Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g29028 Brassica carinata HOM05D000054 ORTHO05D002584 3.0e-120 435.6 300 100.0
BolC5t33924H Brassica oleracea HOM05D000054 ORTHO05D000171 7.1e-37 158.7 319 46.1
BcaC05g29019 Brassica carinata HOM05D000054 ORTHO05D000171 2.9e-30 136.7 65 98.5
C05p52360 Brassica napus HOM05D000054 ORTHO05D000171 2.9e-30 136.7 65 98.5
C05p52430 Brassica napus HOM05D000054 ORTHO05D000171 2.9e-30 136.7 65 98.5
A05p34640 Brassica napus HOM05D000054 ORTHO05D000171 3.8e-30 136.3 319 42.0
BolC5t33922H Brassica oleracea HOM05D000054 ORTHO05D000171 6.4e-30 135.6 65 96.9
BcaB06g25350 Brassica carinata HOM05D000054 ORTHO05D000171 1.6e-25 120.9 65 87.7
Sp3g13050 Schrenkiella parvula HOM05D000054 ORTHO05D000171 1.6e-25 120.9 65 86.2
BcaB06g25351 Brassica carinata HOM05D000054 ORTHO05D000171 2.1e-25 120.6 65 87.7
A05p34650 Brassica napus HOM05D000054 ORTHO05D000171 1.1e-24 118.2 65 81.5
BraA05t22281Z Brassica rapa HOM05D000054 ORTHO05D000171 1.1e-24 118.2 65 81.5
C03p47270 Brassica napus HOM05D000043 ORTHO05D002584 1.4e-24 117.9 63 85.7
BcaB04g20959 Brassica carinata HOM05D000054 ORTHO05D000171 2.4e-24 117.1 252 33.3
BcaC01g03913 Brassica carinata HOM05D000054 ORTHO05D000171 8.9e-24 115.2 61 86.9
A03p39000 Brassica napus HOM05D000043 ORTHO05D002584 8.9e-24 115.2 61 86.9
C01p49630 Brassica napus HOM05D000054 ORTHO05D000171 8.9e-24 115.2 344 44.5
BolC1t04919H Brassica oleracea HOM05D000054 ORTHO05D000171 8.9e-24 115.2 344 44.5
BolC3t16991H Brassica oleracea HOM05D000054 ORTHO05D000171 8.9e-24 115.2 61 86.9
BraA03t13047Z Brassica rapa HOM05D000054 ORTHO05D000171 8.9e-24 115.2 61 86.9
C05p52370 Brassica napus HOM05D000054 ORTHO05D039060 3.4e-23 113.2 64 84.4
C05p52440 Brassica napus HOM05D000054 ORTHO05D000171 4.4e-23 112.8 64 84.4
BcaC09g48450 Brassica carinata HOM05D000054 ORTHO05D000171 7.6e-23 112.1 65 76.9
BraA01t03947Z Brassica rapa HOM05D000054 ORTHO05D000171 9.9e-23 111.7 92 60.9
BcaB04g20961 Brassica carinata HOM05D000054 ORTHO05D000171 1.3e-22 111.3 92 59.8
A01p39000 Brassica napus HOM05D000054 ORTHO05D000171 6.4e-22 109.0 65 73.8
Thhalv10019958m.g Eutrema salsugineum HOM05D000054 ORTHO05D000171 1.4e-21 107.8 98 58.2
AL3G27150 Arabidopsis lyrata HOM05D000054 ORTHO05D000171 1.9e-21 107.5 65 75.4
A05p34570 Brassica napus HOM05D000054 ORTHO05D000171 2.7e-20 103.6 52 94.2
AT3G14840 Arabidopsis thaliana HOM05D000054 ORTHO05D000171 1.0e-19 101.7 65 72.3
CARHR089780 Cardamine hirsuta HOM05D000054 ORTHO05D000171 1.9e-18 97.4 65 64.6
Carub.0002s0290 Capsella rubella HOM05D000054 ORTHO05D000171 4.3e-18 96.3 60 71.7
BraA03t13049Z Brassica rapa HOM05D000054 ORTHO05D000171 2.8e-17 93.6 65 64.6
BcaB04g18862 Brassica carinata HOM05D000054 ORTHO05D000171 4.8e-17 92.8 67 67.2
Carub.0003s1450 Capsella rubella HOM05D000054 ORTHO05D000171 4.8e-17 92.8 68 67.6
BolC3t16994H Brassica oleracea HOM05D000054 ORTHO05D000171 1.8e-16 90.9 67 64.2
THA.LOC104822572 Tarenaya hassleriana HOM05D000054 ORTHO05D000171 1.8e-16 90.9 64 64.1
Aa31LG8G2050 Aethionema arabicum HOM05D000054 ORTHO05D000171 5.3e-16 89.4 61 63.9
Carub.0005s0578 Capsella rubella HOM05D000054 ORTHO05D000171 6.9e-16 89.0 65 69.2
BolC3t16995H Brassica oleracea HOM05D000054 ORTHO05D000171 1.5e-15 87.8 63 61.9
BraA03t13048Z Brassica rapa HOM05D000054 ORTHO05D000171 3.4e-15 86.7 63 66.7
BcaC05g29032 Brassica carinata HOM05D000054 ORTHO05D002584 9.9e-15 85.1 48 83.3
BcaB04g18860 Brassica carinata HOM05D000054 ORTHO05D000171 1.1e-13 81.6 61 65.6
BcaB02g07118 Brassica carinata HOM05D000054 ORTHO05D000171 7.9e-12 75.5 53 66.0
Ciclev10018908m.g Citrus clementina HOM05D000054 ORTHO05D000171 1.9e-10 70.9 64 53.1
GSVIVG01014129001 Vitis vinifera HOM05D000054 ORTHO05D002584 4.3e-10 69.7 88 43.2
Carub.0007s2537 Capsella rubella HOM05D000054 ORTHO05D000171 1.3e-09 68.2 76 56.6
Ciclev10018771m.g Citrus clementina HOM05D000054 ORTHO05D000171 2.8e-09 67.0 64 48.4
Lj3g0004211 Lotus japonicus HOM05D000054 ORTHO05D000171 3.6e-09 66.6 90 35.6
BcaB06g25354 Brassica carinata HOM05D000054 ORTHO05D002584 4.8e-09 66.2 77 55.8
GSVIVG01014110001 Vitis vinifera HOM05D000054 ORTHO05D000171 6.2e-09 65.9 63 50.8
GSVIVG01014113001 Vitis vinifera HOM05D000054 ORTHO05D000171 6.2e-09 65.9 63 50.8
arahy.Tifrunner.gnm1.ann1.4FK00S Arachis hypogaea HOM05D000054 ORTHO05D000171 1.1e-08 65.1 74 44.6
TAR626G1348 Trochodendron aralioides HOM05D000054 ORTHO05D000171 1.1e-08 65.1 71 43.7
FAN21G1158 Fragaria x ananassa HOM05D000054 ORTHO05D000171 1.4e-08 64.7 64 53.1
MBI06_g16565_MAGBIO Magnolia biondii HOM05D000054 ORTHO05D000171 1.4e-08 64.7 87 43.7
Cc05_g10830 Coffea canephora HOM05D000054 ORTHO05D000171 1.8e-08 64.3 82 45.1
GSVIVG01014117001 Vitis vinifera HOM05D000054 ORTHO05D000171 1.8e-08 64.3 62 50.0
Atru.chr2.2015 Acer truncatum HOM05D000054 ORTHO05D000171 3.1e-08 63.5 63 50.8
Gohir.A01G048800 Gossypium hirsutum HOM05D000054 ORTHO05D000171 3.1e-08 63.5 86 39.5
VMungo1080G0576 Vigna mungo HOM05D000054 ORTHO05D000171 3.1e-08 63.5 91 31.9
MBI06_g10743_MAGBIO Magnolia biondii HOM05D000054 ORTHO05D000171 4.0e-08 63.2 107 29.9
Thecc.07G129200 Theobroma cacao HOM05D000054 ORTHO05D000171 4.0e-08 63.2 74 41.9
arahy.Tifrunner.gnm1.ann1.H4GB3B Arachis hypogaea HOM05D000054 ORTHO05D000171 6.9e-08 62.4 68 44.1
Cpa.g.sc77.43 Carica papaya HOM05D000054 ORTHO05D000171 6.9e-08 62.4 78 37.2
FvH4_3g17841 Fragaria vesca HOM05D000054 ORTHO05D000171 6.9e-08 62.4 84 35.7
FAN11G0852 Fragaria x ananassa HOM05D000054 ORTHO05D000171 6.9e-08 62.4 84 35.7
ClCG11G017250 Citrullus lanatus HOM05D000054 ORTHO05D000171 9.0e-08 62.0 132 27.3
Lsat_1_v5_gn_7_102060 Lactuca sativa HOM05D000054 ORTHO05D000171 9.0e-08 62.0 85 38.8
Lj8C146G14 Lonicera japonica HOM05D000054 ORTHO05D000171 9.0e-08 62.0 73 38.4
GSVIVG01014128001 Vitis vinifera HOM05D000054 ORTHO05D000171 9.0e-08 62.0 63 46.0
arahy.Tifrunner.gnm1.ann1.LLA61B Arachis hypogaea HOM05D000054 ORTHO05D000171 1.2e-07 61.6 74 41.9
CiPaw.11G158200 Carya illinoinensis HOM05D000054 ORTHO05D000171 1.5e-07 61.2 64 50.0
Dinv18390 Davidia involucrata HOM05D000054 ORTHO05D000171 1.5e-07 61.2 81 40.7
Phvul.005G077500 Phaseolus vulgaris HOM05D000054 ORTHO05D002584 1.5e-07 61.2 78 37.2
arahy.Tifrunner.gnm1.ann1.W4IL1P Arachis hypogaea HOM05D000054 ORTHO05D000171 2.0e-07 60.8 73 38.4
Glyma.12G233100 Glycine max HOM05D000054 ORTHO05D000171 2.0e-07 60.8 78 34.6
Sed0011099 Sechium edule HOM05D000054 ORTHO05D000171 2.0e-07 60.8 86 33.7
HPP92_022984 Vanilla planifolia HOM05D000054 ORTHO05D000171 2.0e-07 60.8 71 40.8
Cc05_g10820 Coffea canephora HOM05D000054 ORTHO05D000171 2.6e-07 60.5 75 38.7
Haze_01133 Corylus avellana HOM05D000054 ORTHO05D000171 2.6e-07 60.5 60 46.7
Thhalv10012029m.g Eutrema salsugineum HOM05D000054 ORTHO05D000171 2.6e-07 60.5 91 50.5
FvH4_3g17940 Fragaria vesca HOM05D000054 ORTHO05D000171 2.6e-07 60.5 79 35.4
FAN21G2363 Fragaria x ananassa HOM05D000054 ORTHO05D000171 2.6e-07 60.5 72 37.5
TPR.G16469 Trifolium pratense HOM05D000054 ORTHO05D000171 2.6e-07 60.5 63 47.6
Ah.14g086900 Amaranthus hybridus HOM05D000054 ORTHO05D000171 3.4e-07 60.1 75 40.0
arahy.Tifrunner.gnm1.ann1.X1JR32 Arachis hypogaea HOM05D000054 ORTHO05D000171 4.5e-07 59.7 68 42.6
EL10Ac8g19866 Beta vulgaris HOM05D000054 ORTHO05D000171 4.5e-07 59.7 75 38.7
CSS0019456 Camellia sinensis var. sinensis HOM05D000054 ORTHO05D000171 4.5e-07 59.7 91 31.9
CiPaw.09G134300 Carya illinoinensis HOM05D000054 ORTHO05D000171 4.5e-07 59.7 83 36.1
Phvul.005G078000 Phaseolus vulgaris HOM05D000054 ORTHO05D002584 4.5e-07 59.7 78 35.9
Sed0026880 Sechium edule HOM05D000054 ORTHO05D000171 4.5e-07 59.7 78 33.3
Thecc.07G129300 Theobroma cacao HOM05D000054 ORTHO05D000171 4.5e-07 59.7 75 40.0
HPP92_009081 Vanilla planifolia HOM05D000085 ORTHO05D001756 4.5e-07 59.7 78 53.8
Actinidia00876 Actinidia chinensis HOM05D000054 ORTHO05D000171 5.8e-07 59.3 205 26.8
arahy.Tifrunner.gnm1.ann1.A4AH1Z Arachis hypogaea HOM05D000054 ORTHO05D000171 5.8e-07 59.3 72 38.9
CSS0037123 Camellia sinensis var. sinensis HOM05D000054 ORTHO05D000171 5.8e-07 59.3 84 32.1
Duzib213G0432 Durio zibethinus HOM05D000054 ORTHO05D000171 5.8e-07 59.3 81 39.5
Potri.001G385200 Populus trichocarpa HOM05D000054 ORTHO05D000171 5.8e-07 59.3 74 37.8
VMungo1080G1664 Vigna mungo HOM05D000054 ORTHO05D000171 5.8e-07 59.3 71 35.2
FAN11G3500 Fragaria x ananassa HOM05D000054 ORTHO05D000171 7.6e-07 58.9 75 37.3
Lalb_Chr03g0031271 Lupinus albus HOM05D000054 ORTHO05D000171 7.6e-07 58.9 78 34.6
Manes.03G092416 Manihot esculenta HOM05D000054 ORTHO05D000171 7.6e-07 58.9 77 35.1
CsaV3_4G008280 Cucumis sativus L. HOM05D000054 ORTHO05D000171 9.9e-07 58.5 88 34.1
ECA236G0246 Erigeron canadensis HOM05D000054 ORTHO05D000171 9.9e-07 58.5 71 38.0
Hma1.2p1_0050F.1_g028940 Hydrangea macrophylla HOM05D000054 ORTHO05D000171 9.9e-07 58.5 91 36.3
Manes.03G092000 Manihot esculenta HOM05D000054 ORTHO05D000171 9.9e-07 58.5 80 33.8
Sabra16G0254000 Salix brachista HOM05D000054 ORTHO05D002584 9.9e-07 58.5 74 36.5
arahy.Tifrunner.gnm1.ann1.R9RQIH Arachis hypogaea HOM05D000054 ORTHO05D002584 1.3e-06 58.2 71 38.0
CANSAT35G1492 Cannabis sativa HOM05D000054 ORTHO05D000171 1.3e-06 58.2 77 35.1
Ciclev10018686m.g Citrus clementina HOM05D000054 ORTHO05D000171 1.3e-06 58.2 93 37.6
CsaV3_4G032900 Cucumis sativus L. HOM05D000054 ORTHO05D000171 1.3e-06 58.2 71 36.6
DCAR_017590 Daucus carota HOM05D000043 ORTHO05D000223 1.3e-06 58.2 76 34.2
Medtr8g059605 Medicago truncatula HOM05D000054 ORTHO05D000171 1.3e-06 58.2 63 44.4
Medtr8g059615 Medicago truncatula HOM05D000054 ORTHO05D000171 1.3e-06 58.2 63 44.4
DCAR_021032 Daucus carota HOM05D000054 ORTHO05D002584 1.7e-06 57.8 71 38.0
Dinv15011 Davidia involucrata HOM05D000054 ORTHO05D000171 1.7e-06 57.8 66 45.5
Nn3g21029 Nelumbo nucifera HOM05D000054 ORTHO05D000171 1.7e-06 57.8 78 33.3
Phvul.005G078100 Phaseolus vulgaris HOM05D000054 ORTHO05D000171 1.7e-06 57.8 78 30.8
MELO3C025664.2 Cucumis melo HOM05D000054 ORTHO05D000171 2.2e-06 57.4 87 33.3
FAN16G1129 Fragaria x ananassa HOM05D000054 ORTHO05D000171 2.2e-06 57.4 72 36.1
Gohir.A04G044400 Gossypium hirsutum HOM05D000054 ORTHO05D000171 2.2e-06 57.4 74 36.5
Gohir.D05G338700 Gossypium hirsutum HOM05D000054 ORTHO05D000171 2.2e-06 57.4 74 36.5
Gorai.009G363600 Gossypium raimondii HOM05D000054 ORTHO05D000171 2.2e-06 57.4 74 36.5
PGR102G2061 Punica granatum HOM05D000054 ORTHO05D000171 2.2e-06 57.4 63 42.9
CAN.G411.21 Capsicum annuum HOM05D000054 ORTHO05D000171 2.9e-06 57.0 74 36.5
Eucgr.K01777 Eucalyptus grandis HOM05D000054 ORTHO05D000171 2.9e-06 57.0 107 34.6
Gohir.D01G039000 Gossypium hirsutum HOM05D000054 ORTHO05D000171 2.9e-06 57.0 59 45.8
Gohir.D01G039200 Gossypium hirsutum HOM05D000054 ORTHO05D000171 2.9e-06 57.0 59 44.1
Gohir.D01G039300 Gossypium hirsutum HOM05D000054 ORTHO05D000171 2.9e-06 57.0 59 45.8
Gorai.002G048600 Gossypium raimondii HOM05D000054 ORTHO05D000171 2.9e-06 57.0 59 44.1
Gorai.002G048800 Gossypium raimondii HOM05D000054 ORTHO05D000171 2.9e-06 57.0 59 45.8
Lalb_Chr01g0016471 Lupinus albus HOM05D000054 ORTHO05D000171 2.9e-06 57.0 74 39.2
Nn6g34448 Nelumbo nucifera HOM05D000054 ORTHO05D000171 2.9e-06 57.0 84 35.7
PGR042G3709 Punica granatum HOM05D000054 ORTHO05D000171 2.9e-06 57.0 83 38.6
Sed0009878 Sechium edule HOM05D000054 ORTHO05D000171 2.9e-06 57.0 72 34.7
Duzib213G0822 Durio zibethinus HOM05D000054 ORTHO05D000171 3.8e-06 56.6 79 38.0
Gohir.A01G048500 Gossypium hirsutum HOM05D000054 ORTHO05D000171 3.8e-06 56.6 59 44.1
TAR627G0267 Trochodendron aralioides HOM05D000054 ORTHO05D002584 3.8e-06 56.6 77 35.1
AL1G61930 Arabidopsis lyrata HOM05D000054 ORTHO05D000171 4.9e-06 56.2 107 31.8
CDE09G0568 Ceratophyllum demersum HOM05D000054 ORTHO05D000171 4.9e-06 56.2 74 37.8
DCAR_017752 Daucus carota HOM05D000054 ORTHO05D000171 4.9e-06 56.2 74 33.8
DCAR_021036 Daucus carota HOM05D000054 ORTHO05D002584 4.9e-06 56.2 79 35.4
FAN21G1294 Fragaria x ananassa HOM05D000054 ORTHO05D000171 4.9e-06 56.2 67 58.2
Gorai.002G048300 Gossypium raimondii HOM05D000054 ORTHO05D000171 4.9e-06 56.2 59 45.8
Lalb_Chr03g0031281 Lupinus albus HOM05D000054 ORTHO05D000171 4.9e-06 56.2 74 36.5
Nn3g21042 Nelumbo nucifera HOM05D000054 ORTHO05D000171 4.9e-06 56.2 95 32.6
Glyma.13G266100 Glycine max HOM05D000054 ORTHO05D000171 6.4e-06 55.8 78 33.3
Gohir.D01G039400 Gossypium hirsutum HOM05D000054 ORTHO05D000171 6.4e-06 55.8 61 42.6
Gorai.002G048900 Gossypium raimondii HOM05D000054 ORTHO05D000171 6.4e-06 55.8 61 42.6
Nn6g34438 Nelumbo nucifera HOM05D000054 ORTHO05D000171 6.4e-06 55.8 75 40.0
Duzib268G1389 Durio zibethinus HOM05D000054 ORTHO05D000171 8.4e-06 55.5 78 34.6
Psat2g027400 Pisum sativum HOM05D000054 ORTHO05D000171 8.4e-06 55.5 86 34.9
Hund21457 Selenicereus undatus HOM05D000054 ORTHO05D000171 8.4e-06 55.5 75 36.0
VMungo1080G1380 Vigna mungo HOM05D000054 ORTHO05D000171 8.4e-06 55.5 78 30.8


User provided reference genes

Program Settings