Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g28981 Brassica carinata HOM05D006733 ORTHO05D008406 4.8e-34 147.1 68 100.0
BolC5t33870H Brassica oleracea HOM05D006733 ORTHO05D008406 4.8e-34 147.1 68 100.0
A05p34080 Brassica napus HOM05D006733 ORTHO05D008406 2.6e-32 141.4 68 95.6
BraA05t22229Z Brassica rapa HOM05D006733 ORTHO05D008406 2.6e-32 141.4 68 95.6
BcaB06g29562 Brassica carinata HOM05D006733 ORTHO05D008406 4.5e-32 140.6 68 95.6
Aa31LG8G2570 Aethionema arabicum HOM05D006733 ORTHO05D008406 2.0e-27 125.2 68 83.8
BolC3t17038H Brassica oleracea HOM05D006733 ORTHO05D008406 6.3e-26 120.2 62 88.7
Thhalv10021853m.g Eutrema salsugineum HOM05D006733 ORTHO05D008406 6.3e-26 120.2 67 86.6
BcaC01g03880 Brassica carinata HOM05D006733 ORTHO05D008406 1.4e-25 119.0 62 88.7
C03p47630 Brassica napus HOM05D006733 ORTHO05D008406 1.4e-25 119.0 62 88.7
Carub.0003s1505 Capsella rubella HOM05D006733 ORTHO05D008406 2.6e-24 114.8 69 81.2
CARHR090380 Cardamine hirsuta HOM05D006733 ORTHO05D008406 5.0e-23 110.5 68 76.5
PGR031G3292 Punica granatum HOM05D006733 ORTHO05D008406 3.0e-20 101.3 64 68.8
Hma1.2p1_0885F.1_g232600 Hydrangea macrophylla HOM05D006733 ORTHO05D008406 9.7e-19 96.3 63 68.3
AL3G27820 Arabidopsis lyrata HOM05D006733 ORTHO05D008406 1.3e-18 95.9 56 85.7
Oeu024912.1 Olea europaea HOM05D006733 ORTHO05D008406 2.4e-17 91.7 65 60.0
GSVIVG01014340001 Vitis vinifera HOM05D006733 ORTHO05D008406 2.4e-17 91.7 64 62.5
PGR083G2703 Punica granatum HOM05D006733 ORTHO05D008406 3.1e-17 91.3 61 67.2
DCAR_013104 Daucus carota HOM05D006733 ORTHO05D008406 4.1e-17 90.9 63 63.5
QL08p021800 Quercus lobata HOM05D006733 ORTHO05D008406 1.2e-16 89.4 61 65.6
Lj3g0014029 Lotus japonicus HOM05D006733 ORTHO05D008406 3.5e-16 87.8 63 68.3
Eucgr.F01127 Eucalyptus grandis HOM05D006733 ORTHO05D008406 7.7e-16 86.7 61 62.3
AT3G15353 Arabidopsis thaliana HOM05D006733 ORTHO05D008406 1.0e-15 86.3 69 72.5
Cc05_g12060 Coffea canephora HOM05D006733 ORTHO05D008406 1.0e-15 86.3 61 63.9
Haze_09425 Corylus avellana HOM05D006733 ORTHO05D008406 1.7e-15 85.5 61 62.3
Lalb_Chr01g0006561 Lupinus albus HOM05D006733 ORTHO05D008406 1.7e-15 85.5 63 65.1
Nitab4.5_0005764g0010 Nicotiana tabacum HOM05D006733 ORTHO05D008406 3.8e-15 84.3 61 60.7
Oeu037948.1 Olea europaea HOM05D006733 ORTHO05D008406 6.5e-15 83.6 65 60.0
TWI38G1652 Tripterygium wilfordii HOM05D006733 ORTHO05D008406 8.5e-15 83.2 63 58.7
Actinidia12807 Actinidia chinensis HOM05D006733 ORTHO05D008406 2.5e-14 81.6 61 65.6
Nn1g04086 Nelumbo nucifera HOM05D006733 ORTHO05D008406 2.5e-14 81.6 64 59.4
Cfa020588 Carpinus fangiana HOM05D006733 ORTHO05D008406 3.2e-14 81.3 61 60.7
CiPaw.11G169300 Carya illinoinensis HOM05D006733 ORTHO05D008406 4.2e-14 80.9 61 60.7
COL.COLO4_27167 Corchorus olitorius HOM05D006733 ORTHO05D008406 4.2e-14 80.9 61 62.3
arahy.Tifrunner.gnm1.ann1.XP1NDF Arachis hypogaea HOM05D006733 ORTHO05D008406 7.2e-14 80.1 63 58.7
Aqoxy4G00811 Aquilegia oxysepala HOM05D006733 ORTHO05D008406 1.2e-13 79.3 63 58.7
MBI06_g04174_MAGBIO Magnolia biondii HOM05D006733 ORTHO05D008406 1.2e-13 79.3 66 60.6
SalBow7G1032 Salvia bowleyana HOM05D006733 ORTHO05D008406 1.2e-13 79.3 61 62.3
Sc03g0009960 Simmondsia chinensis HOM05D006733 ORTHO05D008406 1.2e-13 79.3 61 62.3
Migut.M00808 Erythranthe guttata HOM05D006733 ORTHO05D008406 1.6e-13 79.0 62 62.9
Nitab4.5_0000332g0130 Nicotiana tabacum HOM05D006733 ORTHO05D008406 1.6e-13 79.0 61 59.0
Atru.chr2.2618 Acer truncatum HOM05D006733 ORTHO05D008406 2.1e-13 78.6 61 57.4
Atru.chr2.2701 Acer truncatum HOM05D006733 ORTHO05D008406 2.1e-13 78.6 61 57.4
TWI39G1253 Tripterygium wilfordii HOM05D006733 ORTHO05D008406 2.1e-13 78.6 63 58.7
EL10Ac4g08173 Beta vulgaris HOM05D006733 ORTHO05D008406 2.7e-13 78.2 65 52.3
Ca_24272_v3 Cicer arietinum L. HOM05D006733 ORTHO05D008406 2.7e-13 78.2 63 61.9
MD11G1246800 Malus domestica HOM05D006733 ORTHO05D008406 2.7e-13 78.2 61 55.7
Sc16g0006980 Simmondsia chinensis HOM05D006733 ORTHO05D008406 2.7e-13 78.2 61 57.4
Atru.chr2.2617 Acer truncatum HOM05D006733 ORTHO05D008406 3.6e-13 77.8 62 56.5
Atru.chr2.2702 Acer truncatum HOM05D006733 ORTHO05D008406 3.6e-13 77.8 62 56.5
Medtr8g060850 Medicago truncatula HOM05D006733 ORTHO05D008406 3.6e-13 77.8 63 58.7
Hund02223 Selenicereus undatus HOM05D006733 ORTHO05D008406 4.7e-13 77.4 61 62.3
MD03G1227300 Malus domestica HOM05D006733 ORTHO05D008406 6.1e-13 77.0 61 57.4
MD03G1227500 Malus domestica HOM05D006733 ORTHO05D008406 6.1e-13 77.0 61 57.4
Glyma.06G242900 Glycine max HOM05D006733 ORTHO05D008406 1.0e-12 76.3 63 58.7
SalBow7G4025 Salvia bowleyana HOM05D006733 ORTHO05D008406 1.0e-12 76.3 61 60.7
CiPaw.12G118000 Carya illinoinensis HOM05D006733 ORTHO05D008406 1.4e-12 75.9 61 55.7
Hund22902 Selenicereus undatus HOM05D006733 ORTHO05D008406 1.4e-12 75.9 66 59.1
Os01g0200700 Oryza sativa ssp. japonica HOM05D006733 ORTHO05D008406 1.8e-12 75.5 61 62.3
Gohir.A04G030300 Gossypium hirsutum HOM05D006733 ORTHO05D008406 3.0e-12 74.7 61 59.0
Manes.15G086700 Manihot esculenta HOM05D006733 ORTHO05D008406 4.0e-12 74.3 63 55.6
Glyma.12G154300 Glycine max HOM05D006733 ORTHO05D008406 5.2e-12 73.9 63 58.7
DCAR_020986 Daucus carota HOM05D006733 ORTHO05D008406 8.8e-12 73.2 63 60.3
Gorai.009G388200 Gossypium raimondii HOM05D006733 ORTHO05D008406 8.8e-12 73.2 61 57.4
Manes.03G110500 Manihot esculenta HOM05D006733 ORTHO05D008406 8.8e-12 73.2 51 62.7
Gohir.A04G030100 Gossypium hirsutum HOM05D006733 ORTHO05D008406 1.2e-11 72.8 61 55.7
Gorai.009G388600 Gossypium raimondii HOM05D006733 ORTHO05D008406 1.2e-11 72.8 61 55.7
PSO541G4814 Papaver somniferum HOM05D006733 ORTHO05D008406 1.2e-11 72.8 64 54.7
CAN.G739.12 Capsicum annuum HOM05D006733 ORTHO05D008406 2.0e-11 72.0 61 57.4
Duzib170G0030 Durio zibethinus HOM05D006733 ORTHO05D008406 2.0e-11 72.0 61 55.7
Gohir.D01G050200 Gossypium hirsutum HOM05D006733 ORTHO05D008406 2.0e-11 72.0 63 54.0
Gohir.D05G355800 Gossypium hirsutum HOM05D006733 ORTHO05D008406 2.0e-11 72.0 61 55.7
Gohir.D05G356800 Gossypium hirsutum HOM05D006733 ORTHO05D008406 2.0e-11 72.0 61 54.1
Gorai.002G070100 Gossypium raimondii HOM05D006733 ORTHO05D008406 2.0e-11 72.0 63 54.0
Gorai.009G389000 Gossypium raimondii HOM05D006733 ORTHO05D008406 2.0e-11 72.0 61 54.1
HPP92_020054 Vanilla planifolia HOM05D006733 ORTHO05D008406 3.4e-11 71.2 59 54.2
Gohir.D05G356700 Gossypium hirsutum HOM05D006733 ORTHO05D008406 4.4e-11 70.9 61 54.1
Gorai.009G388900 Gossypium raimondii HOM05D006733 ORTHO05D008406 4.4e-11 70.9 61 54.1
PGSC0003DMG400015318 Solanum tuberosum HOM05D006733 ORTHO05D008406 4.4e-11 70.9 63 55.6
RcHm_v2.0_Chr5g0033741 Rosa chinensis HOM05D006733 ORTHO05D008406 7.5e-11 70.1 61 55.7
Duzib170G0610 Durio zibethinus HOM05D006733 ORTHO05D008406 9.8e-11 69.7 61 54.1
Nn1g04087 Nelumbo nucifera HOM05D006733 ORTHO05D008406 9.8e-11 69.7 66 54.5
Prupe.4G181500 Prunus persica HOM05D006733 ORTHO05D008406 9.8e-11 69.7 63 50.8
Gohir.D11G297700 Gossypium hirsutum HOM05D006733 ORTHO05D008406 1.7e-10 68.9 62 54.8
Gorai.007G322600 Gossypium raimondii HOM05D006733 ORTHO05D008406 1.7e-10 68.9 62 54.8
Potri.001G400100 Populus trichocarpa HOM05D006733 ORTHO05D008406 1.7e-10 68.9 63 52.4
Gohir.D05G356200 Gossypium hirsutum HOM05D006733 ORTHO05D008406 2.2e-10 68.6 61 54.1
Rhsim06G0198700 Rhododendron simsii HOM05D006733 ORTHO05D008406 4.8e-10 67.4 57 50.9
TAR629G0476 Trochodendron aralioides HOM05D006733 ORTHO05D008406 6.3e-10 67.0 45 66.7
Thecc.07G089300 Theobroma cacao HOM05D006733 ORTHO05D008406 8.3e-10 66.6 61 49.2
FAN16G0436 Fragaria x ananassa HOM05D006733 ORTHO05D008406 1.1e-09 66.2 61 52.5
Gohir.A11G284800 Gossypium hirsutum HOM05D006733 ORTHO05D008406 1.1e-09 66.2 61 54.1
Potri.011G118900 Populus trichocarpa HOM05D006733 ORTHO05D008406 1.1e-09 66.2 51 60.8
Gorai.009G388700 Gossypium raimondii HOM05D006733 ORTHO05D008406 1.4e-09 65.9 61 52.5
Aqoxy4G00809 Aquilegia oxysepala HOM05D006733 ORTHO05D008406 1.8e-09 65.5 63 52.4
arahy.Tifrunner.gnm1.ann1.KTTP1X Arachis hypogaea HOM05D006733 ORTHO05D008406 1.8e-09 65.5 60 56.7
FAN11G2570 Fragaria x ananassa HOM05D006733 ORTHO05D008406 1.8e-09 65.5 61 52.5
FAN25G0136 Fragaria x ananassa HOM05D006733 ORTHO05D008406 1.8e-09 65.5 61 52.5
vmacro11863 Vaccinium macrocarpon HOM05D006733 ORTHO05D008406 2.4e-09 65.1 61 50.8
FvH4_3g20030 Fragaria vesca HOM05D006733 ORTHO05D008406 3.1e-09 64.7 61 52.5
FAN21G3200 Fragaria x ananassa HOM05D006733 ORTHO05D008406 3.1e-09 64.7 61 52.5
arahy.Tifrunner.gnm1.ann1.W6Q2IR Arachis hypogaea HOM05D006733 ORTHO05D008406 4.1e-09 64.3 60 55.0
MBI07_g30176_MAGBIO Magnolia biondii HOM05D006733 ORTHO05D008406 9.1e-09 63.2 51 56.9
CsaV3_3G006310 Cucumis sativus L. HOM05D006733 ORTHO05D008406 1.6e-08 62.4 53 54.7
Sed0028027 Sechium edule HOM05D006733 ORTHO05D008406 1.6e-08 62.4 62 48.4
ClCG10G006940 Citrullus lanatus HOM05D006733 ORTHO05D008406 2.0e-08 62.0 53 54.7
Lj5g0017019 Lotus japonicus HOM05D006733 ORTHO05D008406 5.0e-07 57.4 48 56.2
MELO3C016513.2 Cucumis melo HOM05D006733 ORTHO05D008406 1.5e-06 55.8 61 49.2
DCAR_019551 Daucus carota HOM05D006733 ORTHO05D008406 1.5e-06 55.8 63 46.0
Oeu060552.1 Olea europaea HOM05D006733 ORTHO05D008406 2.5e-06 55.1 44 56.8
Duzib213G0299 Durio zibethinus HOM05D006733 ORTHO05D008406 9.5e-06 53.1 61 47.5


User provided reference genes

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