G0098 Durio zibethinus HOM05D006233 ORTHO05D007247 2.8e-10 68.9 113 46.0
ECA234G2580 Erigeron canadensis HOM05D006233 ORTHO05D007247 8.2e-10 67.4 148 42.6
ATR0789G010 Amborella trichopoda HOM05D006233 ORTHO05D007247 1.4e-09 66.6 85 50.6
Peaxi162Scf00207g01343 Petunia axillaris HOM05D006233 ORTHO05D007247 1.8e-09 66.2 101 48.5
ClCG07G013950 Citrullus lanatus HOM05D006233 ORTHO05D007247 1.5e-08 63.2 57 68.4
Os01g0571200 Oryza sativa ssp. japonica HOM05D006233 ORTHO05D007247 7.7e-08 60.8 56 62.5
FAN11G2894 Fragaria x ananassa HOM05D000283 ORTHO05D007247 5.0e-07 58.2 146 38.4
HanXRQChr04g0094941 Helianthus annuus HOM05D006233 ORTHO05D007247 8.5e-07 57.4 143 39.2
arahy.Tifrunner.gnm1.ann1.9P6A99 Arachis hypogaea HOM05D006233 ORTHO05D007247 1.1e-06 57.0 109 39.4
FAN21G3416 Fragaria x ananassa HOM05D006233 ORTHO05D007247 1.4e-06 56.6 117 40.2
Pp3c4_29560 Physcomitrium patens HOM05D006233 ORTHO05D007247 2.5e-06 55.8 58 50.0
Actinidia32155 Actinidia chinensis HOM05D006233 ORTHO05D007247 3.2e-06 55.5 65 58.5


User provided reference genes

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