Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g29079 Brassica carinata HOM05D010764 ORTHO05D016724 3.9e-258 894.4 495 100.0
BcaC02g07975 Brassica carinata HOM05D010764 ORTHO05D016724 9.9e-121 438.0 480 54.4
BcaB07g30348 Brassica carinata HOM05D010764 ORTHO05D016724 1.7e-120 437.2 480 53.1
BcaC08g47582 Brassica carinata HOM05D010764 ORTHO05D016724 4.2e-103 379.4 495 47.9
BolC5t33965H Brassica oleracea HOM05D010764 ORTHO05D016724 1.5e-92 344.4 183 97.3
A06p43710 Brassica napus HOM05D000496 ORTHO05D000411 1.1e-50 205.3 579 32.3
BolC1t01721H Brassica oleracea HOM05D000496 ORTHO05D000411 2.0e-49 201.1 593 33.1
BcaC05g25046 Brassica carinata HOM05D010764 ORTHO05D016724 1.3e-48 198.4 292 47.9
BolC7t45625H Brassica oleracea HOM05D010764 ORTHO05D016724 6.6e-48 196.1 349 40.7
C06p17800 Brassica napus HOM05D010764 ORTHO05D016724 3.4e-36 157.1 380 40.3
BcaC08g42936 Brassica carinata HOM05D000496 ORTHO05D000411 7.5e-36 156.0 336 35.1
BcaC03g17398 Brassica carinata HOM05D000003 ORTHO05D000006 2.4e-34 151.0 414 32.1
BcaC07g38676 Brassica carinata HOM05D000496 ORTHO05D000411 6.0e-33 146.4 360 32.8
C02p47150 Brassica napus HOM05D010764 ORTHO05D016724 5.6e-31 139.8 346 35.0
BcaC09g48986 Brassica carinata HOM05D019368 ORTHO05D024471 1.2e-30 138.7 282 38.7
BolC9t57656H Brassica oleracea HOM05D000496 ORTHO05D000411 5.2e-29 133.3 65 100.0
BcaC01g00333 Brassica carinata HOM05D010764 ORTHO05D003091 6.8e-29 132.9 296 37.5
BcaB02g10222 Brassica carinata HOM05D000106 ORTHO05D000160 9.9e-28 129.0 247 38.5
BcaB05g24571 Brassica carinata HOM05D000003 ORTHO05D000006 3.8e-27 127.1 414 28.3
BraA08t33995Z Brassica rapa HOM05D010764 ORTHO05D013521 2.3e-24 117.9 429 31.2
BcaB06g28004 Brassica carinata HOM05D000003 ORTHO05D000006 8.7e-24 115.9 126 53.2
BolC7t42883H Brassica oleracea HOM05D000496 ORTHO05D000411 1.2e-22 112.1 313 28.4
C02p49320 Brassica napus HOM05D000003 ORTHO05D013521 3.6e-22 110.5 215 38.6
BcaC05g29819 Brassica carinata HOM05D011391 ORTHO05D021438 3.8e-19 100.5 127 46.5
BcaC03g17805 Brassica carinata HOM05D009214 ORTHO05D013521 8.4e-19 99.4 507 26.0
BolC5t34388H Brassica oleracea HOM05D009214 ORTHO05D000411 5.4e-18 96.7 222 34.7
C06p01420 Brassica napus HOM05D000003 ORTHO05D000006 1.7e-16 91.7 152 34.9
BcaB02g11325 Brassica carinata HOM05D009214 ORTHO05D013521 3.9e-16 90.5 516 26.6
BcaB05g24570 Brassica carinata HOM05D000496 ORTHO05D000411 1.9e-15 88.2 66 68.2
C02p51670 Brassica napus HOM05D009214 ORTHO05D000411 1.9e-15 88.2 162 36.4
BraA01t04229Z Brassica rapa HOM05D000003 ORTHO05D000006 5.6e-15 86.7 163 36.8
BcaC09g51021 Brassica carinata HOM05D000022 ORTHO05D000071 6.2e-14 83.2 145 44.1
BcaB04g20648 Brassica carinata HOM05D030556 ORTHO05D027414 3.1e-13 80.9 230 32.2
BcaB03g15672 Brassica carinata HOM05D000003 ORTHO05D000006 9.0e-13 79.3 59 54.2
BcaB07g33425 Brassica carinata HOM05D000496 ORTHO05D000411 1.2e-12 79.0 151 35.8
BcaB07g32061 Brassica carinata HOM05D000003 ORTHO05D000006 1.5e-12 78.6 58 53.4
BcaB08g34387 Brassica carinata HOM05D000003 ORTHO05D000006 1.5e-12 78.6 58 51.7
BcaC02g09909 Brassica carinata HOM05D000003 ORTHO05D000006 1.5e-12 78.6 59 52.5
BolC2t11019H Brassica oleracea HOM05D009214 ORTHO05D013521 3.4e-12 77.4 402 26.9
C06p28390 Brassica napus HOM05D000496 ORTHO05D000411 4.5e-12 77.0 72 56.9
BcaB03g14160 Brassica carinata HOM05D000496 ORTHO05D000411 5.8e-12 76.6 61 52.5
BcaC09g47652 Brassica carinata HOM05D000003 ORTHO05D000006 5.8e-12 76.6 478 24.5
C05p04150 Brassica napus HOM05D000496 ORTHO05D000411 5.8e-12 76.6 61 62.3
AL1G24220 Arabidopsis lyrata HOM05D010764 ORTHO05D000411 7.6e-12 76.3 121 40.5
BcaB03g14070 Brassica carinata HOM05D010764 ORTHO05D000411 1.7e-11 75.1 54 72.2
BcaC06g36207 Brassica carinata HOM05D000003 ORTHO05D015459 2.2e-11 74.7 53 54.7
BolC4t24907H Brassica oleracea HOM05D020256 ORTHO05D000411 2.2e-11 74.7 65 58.5
BolC7t42143H Brassica oleracea HOM05D000003 ORTHO05D027524 2.2e-11 74.7 58 50.0
BcaC06g34875 Brassica carinata HOM05D000003 ORTHO05D000006 2.9e-11 74.3 62 46.8
BolC6t35665H Brassica oleracea HOM05D009214 ORTHO05D013521 2.9e-11 74.3 334 28.4
C02p20270 Brassica napus HOM05D009214 ORTHO05D000411 3.8e-11 73.9 65 56.9
BcaC04g23888 Brassica carinata HOM05D011474 ORTHO05D027115 1.4e-10 72.0 535 26.2
BcaC05g27908 Brassica carinata HOM05D000003 ORTHO05D000006 1.9e-10 71.6 58 48.3
BcaC08g42860 Brassica carinata HOM05D011474 ORTHO05D027115 3.2e-10 70.9 535 25.2
BcaC05g25993 Brassica carinata HOM05D000003 ORTHO05D000006 5.4e-10 70.1 180 30.0
BcaC07g40069 Brassica carinata HOM05D000496 ORTHO05D000411 5.4e-10 70.1 66 51.5
BcaNung04087 Brassica carinata HOM05D000496 ORTHO05D000411 5.4e-10 70.1 66 51.5
BolC9t59648H Brassica oleracea HOM05D000759 ORTHO05D000574 5.4e-10 70.1 47 72.3
BcaC03g15116 Brassica carinata HOM05D000496 ORTHO05D000411 7.1e-10 69.7 711 22.5
BolC2t11809H Brassica oleracea HOM05D000496 ORTHO05D000411 9.3e-10 69.3 65 49.2
BolC6t35268H Brassica oleracea HOM05D009521 ORTHO05D013247 1.2e-09 68.9 542 23.1
BcaB02g08512 Brassica carinata HOM05D000496 ORTHO05D000411 1.6e-09 68.6 67 50.7
BcaC06g34152 Brassica carinata HOM05D000496 ORTHO05D000411 1.6e-09 68.6 65 53.8
BolC3t21595H Brassica oleracea HOM05D000496 ORTHO05D000411 1.6e-09 68.6 68 54.4
BraA03t09650Z Brassica rapa HOM05D000496 ORTHO05D000411 1.6e-09 68.6 68 54.4
BcaB05g25017 Brassica carinata HOM05D011474 ORTHO05D000006 2.1e-09 68.2 553 26.9
BcaC07g36967 Brassica carinata HOM05D000496 ORTHO05D000411 2.1e-09 68.2 65 50.8
C02p52220 Brassica napus HOM05D009214 ORTHO05D013521 2.1e-09 68.2 65 55.4
Carub.0002s0960 Capsella rubella HOM05D000003 ORTHO05D000006 2.1e-09 68.2 78 38.5
BcaC02g09343 Brassica carinata HOM05D000003 ORTHO05D021670 3.5e-09 67.4 421 22.6
A02p15120 Brassica napus HOM05D009214 ORTHO05D013521 4.6e-09 67.0 473 24.5
BolC2t11253H Brassica oleracea HOM05D000496 ORTHO05D000411 4.6e-09 67.0 68 51.5
BcaC03g15337 Brassica carinata HOM05D000003 ORTHO05D000006 6.0e-09 66.6 59 45.8
BolC8t47400H Brassica oleracea HOM05D000003 ORTHO05D000006 6.0e-09 66.6 59 47.5
BraA02t05709Z Brassica rapa HOM05D011474 ORTHO05D016098 6.0e-09 66.6 191 34.6
Thhalv10027079m.g Eutrema salsugineum HOM05D000496 ORTHO05D000411 1.0e-08 65.9 65 52.3
BraA04t16683Z Brassica rapa HOM05D000496 ORTHO05D000411 1.3e-08 65.5 73 47.9
BcaC03g17105 Brassica carinata HOM05D000496 ORTHO05D000411 1.8e-08 65.1 65 49.2
BcaB08g34848 Brassica carinata HOM05D000496 ORTHO05D000411 2.3e-08 64.7 664 22.3
BcaC03g14761 Brassica carinata HOM05D030556 ORTHO05D027090 2.3e-08 64.7 150 37.3
BolC8t49529H Brassica oleracea HOM05D000496 ORTHO05D000411 3.0e-08 64.3 65 46.2
BcaB07g29799 Brassica carinata HOM05D000496 ORTHO05D000411 3.9e-08 63.9 65 50.8
A03p57130 Brassica napus HOM05D009214 ORTHO05D000411 5.1e-08 63.5 75 48.0
C03p32630 Brassica napus HOM05D000496 ORTHO05D000411 5.1e-08 63.5 95 43.2
BolC6t35532H Brassica oleracea HOM05D010764 ORTHO05D000006 5.1e-08 63.5 54 50.0
BolC7t43206H Brassica oleracea HOM05D020256 ORTHO05D000411 5.1e-08 63.5 63 46.0
BcaB07g33683 Brassica carinata HOM05D000003 ORTHO05D000006 6.7e-08 63.2 62 41.9
BcaC06g34876 Brassica carinata HOM05D000496 ORTHO05D000411 6.7e-08 63.2 66 47.0
BcaB08g35777 Brassica carinata HOM05D000496 ORTHO05D000411 1.1e-07 62.4 65 46.2
BolC6t38788H Brassica oleracea HOM05D000385 ORTHO05D027499 1.1e-07 62.4 153 31.4
BcaC06g36164 Brassica carinata HOM05D000496 ORTHO05D000411 1.5e-07 62.0 65 44.6
BcaC08g46847 Brassica carinata HOM05D000496 ORTHO05D000411 1.5e-07 62.0 691 21.7
C06p38500 Brassica napus HOM05D009214 ORTHO05D000411 1.5e-07 62.0 138 36.2
BcaC09g48310 Brassica carinata HOM05D000003 ORTHO05D000006 1.9e-07 61.6 65 49.2
BcaB01g06142 Brassica carinata HOM05D000496 ORTHO05D000411 2.5e-07 61.2 72 38.9
BraA04t15790Z Brassica rapa HOM05D009214 ORTHO05D027438 2.5e-07 61.2 59 54.2
BcaB04g17825 Brassica carinata HOM05D010764 ORTHO05D000411 3.3e-07 60.8 254 29.9
A06p09390 Brassica napus HOM05D000496 ORTHO05D000411 3.3e-07 60.8 65 49.2
C06p05580 Brassica napus HOM05D009214 ORTHO05D013521 3.3e-07 60.8 233 30.9
BolC9t58563H Brassica oleracea HOM05D009521 ORTHO05D000411 4.3e-07 60.5 60 55.0
BcaB04g20647 Brassica carinata HOM05D030556 ORTHO05D027414 5.6e-07 60.1 192 29.7
BolC9t58221H Brassica oleracea HOM05D009214 ORTHO05D013521 5.6e-07 60.1 43 65.1
Thhalv10003106m.g Eutrema salsugineum HOM05D008416 ORTHO05D010671 5.6e-07 60.1 65 47.7
BolC4t24940H Brassica oleracea HOM05D031458 ORTHO05D027524 7.4e-07 59.7 51 52.9
BolC5t31358H Brassica oleracea HOM05D010185 ORTHO05D015459 9.6e-07 59.3 150 30.0
BcaB04g17684 Brassica carinata HOM05D000003 ORTHO05D021670 1.3e-06 58.9 482 26.1
A04p28190 Brassica napus HOM05D010185 ORTHO05D016098 1.3e-06 58.9 189 28.6
A05p25550 Brassica napus HOM05D010764 ORTHO05D013521 1.3e-06 58.9 35 68.6
A05p25540 Brassica napus HOM05D009214 ORTHO05D013521 1.6e-06 58.5 101 42.6
BraA07t28028Z Brassica rapa HOM05D010185 ORTHO05D015459 1.6e-06 58.5 59 50.8
BcaB02g09878 Brassica carinata HOM05D000496 ORTHO05D000411 2.1e-06 58.2 720 21.7
BolC7t42162H Brassica oleracea HOM05D009214 ORTHO05D013521 2.1e-06 58.2 50 56.0
BcaC05g28546 Brassica carinata HOM05D000003 ORTHO05D000006 2.8e-06 57.8 62 40.3
BcaC07g40131 Brassica carinata HOM05D014076 ORTHO05D000006 2.8e-06 57.8 56 48.2
Aa31sc35G90 Aethionema arabicum HOM05D000003 ORTHO05D000006 3.7e-06 57.4 52 40.4
BcaC07g37007 Brassica carinata HOM05D000496 ORTHO05D021670 4.8e-06 57.0 437 24.3
BolC2t10412H Brassica oleracea HOM05D030183 ORTHO05D018675 4.8e-06 57.0 66 34.8
BcaC04g21213 Brassica carinata HOM05D000496 ORTHO05D000411 6.2e-06 56.6 65 44.6
BolC7t40747H Brassica oleracea HOM05D001239 ORTHO05D027739 6.2e-06 56.6 119 33.6
C04p33720 Brassica napus HOM05D031458 ORTHO05D027524 8.1e-06 56.2 114 35.1
BolC5t31122H Brassica oleracea HOM05D000003 ORTHO05D018675 8.1e-06 56.2 58 43.1
BraA07t27837Z Brassica rapa HOM05D000003 ORTHO05D000004 8.1e-06 56.2 316 25.6


User provided reference genes

Program Settings