Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g28813 Brassica carinata HOM05D004939 ORTHO05D005843 2.1e-115 419.1 215 100.0
BraA02t08500Z Brassica rapa HOM05D004939 ORTHO05D005843 1.6e-83 313.2 241 73.4
C05p49160 Brassica napus HOM05D004939 ORTHO05D005843 5.2e-66 255.0 195 73.8
BcaC09g49204 Brassica carinata HOM05D004939 ORTHO05D005843 1.7e-61 240.0 196 71.4
BcaC03g13999 Brassica carinata HOM05D004939 ORTHO05D005843 2.1e-59 233.0 195 70.8
C06p34250 Brassica napus HOM05D004939 ORTHO05D005843 8.6e-53 211.1 225 60.9
C01p41420 Brassica napus HOM05D004939 ORTHO05D005843 4.4e-49 198.7 197 64.5
BolC1t04101H Brassica oleracea HOM05D004939 ORTHO05D005843 5.8e-49 198.4 197 64.5
BcaB06g28697 Brassica carinata HOM05D004939 ORTHO05D005843 2.9e-48 196.1 207 59.9
BolC2t07338H Brassica oleracea HOM05D004939 ORTHO05D005843 3.7e-48 195.7 195 60.5
BcaC08g45668 Brassica carinata HOM05D004939 ORTHO05D005843 8.3e-48 194.5 202 61.9
BolC6t38544H Brassica oleracea HOM05D004939 ORTHO05D005843 4.1e-47 192.2 223 56.1
C04p63070 Brassica napus HOM05D004939 ORTHO05D005843 6.6e-45 184.9 179 65.4
BolC4t27782H Brassica oleracea HOM05D004939 ORTHO05D005843 6.6e-45 184.9 179 65.4
Sp4g15900 Schrenkiella parvula HOM05D004939 ORTHO05D005843 8.1e-43 177.9 206 56.3
C04p15520 Brassica napus HOM05D004939 ORTHO05D005843 2.0e-41 173.3 207 57.0
BolC4t23123H Brassica oleracea HOM05D004939 ORTHO05D005843 2.0e-41 173.3 207 57.0
Thhalv10016779m.g Eutrema salsugineum HOM05D004939 ORTHO05D005843 1.2e-38 164.1 205 54.1
BcaC02g11440 Brassica carinata HOM05D004939 ORTHO05D005843 2.7e-38 162.9 207 54.1
BcaC02g07802 Brassica carinata HOM05D004939 ORTHO05D005843 1.3e-37 160.6 178 62.4
C02p12380 Brassica napus HOM05D004939 ORTHO05D005843 5.1e-37 158.7 175 56.6
AL4G29230 Arabidopsis lyrata HOM05D004939 ORTHO05D005843 4.3e-36 155.6 213 52.6
BraA05t20140Z Brassica rapa HOM05D004939 ORTHO05D005843 2.3e-34 149.8 207 50.7
Aa31LG9G13490 Aethionema arabicum HOM05D004939 ORTHO05D005843 5.2e-34 148.7 207 48.8
Carub.0004s1519 Capsella rubella HOM05D004939 ORTHO05D005843 3.4e-33 146.0 212 49.5
A05p11970 Brassica napus HOM05D004939 ORTHO05D005843 3.8e-32 142.5 212 50.0
CARHR127580 Cardamine hirsuta HOM05D004939 ORTHO05D005843 3.8e-32 142.5 220 46.8
BcaB02g10574 Brassica carinata HOM05D004939 ORTHO05D005843 7.1e-31 138.3 207 46.9
AT2G33560 Arabidopsis thaliana HOM05D004939 ORTHO05D005843 3.5e-30 136.0 213 47.9
BcaB05g22459 Brassica carinata HOM05D004939 ORTHO05D005843 1.2e-25 120.9 214 45.3
THA.LOC104805020 Tarenaya hassleriana HOM05D004939 ORTHO05D005843 1.5e-25 120.6 214 42.5
BcaB05g22524 Brassica carinata HOM05D004939 ORTHO05D005843 6.4e-24 115.2 140 56.4
BraA02t04781Z Brassica rapa HOM05D004939 ORTHO05D005843 5.6e-20 102.1 185 45.9
Thecc.10G149200 Theobroma cacao HOM05D004939 ORTHO05D005843 6.9e-18 95.1 207 37.7
Gohir.D05G283802 Gossypium hirsutum HOM05D004939 ORTHO05D005843 4.5e-17 92.4 208 38.0
Gorai.009G298300 Gossypium raimondii HOM05D004939 ORTHO05D005843 4.5e-17 92.4 208 38.0
Gohir.A05G282600 Gossypium hirsutum HOM05D004939 ORTHO05D005843 7.6e-17 91.7 208 37.5
Potri.005G258300 Populus trichocarpa HOM05D004939 ORTHO05D005843 7.6e-17 91.7 209 36.8
Hma1.2p1_0914F.1_g236160 Hydrangea macrophylla HOM05D004939 ORTHO05D005843 9.9e-17 91.3 209 37.3
Gohir.D05G283800 Gossypium hirsutum HOM05D004939 ORTHO05D005843 2.2e-16 90.1 208 37.5
CiPaw.07G131300 Carya illinoinensis HOM05D004939 ORTHO05D005843 2.9e-16 89.7 209 36.8
CSS0014437 Camellia sinensis var. sinensis HOM05D004939 ORTHO05D005843 3.8e-16 89.4 209 36.4
Ciclev10001515m.g Citrus clementina HOM05D004939 ORTHO05D005843 3.8e-16 89.4 211 36.5
QL02p016036 Quercus lobata HOM05D004939 ORTHO05D005843 3.8e-16 89.4 207 36.7
TAR381G1514 Trochodendron aralioides HOM05D000924 ORTHO05D001209 4.9e-16 89.0 120 47.5
A05p29890 Brassica napus HOM05D004939 ORTHO05D005843 6.4e-16 88.6 45 97.8
BolC8t46884H Brassica oleracea HOM05D004939 ORTHO05D005843 6.4e-16 88.6 45 97.8
RcHm_v2.0_Chr7g0217371 Rosa chinensis HOM05D004939 ORTHO05D005843 6.4e-16 88.6 207 35.3
Lj4A813T64 Lonicera japonica HOM05D004939 ORTHO05D005843 8.4e-16 88.2 116 44.8
Sabra05G0200000 Salix brachista HOM05D004939 ORTHO05D005843 1.4e-15 87.4 205 36.6
Actinidia37902 Actinidia chinensis HOM05D004939 ORTHO05D005843 5.4e-15 85.5 211 35.5
FvH4_5g26460 Fragaria vesca HOM05D004939 ORTHO05D005843 5.4e-15 85.5 117 45.3
FAN04G1628 Fragaria x ananassa HOM05D004939 ORTHO05D005843 5.4e-15 85.5 117 46.2
FAN18G1404 Fragaria x ananassa HOM05D004939 ORTHO05D005843 5.4e-15 85.5 117 45.3
Eucgr.F03614 Eucalyptus grandis HOM05D004939 ORTHO05D005843 7.1e-15 85.1 117 45.3
FAN13G2929 Fragaria x ananassa HOM05D004939 ORTHO05D005843 7.1e-15 85.1 118 46.6
PGR031G2869 Punica granatum HOM05D004939 ORTHO05D005843 9.3e-15 84.7 206 35.4
Prupe.5G002900 Prunus persica HOM05D004939 ORTHO05D005843 1.2e-14 84.3 214 34.1
CSS0031643 Camellia sinensis var. sinensis HOM05D004939 ORTHO05D005843 1.6e-14 84.0 121 46.3
Manes.05G129700 Manihot esculenta HOM05D004939 ORTHO05D005843 1.6e-14 84.0 211 36.5
Potri.002G002900 Populus trichocarpa HOM05D004939 ORTHO05D005843 1.6e-14 84.0 209 35.9
GSVIVG01013446001 Vitis vinifera HOM05D004939 ORTHO05D005843 1.6e-14 84.0 102 50.0
Duzib128G1725 Durio zibethinus HOM05D004939 ORTHO05D005843 2.7e-14 83.2 206 34.0
Cfa014153 Carpinus fangiana HOM05D004939 ORTHO05D005843 3.5e-14 82.8 98 52.0
FAN08G1940 Fragaria x ananassa HOM05D004939 ORTHO05D005843 3.5e-14 82.8 145 41.4
Hma1.2p1_0914F.1_g236170 Hydrangea macrophylla HOM05D004939 ORTHO05D005843 6.0e-14 82.0 70 61.4
Ca_12499_v3 Cicer arietinum L. HOM05D004939 ORTHO05D005843 7.9e-14 81.6 202 32.2
TPR.G22378 Trifolium pratense HOM05D004939 ORTHO05D005843 7.9e-14 81.6 123 39.0
arahy.Tifrunner.gnm1.ann1.6I9FYE Arachis hypogaea HOM05D004939 ORTHO05D005843 1.0e-13 81.3 205 34.6
ECA238G2856 Erigeron canadensis HOM05D004939 ORTHO05D005843 1.0e-13 81.3 210 33.8
Nn5g31070 Nelumbo nucifera HOM05D004939 ORTHO05D005843 1.0e-13 81.3 209 35.4
arahy.Tifrunner.gnm1.ann1.V9NZM2 Arachis hypogaea HOM05D004939 ORTHO05D005843 1.3e-13 80.9 205 35.1
Dinv23346 Davidia involucrata HOM05D004939 ORTHO05D005843 1.8e-13 80.5 162 38.9
DCAR_023017 Daucus carota HOM05D004939 ORTHO05D005843 3.0e-13 79.7 73 54.8
EL10Ac1g01845 Beta vulgaris HOM05D004939 ORTHO05D005843 3.9e-13 79.3 102 47.1
Sed0003879 Sechium edule HOM05D004939 ORTHO05D005843 3.9e-13 79.3 180 34.4
Cpa.g.sc36.110 Carica papaya HOM05D004939 ORTHO05D005843 6.7e-13 78.6 70 58.6
Medtr1g035090 Medicago truncatula HOM05D004939 ORTHO05D005843 1.1e-12 77.8 115 40.9
Hund05067 Selenicereus undatus HOM05D004939 ORTHO05D005843 1.1e-12 77.8 129 39.5
Atru.chr13.32 Acer truncatum HOM05D004939 ORTHO05D005843 1.9e-12 77.0 204 34.8
PSO017G2996 Papaver somniferum HOM05D004939 ORTHO05D005843 1.9e-12 77.0 208 32.2
PSO170G6093 Papaver somniferum HOM05D004939 ORTHO05D005843 1.9e-12 77.0 208 32.2
Lalb_Chr10g0095291 Lupinus albus HOM05D004939 ORTHO05D005843 2.5e-12 76.6 202 33.7
Cc10_g00160 Coffea canephora HOM05D004939 ORTHO05D005843 7.4e-12 75.1 209 31.6
Nitab4.5_0000464g0110 Nicotiana tabacum HOM05D004939 ORTHO05D005843 7.4e-12 75.1 177 34.5
ATR0605G152 Amborella trichopoda HOM05D004939 ORTHO05D005843 9.6e-12 74.7 142 35.2
Aqoxy6G03042 Aquilegia oxysepala HOM05D004939 ORTHO05D005843 9.6e-12 74.7 207 31.9
CsaV3_4G037720 Cucumis sativus L. HOM05D004939 ORTHO05D005843 9.6e-12 74.7 207 32.9
Lalb_Chr17g0338141 Lupinus albus HOM05D004939 ORTHO05D005843 9.6e-12 74.7 203 33.5
Glyma.07G159700 Glycine max HOM05D004939 ORTHO05D005843 1.6e-11 73.9 204 33.3
Lsat_1_v5_gn_2_3201 Lactuca sativa HOM05D004939 ORTHO05D005843 1.6e-11 73.9 100 45.0
MBI04_g18018_MAGBIO Magnolia biondii HOM05D004939 ORTHO05D005843 1.6e-11 73.9 116 43.1
HanXRQChr14g0427951 Helianthus annuus HOM05D004939 ORTHO05D005843 2.1e-11 73.6 204 33.3
AUR62035188 Chenopodium quinoa HOM05D004939 ORTHO05D005843 2.8e-11 73.2 101 45.5
Peaxi162Scf00385g00719 Petunia axillaris HOM05D004939 ORTHO05D005843 2.8e-11 73.2 210 32.4
CANSAT11G2529 Cannabis sativa HOM05D004939 ORTHO05D005843 3.6e-11 72.8 109 44.0
ClCG11G019130 Citrullus lanatus HOM05D004939 ORTHO05D005843 6.2e-11 72.0 70 54.3
TWI56G0687 Tripterygium wilfordii HOM05D004939 ORTHO05D005843 8.1e-11 71.6 212 32.5
Migut.N02996 Erythranthe guttata HOM05D004939 ORTHO05D005843 1.1e-10 71.2 160 35.0
Glyma.20G006600 Glycine max HOM05D004939 ORTHO05D005843 1.1e-10 71.2 204 32.8
MSTRG.22074 Avicennia marina HOM05D004939 ORTHO05D005843 1.4e-10 70.9 102 43.1
Sc02g0009340 Simmondsia chinensis HOM05D004939 ORTHO05D005843 1.4e-10 70.9 121 39.7
MELO3C017066.2 Cucumis melo HOM05D004939 ORTHO05D005843 2.4e-10 70.1 212 33.0
Lj2g0017318 Lotus japonicus HOM05D004939 ORTHO05D005843 3.1e-10 69.7 201 31.3
CAN.G1330.25 Capsicum annuum HOM05D004939 ORTHO05D005843 4.0e-10 69.3 173 31.8
CDE05G0313 Ceratophyllum demersum HOM05D004939 ORTHO05D005843 4.0e-10 69.3 134 38.1
Sopen04g036540 Solanum pennellii HOM05D004939 ORTHO05D005843 5.3e-10 68.9 168 33.9
PGSC0003DMG400010009 Solanum tuberosum HOM05D004939 ORTHO05D005843 5.3e-10 68.9 178 33.7
Solyc04g082900.4 Solanum lycopersicum HOM05D004939 ORTHO05D005843 6.9e-10 68.6 211 30.8
Sabra02G0001700 Salix brachista HOM05D004939 ORTHO05D005843 1.2e-09 67.8 83 48.2
Zm00001eb236510 Zea mays HOM05D004939 ORTHO05D005843 1.2e-09 67.8 93 43.0
Phvul.003G009000 Phaseolus vulgaris HOM05D004939 ORTHO05D005843 1.5e-09 67.4 108 39.8
VMungo1215G1457 Vigna mungo HOM05D004939 ORTHO05D005843 1.5e-09 67.4 205 31.2
Psat6g131960 Pisum sativum HOM05D004939 ORTHO05D005843 2.0e-09 67.0 84 44.0
Os02g0193600 Oryza sativa ssp. japonica HOM05D004939 ORTHO05D005843 1.3e-08 64.3 210 32.4
unitig_85.g27224 Utricularia gibba HOM05D004939 ORTHO05D005843 1.3e-08 64.3 208 28.8
SalBow6G2808 Salvia bowleyana HOM05D004939 ORTHO05D005843 2.2e-08 63.5 120 36.7
Haze_22877 Corylus avellana HOM05D004939 ORTHO05D005843 4.9e-08 62.4 192 33.3
HPP92_020523 Vanilla planifolia HOM05D004939 ORTHO05D005843 1.9e-07 60.5 144 34.7
SGA_v2.0_scaffold227G43179 Striga asiatica HOM05D004939 ORTHO05D005843 2.4e-07 60.1 254 28.0
Rhsim06G0001700 Rhododendron simsii HOM05D004939 ORTHO05D005843 2.1e-06 57.0 44 59.1
SEGI_14150 Sequoiadendron giganteum HOM05D004939 ORTHO05D005843 4.6e-06 55.8 68 42.6


User provided reference genes

Program Settings