Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g29058 Brassica carinata HOM05D001692 ORTHO05D003541 5.3e-156 554.3 277 100.0
C05p52680 Brassica napus HOM05D001692 ORTHO05D003541 5.3e-156 554.3 277 100.0
BolC5t33947H Brassica oleracea HOM05D001692 ORTHO05D003541 1.3e-141 506.5 273 93.8
BcaC05g29056 Brassica carinata HOM05D001692 ORTHO05D003541 4.3e-129 464.9 234 99.1
BraA05t22295Z Brassica rapa HOM05D001692 ORTHO05D003541 3.4e-126 455.3 260 88.8
A05p34830 Brassica napus HOM05D001692 ORTHO05D003541 1.2e-123 446.8 276 85.5
Sp3g12860 Schrenkiella parvula HOM05D001692 ORTHO05D003541 1.2e-112 410.2 275 74.9
Thhalv10020164m.g Eutrema salsugineum HOM05D001692 ORTHO05D003541 2.7e-107 392.5 277 75.5
BcaB06g25372 Brassica carinata HOM05D001692 ORTHO05D003541 2.1e-104 382.9 265 78.1
C01p49860 Brassica napus HOM05D001692 ORTHO05D003541 7.1e-100 367.9 259 74.5
BolC1t04943H Brassica oleracea HOM05D001692 ORTHO05D003541 7.1e-100 367.9 259 74.5
CARHR089550 Cardamine hirsuta HOM05D001692 ORTHO05D003541 1.6e-99 366.7 281 66.9
A01p39160 Brassica napus HOM05D001692 ORTHO05D003541 3.5e-99 365.5 259 74.1
BraA01t03961Z Brassica rapa HOM05D001692 ORTHO05D003541 3.5e-99 365.5 259 73.7
AL3G26920 Arabidopsis lyrata HOM05D001692 ORTHO05D003541 1.0e-98 364.0 272 70.2
Carub.0003s1429 Capsella rubella HOM05D001692 ORTHO05D003541 2.5e-97 359.4 264 70.8
AT3G14590 Arabidopsis thaliana HOM05D001692 ORTHO05D003541 4.4e-94 348.6 272 68.4
Aa31LG8G1800 Aethionema arabicum HOM05D001692 ORTHO05D003541 1.0e-82 310.8 274 58.8
THA.LOC104822597 Tarenaya hassleriana HOM05D001692 ORTHO05D003541 1.4e-79 300.4 275 57.5
Sp1g40090 Schrenkiella parvula HOM05D001692 ORTHO05D003541 3.9e-74 282.3 271 57.6
BcaB02g10911 Brassica carinata HOM05D001692 ORTHO05D003541 3.3e-73 279.3 278 54.0
A05p18190 Brassica napus HOM05D001692 ORTHO05D003541 1.3e-72 277.3 263 54.8
BraA05t20712Z Brassica rapa HOM05D001692 ORTHO05D003541 1.3e-72 277.3 263 54.8
C06p15020 Brassica napus HOM05D001692 ORTHO05D003541 1.6e-72 276.9 263 54.8
BolC6t36679H Brassica oleracea HOM05D001692 ORTHO05D003541 1.6e-72 276.9 263 54.8
BcaC08g44126 Brassica carinata HOM05D001692 ORTHO05D003541 3.7e-72 275.8 263 54.4
Thhalv10011273m.g Eutrema salsugineum HOM05D001692 ORTHO05D003541 2.9e-69 266.2 264 54.9
Carub.0001s4280 Capsella rubella HOM05D001692 ORTHO05D003541 4.2e-68 262.3 262 53.8
AT1G53590 Arabidopsis thaliana HOM05D001692 ORTHO05D003541 3.5e-67 259.2 271 53.9
CARHR043850 Cardamine hirsuta HOM05D001692 ORTHO05D003541 1.8e-66 256.9 263 52.9
BcaC09g48428 Brassica carinata HOM05D001692 ORTHO05D003541 1.6e-64 250.4 173 74.6
Manes.15G100600 Manihot esculenta HOM05D001692 ORTHO05D003541 2.4e-63 246.5 275 51.6
Haze_08475 Corylus avellana HOM05D001692 ORTHO05D003541 8.5e-61 238.0 274 48.5
Aa31LG10G1660 Aethionema arabicum HOM05D001692 ORTHO05D003541 5.5e-60 235.3 236 54.7
CiPaw.11G067800 Carya illinoinensis HOM05D001692 ORTHO05D003541 5.7e-57 225.3 255 48.2
TWI38G0873 Tripterygium wilfordii HOM05D001692 ORTHO05D003541 1.3e-56 224.2 278 46.8
COL.COLO4_17437 Corchorus olitorius HOM05D001692 ORTHO05D003541 8.2e-56 221.5 279 45.9
Ciclev10018996m.g Citrus clementina HOM05D001692 ORTHO05D003541 2.4e-55 219.9 270 48.1
Cfa019475 Carpinus fangiana HOM05D001692 ORTHO05D003541 4.1e-55 219.2 274 45.6
Dinv26680 Davidia involucrata HOM05D001692 ORTHO05D003541 1.2e-54 217.6 277 46.6
Duzib213G0773 Durio zibethinus HOM05D001692 ORTHO05D003541 1.2e-54 217.6 271 47.2
Thecc.07G141900 Theobroma cacao HOM05D001692 ORTHO05D003541 1.0e-53 214.5 279 45.9
Ca_03403_v3 Cicer arietinum L. HOM05D001692 ORTHO05D003541 6.5e-53 211.8 281 42.7
TPR.G29673 Trifolium pratense HOM05D001692 ORTHO05D003541 6.5e-53 211.8 293 44.7
Duzib268G0118 Durio zibethinus HOM05D001692 ORTHO05D003541 1.6e-51 207.2 271 45.4
Lj3g0005272 Lotus japonicus HOM05D001692 ORTHO05D003541 3.6e-51 206.1 288 41.0
Gorai.002G042800 Gossypium raimondii HOM05D001692 ORTHO05D003541 4.6e-51 205.7 284 44.7
TWI38G2140 Tripterygium wilfordii HOM05D001692 ORTHO05D003541 6.1e-51 205.3 246 47.2
RcHm_v2.0_Chr5g0028351 Rosa chinensis HOM05D001692 ORTHO05D003541 7.9e-51 204.9 265 45.7
CSS0029038 Camellia sinensis var. sinensis HOM05D001692 ORTHO05D003541 1.0e-50 204.5 278 47.1
Gohir.A01G043500 Gossypium hirsutum HOM05D001692 ORTHO05D003541 1.4e-50 204.1 282 45.0
Medtr2g072180 Medicago truncatula HOM05D001692 ORTHO05D003541 1.4e-50 204.1 288 41.7
C01p49900 Brassica napus HOM05D001692 ORTHO05D003541 1.8e-50 203.8 257 49.4
BolC1t04947H Brassica oleracea HOM05D001692 ORTHO05D003541 1.8e-50 203.8 257 49.4
FAN21G3942 Fragaria x ananassa HOM05D001692 ORTHO05D003541 1.5e-49 200.7 265 44.5
Gohir.D01G034600 Gossypium hirsutum HOM05D001692 ORTHO05D003541 2.0e-49 200.3 257 47.1
Potri.001G379800 Populus trichocarpa HOM05D001692 ORTHO05D003541 2.0e-49 200.3 271 44.6
FvH4_3g17020 Fragaria vesca HOM05D001692 ORTHO05D003541 2.6e-49 199.9 265 44.2
FAN16G0240 Fragaria x ananassa HOM05D001692 ORTHO05D003541 2.6e-49 199.9 265 44.2
CSS0027870 Camellia sinensis var. sinensis HOM05D001692 ORTHO05D003541 4.3e-49 199.1 278 46.4
Hma1.2p1_0280F.1_g112850 Hydrangea macrophylla HOM05D001692 ORTHO05D003541 5.7e-49 198.7 275 43.6
FAN11G2256 Fragaria x ananassa HOM05D001692 ORTHO05D003541 7.4e-49 198.4 265 44.2
Manes.03G091048 Manihot esculenta HOM05D001692 ORTHO05D003541 1.7e-48 197.2 275 44.4
RhsimUnG0205700 Rhododendron simsii HOM05D001692 ORTHO05D003541 2.8e-48 196.4 277 44.8
Psat1g009080 Pisum sativum HOM05D001692 ORTHO05D003541 1.4e-47 194.1 277 41.2
Lalb_Chr20g0109021 Lupinus albus HOM05D001692 ORTHO05D003541 2.4e-47 193.4 294 42.5
MD00G1185500 Malus domestica HOM05D001692 ORTHO05D003541 2.9e-45 186.4 256 42.2
Lj1C819T6 Lonicera japonica HOM05D001692 ORTHO05D003541 1.6e-43 180.6 274 44.5
CiPaw.12G046400 Carya illinoinensis HOM05D001692 ORTHO05D003541 2.1e-43 180.3 270 43.0
Glyma.13G261200 Glycine max HOM05D001692 ORTHO05D003541 2.7e-43 179.9 288 40.6
QL04p069054 Quercus lobata HOM05D001692 ORTHO05D003541 4.7e-43 179.1 283 40.3
Prupe.4G152300 Prunus persica HOM05D001692 ORTHO05D003541 1.0e-42 177.9 288 38.9
DCAR_017572 Daucus carota HOM05D001692 ORTHO05D003541 1.8e-42 177.2 284 41.5
DCAR_025852 Daucus carota HOM05D001692 ORTHO05D003541 1.8e-42 177.2 284 41.5
vmacro09425 Vaccinium macrocarpon HOM05D001692 ORTHO05D003541 1.8e-42 177.2 280 41.4
Dinv13327 Davidia involucrata HOM05D001692 ORTHO05D003541 1.1e-41 174.5 283 42.0
CSS0044469 Camellia sinensis var. sinensis HOM05D001692 ORTHO05D003541 2.0e-41 173.7 298 40.3
FAN25G2855 Fragaria x ananassa HOM05D001692 ORTHO05D003541 3.3e-41 172.9 193 48.7
Eucgr.F01402 Eucalyptus grandis HOM05D001692 ORTHO05D003541 1.7e-40 170.6 267 38.6
PGR031G3933 Punica granatum HOM05D001692 ORTHO05D003541 2.8e-40 169.9 274 39.1
Sed0022537 Sechium edule HOM05D001692 ORTHO05D003541 8.2e-40 168.3 272 39.0
Nn4g26545 Nelumbo nucifera HOM05D001692 ORTHO05D003541 1.1e-39 167.9 288 37.5
Peaxi162Scf00000g00522 Petunia axillaris HOM05D001692 ORTHO05D003541 3.1e-39 166.4 286 39.2
Cc05_g10450 Coffea canephora HOM05D001692 ORTHO05D003541 4.1e-39 166.0 279 38.7
Actinidia03647 Actinidia chinensis HOM05D001692 ORTHO05D003541 5.3e-39 165.6 272 41.2
Eucgr.F03215 Eucalyptus grandis HOM05D001692 ORTHO05D003541 5.3e-39 165.6 251 39.8
CANSAT56G4466 Cannabis sativa HOM05D001692 ORTHO05D003541 2.6e-38 163.3 270 37.8
Oeu026470.2 Olea europaea HOM05D001692 ORTHO05D003541 1.0e-37 161.4 287 39.4
MD03G1254900 Malus domestica HOM05D001692 ORTHO05D003541 1.7e-37 160.6 272 39.0
Nitab4.5_0000639g0080 Nicotiana tabacum HOM05D001692 ORTHO05D003541 1.7e-37 160.6 285 37.5
MSTRG.15019 Avicennia marina HOM05D001692 ORTHO05D003541 3.8e-37 159.5 291 38.8
Phvul.005G062600 Phaseolus vulgaris HOM05D001692 ORTHO05D003541 3.8e-37 159.5 275 41.1
Prupe.4G152200 Prunus persica HOM05D001692 ORTHO05D003541 5.0e-37 159.1 227 41.9
CsaV3_4G032610 Cucumis sativus L. HOM05D001692 ORTHO05D003541 8.5e-37 158.3 276 40.6
MELO3C025594.2 Cucumis melo HOM05D001692 ORTHO05D003541 1.5e-36 157.5 275 40.4
Actinidia12620 Actinidia chinensis HOM05D001692 ORTHO05D003541 2.5e-36 156.8 254 39.8
Gohir.A07G155726 Gossypium hirsutum HOM05D001692 ORTHO05D003541 3.2e-36 156.4 275 37.1
VMungo1080G1562 Vigna mungo HOM05D001692 ORTHO05D003541 3.2e-36 156.4 275 41.1
Glyma.15G245600 Glycine max HOM05D001692 ORTHO05D003541 4.2e-36 156.0 279 38.4
Nitab4.5_0007142g0010 Nicotiana tabacum HOM05D001692 ORTHO05D003541 4.2e-36 156.0 268 37.7
Sed0010110 Sechium edule HOM05D001692 ORTHO05D003541 7.2e-36 155.2 274 38.0
MD11G1275800 Malus domestica HOM05D001692 ORTHO05D003541 9.4e-36 154.8 209 42.1
Peaxi162Scf00111g01142 Petunia axillaris HOM05D001692 ORTHO05D003541 9.4e-36 154.8 283 37.5
RcHm_v2.0_Chr5g0028301 Rosa chinensis HOM05D001692 ORTHO05D003541 9.4e-36 154.8 237 38.0
vmacro12002 Vaccinium macrocarpon HOM05D001692 ORTHO05D003541 2.7e-35 153.3 284 37.3
PGSC0003DMG400008571 Solanum tuberosum HOM05D001692 ORTHO05D003541 3.6e-35 152.9 268 35.4
TAR627G0639 Trochodendron aralioides HOM05D001692 ORTHO05D003541 4.7e-35 152.5 222 40.5
Migut.M00625 Erythranthe guttata HOM05D001692 ORTHO05D003541 1.8e-34 150.6 291 37.1
FvH4_3g16980 Fragaria vesca HOM05D001692 ORTHO05D003541 1.8e-34 150.6 251 35.9
Nitab4.5_0006409g0010 Nicotiana tabacum HOM05D001692 ORTHO05D003541 1.8e-34 150.6 297 35.4
FAN11G2574 Fragaria x ananassa HOM05D001692 ORTHO05D003541 3.0e-34 149.8 251 36.3
Nitab4.5_0005492g0010 Nicotiana tabacum HOM05D001692 ORTHO05D003541 3.0e-34 149.8 282 36.9
CAN.G375.76 Capsicum annuum HOM05D001692 ORTHO05D003541 5.2e-34 149.1 301 35.5
MD11G1276000 Malus domestica HOM05D001692 ORTHO05D003541 5.2e-34 149.1 273 37.0
CAN.G315.9 Capsicum annuum HOM05D001692 ORTHO05D003541 8.8e-34 148.3 277 36.1
Sc03g0010920 Simmondsia chinensis HOM05D001692 ORTHO05D003541 2.0e-33 147.1 284 37.7
PGSC0003DMG400007079 Solanum tuberosum HOM05D001692 ORTHO05D003541 3.3e-33 146.4 258 38.4
Sopen12g006770 Solanum pennellii HOM05D001692 ORTHO05D003541 7.5e-33 145.2 271 36.2
Solyc12g011420.2 Solanum lycopersicum HOM05D001692 ORTHO05D003541 1.7e-32 144.1 271 35.8
Lalb_Chr01g0016131 Lupinus albus HOM05D001692 ORTHO05D003541 2.2e-32 143.7 226 39.8
Nn3g20725 Nelumbo nucifera HOM05D001692 ORTHO05D003541 3.7e-32 142.9 275 33.8
Gohir.A04G046400 Gossypium hirsutum HOM05D001692 ORTHO05D003541 8.2e-32 141.7 274 36.5
HanXRQChr03g0072701 Helianthus annuus HOM05D001692 ORTHO05D003541 1.1e-31 141.4 295 36.9
Sopen07g030220 Solanum pennellii HOM05D001692 ORTHO05D003541 1.8e-31 140.6 258 35.3
Hund02324 Selenicereus undatus HOM05D001692 ORTHO05D003541 7.0e-31 138.7 288 35.1
Rhsim06G0186500 Rhododendron simsii HOM05D001692 ORTHO05D003541 9.1e-31 138.3 201 42.8
ECA240G0884 Erigeron canadensis HOM05D001692 ORTHO05D003541 1.2e-30 137.9 255 38.0
Aqoxy1G01723 Aquilegia oxysepala HOM05D001692 ORTHO05D003541 2.7e-30 136.7 282 35.1
FAN16G2563 Fragaria x ananassa HOM05D001692 ORTHO05D003541 2.7e-30 136.7 262 34.4
arahy.Tifrunner.gnm1.ann1.SDH4Q1 Arachis hypogaea HOM05D001692 ORTHO05D003541 5.9e-30 135.6 309 35.6
arahy.Tifrunner.gnm1.ann1.RU54A6 Arachis hypogaea HOM05D001692 ORTHO05D003541 1.0e-29 134.8 305 35.7
Solyc07g061950.4 Solanum lycopersicum HOM05D001692 ORTHO05D003541 1.3e-29 134.4 217 36.9
AUR62037985 Chenopodium quinoa HOM05D001692 ORTHO05D003541 1.5e-28 131.0 244 39.3
Oeu006135.1 Olea europaea HOM05D001692 ORTHO05D003541 1.9e-28 130.6 243 37.9
Lsat_1_v5_gn_9_101380 Lactuca sativa HOM05D001692 ORTHO05D003541 3.2e-28 129.8 278 36.0
GSVIVG01000623001 Vitis vinifera HOM05D001692 ORTHO05D003541 4.2e-28 129.4 277 35.0
Ah.06g187540 Amaranthus hybridus HOM05D001692 ORTHO05D003541 5.5e-28 129.0 248 39.9
SGA_v2.0_scaffold73G24332 Striga asiatica HOM05D001692 ORTHO05D003541 5.5e-28 129.0 280 33.9
MBI07_g26364_MAGBIO Magnolia biondii HOM05D001692 ORTHO05D003541 7.2e-28 128.6 244 34.4
unitig_62.g23092 Utricularia gibba HOM05D001692 ORTHO05D003541 2.1e-27 127.1 249 36.5
AUR62019704 Chenopodium quinoa HOM05D001692 ORTHO05D003541 1.4e-26 124.4 245 37.6
Lsat_1_v5_gn_5_126041 Lactuca sativa HOM05D001692 ORTHO05D003541 5.2e-26 122.5 263 35.4
ECA234G0027 Erigeron canadensis HOM05D001692 ORTHO05D003541 9.8e-25 118.2 269 34.6
HanXRQChr10g0305681 Helianthus annuus HOM05D001692 ORTHO05D003541 2.2e-24 117.1 262 33.6
EL10Ac4g08465 Beta vulgaris HOM05D001692 ORTHO05D003541 2.8e-24 116.7 276 30.4
PSO541G4432 Papaver somniferum HOM05D001692 ORTHO05D003541 5.4e-23 112.5 281 34.5
HanXRQChr12g0373531 Helianthus annuus HOM05D001692 ORTHO05D003541 3.5e-22 109.8 200 38.0
Zm00001eb203260 Zea mays HOM05D001692 ORTHO05D003541 4.5e-22 109.4 264 30.7
MBI10_g02221_MAGBIO Magnolia biondii HOM05D001692 ORTHO05D003541 1.0e-21 108.2 290 31.4
Os02g0313700 Oryza sativa ssp. japonica HOM05D001692 ORTHO05D003541 5.0e-21 105.9 254 30.3
HPP92_002947 Vanilla planifolia HOM05D001692 ORTHO05D003541 1.1e-20 104.8 233 33.9
Sc16g0007860 Simmondsia chinensis HOM05D001692 ORTHO05D003541 1.9e-20 104.0 251 30.3
PSO675G5015 Papaver somniferum HOM05D001692 ORTHO05D003541 3.2e-20 103.2 234 30.8
PSO541G5530 Papaver somniferum HOM05D001692 ORTHO05D003541 5.2e-18 95.9 234 30.8
Oeu006143.2 Olea europaea HOM05D001692 ORTHO05D003541 4.4e-17 92.8 129 41.9
MD03G1254200 Malus domestica HOM05D001692 ORTHO05D003541 9.8e-17 91.7 116 42.2
SHI27675 Sapria himalayana HOM05D001692 ORTHO05D003541 1.8e-15 87.4 276 30.1
CDE02G2341 Ceratophyllum demersum HOM05D001692 ORTHO05D003541 3.1e-15 86.7 293 26.6
PGR083G0018 Punica granatum HOM05D001692 ORTHO05D003541 1.7e-13 80.9 110 45.5
ATR0585G029 Amborella trichopoda HOM05D001692 ORTHO05D003541 8.6e-13 78.6 278 27.7
Oeu026469.1 Olea europaea HOM05D001692 ORTHO05D003541 1.1e-12 78.2 298 26.8
Zm00001eb336950 Zea mays HOM05D001692 ORTHO05D003541 4.7e-11 72.8 259 26.6
MD03G1254300 Malus domestica HOM05D001692 ORTHO05D003541 3.0e-10 70.1 114 35.1
BcaB08g35411 Brassica carinata HOM05D001692 ORTHO05D003541 2.9e-08 63.5 58 55.2
Os01g0242600 Oryza sativa ssp. japonica HOM05D001692 ORTHO05D003541 9.2e-07 58.5 255 23.1
Lj8C143T14 Lonicera japonica HOM05D001692 ORTHO05D003541 7.8e-06 55.5 209 27.8


User provided reference genes

Program Settings