Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g29074 Brassica carinata HOM05D005725 ORTHO05D007531 1.5e-85 319.7 182 100.0
BolC5t33962H Brassica oleracea HOM05D005725 ORTHO05D007531 2.9e-78 295.4 169 99.4
C09p34670 Brassica napus HOM05D005725 ORTHO05D007531 6.3e-65 251.1 185 73.0
BolC9t56313H Brassica oleracea HOM05D005725 ORTHO05D007531 6.3e-65 251.1 185 73.0
C09p19870 Brassica napus HOM05D005725 ORTHO05D007531 1.7e-57 226.5 172 70.3
BolC9t54892H Brassica oleracea HOM05D005725 ORTHO05D007531 1.7e-57 226.5 172 70.3
BcaB05g23263 Brassica carinata HOM05D005725 ORTHO05D007531 5.8e-50 201.4 141 83.0
BolC2t06810H Brassica oleracea HOM05D005725 ORTHO05D007531 1.9e-48 196.4 148 81.8
C05p52870 Brassica napus HOM05D005725 ORTHO05D007531 3.2e-48 195.7 175 61.7
BcaC04g22388 Brassica carinata HOM05D005725 ORTHO05D007531 4.1e-48 195.3 152 68.4
BcaC03g18554 Brassica carinata HOM05D005725 ORTHO05D007531 2.0e-47 193.0 137 83.9
A02p04160 Brassica napus HOM05D005725 ORTHO05D007531 8.1e-44 181.0 144 81.2
C02p09010 Brassica napus HOM05D005725 ORTHO05D007531 1.4e-43 180.3 140 82.1
BraA02t05379Z Brassica rapa HOM05D005725 ORTHO05D007531 8.9e-43 177.6 139 82.0
Sp6g26850 Schrenkiella parvula HOM05D005725 ORTHO05D007531 1.7e-41 173.3 136 68.4
CARHR195840 Cardamine hirsuta HOM05D005725 ORTHO05D007531 4.7e-36 155.2 136 69.9
Thhalv10015915m.g Eutrema salsugineum HOM05D005725 ORTHO05D007531 8.1e-36 154.5 132 65.2
AT5G17370 Arabidopsis thaliana HOM05D005725 ORTHO05D007531 5.2e-35 151.8 147 64.6
Carub.0006s1558 Capsella rubella HOM05D005725 ORTHO05D007531 1.2e-34 150.6 137 68.6
AL6G28440 Arabidopsis lyrata HOM05D005725 ORTHO05D007531 1.5e-34 150.2 136 67.6
BraA09t40805Z Brassica rapa HOM05D005725 ORTHO05D007531 3.1e-27 125.9 100 80.0
Aa31LG11G12260 Aethionema arabicum HOM05D005725 ORTHO05D007531 4.0e-27 125.6 136 50.7
FAN21G2681 Fragaria x ananassa HOM05D005725 ORTHO05D007531 3.0e-22 109.4 135 42.2
FAN25G0714 Fragaria x ananassa HOM05D005725 ORTHO05D007531 5.1e-22 108.6 131 42.7
FvH4_3g13240 Fragaria vesca HOM05D005725 ORTHO05D007531 8.7e-22 107.8 135 42.2
FAN16G0048 Fragaria x ananassa HOM05D005725 ORTHO05D007531 8.7e-22 107.8 135 42.2
FAN11G2553 Fragaria x ananassa HOM05D005725 ORTHO05D007531 2.5e-21 106.3 135 41.5
RcHm_v2.0_Chr5g0021701 Rosa chinensis HOM05D005725 ORTHO05D007531 3.3e-21 105.9 135 41.5
CANSAT54G1139 Cannabis sativa HOM05D005725 ORTHO05D007531 1.3e-20 104.0 135 41.5
Prupe.4G119800 Prunus persica HOM05D005725 ORTHO05D007531 3.6e-20 102.4 135 40.0
Dinv17876 Davidia involucrata HOM05D005725 ORTHO05D007531 4.8e-20 102.1 139 43.2
GSVIVG01010083001 Vitis vinifera HOM05D005725 ORTHO05D007531 1.1e-19 100.9 136 44.1
TAR626G0843 Trochodendron aralioides HOM05D005725 ORTHO05D007531 1.4e-19 100.5 135 39.3
RcHm_v2.0_Chr5g0021601 Rosa chinensis HOM05D005725 ORTHO05D007531 6.9e-19 98.2 135 39.3
Potri.001G075300 Populus trichocarpa HOM05D005725 ORTHO05D007531 9.0e-19 97.8 135 38.5
Aqoxy1G01377 Aquilegia oxysepala HOM05D005725 ORTHO05D007531 1.2e-18 97.4 135 39.3
Nn7g38404 Nelumbo nucifera HOM05D005725 ORTHO05D007531 1.5e-18 97.1 141 38.3
MD05G1243800 Malus domestica HOM05D005725 ORTHO05D007531 2.0e-18 96.7 135 38.5
Manes.03G071900 Manihot esculenta HOM05D005725 ORTHO05D007531 3.4e-18 95.9 135 37.8
Haze_05199 Corylus avellana HOM05D005725 ORTHO05D007531 7.6e-18 94.7 132 46.2
Sabra01G0053700 Salix brachista HOM05D005725 ORTHO05D007531 7.6e-18 94.7 136 39.0
Peaxi162Scf00378g00520 Petunia axillaris HOM05D005725 ORTHO05D007531 2.2e-17 93.2 140 44.3
Ciclev10015389m.g Citrus clementina HOM05D005725 ORTHO05D007531 6.4e-17 91.7 136 37.5
TWI38G1126 Tripterygium wilfordii HOM05D005725 ORTHO05D007531 8.4e-17 91.3 136 39.0
Lalb_Chr18g0051971 Lupinus albus HOM05D005725 ORTHO05D007531 2.4e-16 89.7 133 36.1
arahy.Tifrunner.gnm1.ann1.2M6VYA Arachis hypogaea HOM05D005725 ORTHO05D007531 5.4e-16 88.6 142 50.7
Glyma.15G155900 Glycine max HOM05D005725 ORTHO05D007531 5.4e-16 88.6 133 37.6
Lsat_1_v5_gn_8_107401 Lactuca sativa HOM05D005725 ORTHO05D007531 7.1e-16 88.2 132 44.7
VMungo1309G0521 Vigna mungo HOM05D005725 ORTHO05D007531 7.1e-16 88.2 134 39.6
Medtr2g437810 Medicago truncatula HOM05D005725 ORTHO05D007531 1.2e-15 87.4 135 38.5
PSO541G5061 Papaver somniferum HOM05D005725 ORTHO05D007531 1.2e-15 87.4 141 38.3
Phvul.009G244300 Phaseolus vulgaris HOM05D005725 ORTHO05D007531 1.2e-15 87.4 133 39.8
arahy.Tifrunner.gnm1.ann1.GBFD5K Arachis hypogaea HOM05D005725 ORTHO05D007531 2.1e-15 86.7 138 41.3
Glyma.09G048600 Glycine max HOM05D005725 ORTHO05D007531 3.5e-15 85.9 133 36.8
Solyc01g021640.3 Solanum lycopersicum HOM05D005725 ORTHO05D007531 3.5e-15 85.9 140 39.3
CiPaw.10G107600 Carya illinoinensis HOM05D005725 ORTHO05D007531 4.6e-15 85.5 153 33.3
Ca_02400_v3 Cicer arietinum L. HOM05D005725 ORTHO05D007531 4.6e-15 85.5 133 36.8
MELO3C007000.2 Cucumis melo HOM05D005725 ORTHO05D007531 4.6e-15 85.5 133 32.3
arahy.Tifrunner.gnm1.ann1.G9C5AI Arachis hypogaea HOM05D005725 ORTHO05D007531 6.0e-15 85.1 138 41.3
Zm00001eb298410 Zea mays HOM05D005725 ORTHO05D007531 6.0e-15 85.1 133 32.3
Atru.chr2.2825 Acer truncatum HOM05D005725 ORTHO05D007531 1.0e-14 84.3 135 37.0
SalBow8G4963 Salvia bowleyana HOM05D005725 ORTHO05D007531 1.0e-14 84.3 144 38.9
Sopen01g016500 Solanum pennellii HOM05D005725 ORTHO05D007531 1.0e-14 84.3 135 38.5
ECA232G4493 Erigeron canadensis HOM05D005725 ORTHO05D007531 3.9e-14 82.4 137 35.8
MSTRG.16376 Avicennia marina HOM05D005725 ORTHO05D007531 5.1e-14 82.0 135 34.1
COL.COLO4_25036 Corchorus olitorius HOM05D005725 ORTHO05D007531 5.1e-14 82.0 137 35.0
Sed0022851 Sechium edule HOM05D005725 ORTHO05D007531 5.1e-14 82.0 135 34.1
Ah.03g147910 Amaranthus hybridus HOM05D005725 ORTHO05D007531 6.7e-14 81.6 135 35.6
Lj6g0004794 Lotus japonicus HOM05D005725 ORTHO05D007531 6.7e-14 81.6 136 33.8
HanXRQChr09g0257851 Helianthus annuus HOM05D005725 ORTHO05D007531 1.5e-13 80.5 136 39.0
DCAR_001262 Daucus carota HOM05D005725 ORTHO05D007531 3.3e-13 79.3 140 46.4
CDE06G0984 Ceratophyllum demersum HOM05D005725 ORTHO05D007531 9.6e-13 77.8 139 33.8
SGA_v2.0_scaffold423G51459 Striga asiatica HOM05D005725 ORTHO05D007531 9.6e-13 77.8 132 34.8
Thecc.02G002000 Theobroma cacao HOM05D005725 ORTHO05D007531 9.6e-13 77.8 136 33.8
A03p08350 Brassica napus HOM05D005725 ORTHO05D007531 1.3e-12 77.4 74 60.8
Migut.M02028 Erythranthe guttata HOM05D005725 ORTHO05D007531 2.1e-12 76.6 138 34.8
Psat1g151080 Pisum sativum HOM05D005725 ORTHO05D007531 3.6e-12 75.9 132 32.6
Os07g0108000 Oryza sativa ssp. japonica HOM05D005725 ORTHO05D007531 4.8e-12 75.5 133 41.4
Gorai.007G055200 Gossypium raimondii HOM05D005725 ORTHO05D007531 6.2e-12 75.1 141 34.0
HPP92_000831 Vanilla planifolia HOM05D005725 ORTHO05D007531 6.2e-12 75.1 134 33.6
TPR.G30931 Trifolium pratense HOM05D005725 ORTHO05D007531 8.1e-12 74.7 131 36.6
AUR62003571 Chenopodium quinoa HOM05D005725 ORTHO05D007531 1.1e-11 74.3 135 32.6
Eucgr.D00006 Eucalyptus grandis HOM05D005725 ORTHO05D007531 1.4e-11 73.9 135 41.5
AUR62017886 Chenopodium quinoa HOM05D005725 ORTHO05D007531 1.8e-11 73.6 135 31.9
Cc09_g04730 Coffea canephora HOM05D005725 ORTHO05D007531 4.0e-11 72.4 137 30.7
QL11p011022 Quercus lobata HOM05D005725 ORTHO05D007531 5.3e-11 72.0 186 29.0
Gohir.A11G047200 Gossypium hirsutum HOM05D005725 ORTHO05D007531 6.9e-11 71.6 141 33.3
CSS0030006 Camellia sinensis var. sinensis HOM05D005725 ORTHO05D007531 3.4e-10 69.3 102 42.2
Duzib052G0524 Durio zibethinus HOM05D005725 ORTHO05D007531 3.4e-10 69.3 133 33.8
Gohir.D11G050800 Gossypium hirsutum HOM05D005725 ORTHO05D007531 5.8e-10 68.6 141 32.6
PGR004G2791 Punica granatum HOM05D005725 ORTHO05D007531 1.7e-09 67.0 137 32.1
Cfa001153 Carpinus fangiana HOM05D005725 ORTHO05D007531 2.2e-09 66.6 82 41.5
Duzib132G0485 Durio zibethinus HOM05D005725 ORTHO05D007531 1.4e-08 63.9 152 30.3
ClCG01G025890 Citrullus lanatus HOM05D005725 ORTHO05D007531 1.2e-07 60.8 76 39.5
ATR0794G001 Amborella trichopoda HOM05D005725 ORTHO05D007531 4.6e-07 58.9 136 32.4


User provided reference genes

Program Settings