Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g28735 Brassica carinata HOM05D007021 ORTHO05D008916 1.3e-84 316.6 189 100.0
BolC5t33573H Brassica oleracea HOM05D007021 ORTHO05D008916 1.3e-84 316.6 189 100.0
C05p48360 Brassica napus HOM05D007021 ORTHO05D008916 4.8e-84 314.7 189 91.5
A05p31870 Brassica napus HOM05D007021 ORTHO05D008916 1.6e-79 299.7 189 95.2
BraA05t22019Z Brassica rapa HOM05D007021 ORTHO05D008916 1.6e-79 299.7 189 95.2
BcaB06g25855 Brassica carinata HOM05D007021 ORTHO05D008916 6.6e-73 277.7 189 81.0
Thhalv10021570m.g Eutrema salsugineum HOM05D007021 ORTHO05D008916 3.6e-71 271.9 192 80.2
Sp3g16050 Schrenkiella parvula HOM05D007021 ORTHO05D008916 2.3e-70 269.2 196 81.1
CARHR093260 Cardamine hirsuta HOM05D007021 ORTHO05D008916 2.9e-68 262.3 189 79.9
Carub.0003s1766 Capsella rubella HOM05D007021 ORTHO05D008916 2.5e-64 249.2 192 82.8
AL3G31100 Arabidopsis lyrata HOM05D007021 ORTHO05D008916 2.8e-63 245.7 192 82.8
AT3G17930 Arabidopsis thaliana HOM05D007021 ORTHO05D008916 8.0e-63 244.2 192 81.8
Aa31LG8G4800 Aethionema arabicum HOM05D007021 ORTHO05D008916 9.2e-59 230.7 188 70.7
THA.LOC104821829 Tarenaya hassleriana HOM05D007021 ORTHO05D008916 1.4e-46 190.3 191 57.6
QL10p030610 Quercus lobata HOM05D007021 ORTHO05D008916 6.8e-46 188.0 204 56.4
Lalb_Chr05g0221591 Lupinus albus HOM05D007021 ORTHO05D008916 4.4e-45 185.3 112 82.1
Psat7g001280 Pisum sativum HOM05D007021 ORTHO05D008916 4.4e-45 185.3 109 84.4
CANSAT80G0297 Cannabis sativa HOM05D007021 ORTHO05D008916 1.7e-44 183.3 106 86.8
CANSAT80G1746 Cannabis sativa HOM05D007021 ORTHO05D008916 1.7e-44 183.3 106 86.8
Migut.I00268 Erythranthe guttata HOM05D007021 ORTHO05D008916 2.9e-44 182.6 112 82.1
PGR044G2095 Punica granatum HOM05D007021 ORTHO05D008916 2.9e-44 182.6 202 54.5
Lj4g0002555 Lotus japonicus HOM05D007021 ORTHO05D008916 3.8e-44 182.2 108 83.3
Potri.015G036500 Populus trichocarpa HOM05D007021 ORTHO05D008916 3.8e-44 182.2 107 86.0
MD06G1228200 Malus domestica HOM05D007021 ORTHO05D008916 4.9e-44 181.8 111 81.1
Thecc.03G058600 Theobroma cacao HOM05D007021 ORTHO05D008916 6.4e-44 181.4 106 85.8
GSVIVG01008459001 Vitis vinifera HOM05D007021 ORTHO05D008916 6.4e-44 181.4 113 80.5
Sabra15G0029900 Salix brachista HOM05D007021 ORTHO05D008916 1.1e-43 180.6 110 81.8
Dinv18013 Davidia involucrata HOM05D007021 ORTHO05D008916 1.9e-43 179.9 109 82.6
FAN04G2374 Fragaria x ananassa HOM05D007021 ORTHO05D008916 1.9e-43 179.9 109 83.5
Glyma.08G055300 Glycine max HOM05D007021 ORTHO05D008916 1.9e-43 179.9 110 81.8
RcHm_v2.0_Chr7g0178211 Rosa chinensis HOM05D007021 ORTHO05D008916 1.9e-43 179.9 111 81.1
FvH4_5g17480 Fragaria vesca HOM05D007021 ORTHO05D008916 2.4e-43 179.5 109 82.6
FAN08G1321 Fragaria x ananassa HOM05D007021 ORTHO05D008916 2.4e-43 179.5 109 82.6
FAN18G1853 Fragaria x ananassa HOM05D007021 ORTHO05D008916 2.4e-43 179.5 109 82.6
HanXRQChr15g0486591 Helianthus annuus HOM05D007021 ORTHO05D008916 3.2e-43 179.1 106 84.0
Manes.06G004800 Manihot esculenta HOM05D007021 ORTHO05D008916 3.2e-43 179.1 109 82.6
Atru.chr9.1670 Acer truncatum HOM05D007021 ORTHO05D008916 4.2e-43 178.7 107 81.3
arahy.Tifrunner.gnm1.ann1.I2I16V Arachis hypogaea HOM05D007021 ORTHO05D008916 4.2e-43 178.7 107 83.2
Actinidia18882 Actinidia chinensis HOM05D004562 ORTHO05D005435 5.4e-43 178.3 108 82.4
Aqoxy1G00082 Aquilegia oxysepala HOM05D007021 ORTHO05D008916 5.4e-43 178.3 110 81.8
Prupe.5G234700 Prunus persica HOM05D007021 ORTHO05D008916 7.1e-43 177.9 111 78.4
ECA232G1431 Erigeron canadensis HOM05D000006 ORTHO05D000091 9.2e-43 177.6 109 80.7
FAN13G1201 Fragaria x ananassa HOM05D007021 ORTHO05D008916 9.2e-43 177.6 109 82.6
CSS0017706 Camellia sinensis var. sinensis HOM05D007021 ORTHO05D008916 1.2e-42 177.2 107 83.2
Cfa019639 Carpinus fangiana HOM05D007021 ORTHO05D008916 1.2e-42 177.2 111 78.4
Cc04_g06110 Coffea canephora HOM05D007021 ORTHO05D008916 1.2e-42 177.2 107 83.2
PGSC0003DMG400022612 Solanum tuberosum HOM05D007021 ORTHO05D008916 1.2e-42 177.2 192 53.6
Cpa.g.sc3.381 Carica papaya HOM05D007021 ORTHO05D008916 1.6e-42 176.8 108 79.6
Glyma.05G246900 Glycine max HOM05D007021 ORTHO05D008916 1.6e-42 176.8 105 84.8
Oeu046158.1 Olea europaea HOM05D007021 ORTHO05D008916 1.6e-42 176.8 110 80.9
VMungo0251G3404 Vigna mungo HOM05D007021 ORTHO05D008916 1.6e-42 176.8 110 80.0
arahy.Tifrunner.gnm1.ann1.2FQ1SS Arachis hypogaea HOM05D007021 ORTHO05D008916 2.1e-42 176.4 107 82.2
Solyc05g006440.4 Solanum lycopersicum HOM05D007021 ORTHO05D008916 2.1e-42 176.4 108 80.6
CAN.G159.4 Capsicum annuum HOM05D007021 ORTHO05D008916 2.7e-42 176.0 107 82.2
CiPaw.16G096000 Carya illinoinensis HOM05D007021 ORTHO05D008916 2.7e-42 176.0 107 80.4
Gohir.A09G174900 Gossypium hirsutum HOM05D007021 ORTHO05D008916 2.7e-42 176.0 107 81.3
Gohir.D09G170185 Gossypium hirsutum HOM05D007021 ORTHO05D008916 2.7e-42 176.0 107 81.3
Gorai.006G191500 Gossypium raimondii HOM05D007021 ORTHO05D008916 2.7e-42 176.0 107 81.3
Hma1.2p1_0163F.1_g073000 Hydrangea macrophylla HOM05D007021 ORTHO05D008916 3.5e-42 175.6 108 81.5
HPP92_019433 Vanilla planifolia HOM05D007021 ORTHO05D008916 3.5e-42 175.6 107 81.3
COL.COLO4_28897 Corchorus olitorius HOM05D007021 ORTHO05D008916 4.6e-42 175.3 107 82.2
ClCG06G014200 Citrullus lanatus HOM05D007021 ORTHO05D008916 6.0e-42 174.9 112 78.6
Rhsim12G0138000 Rhododendron simsii HOM05D007021 ORTHO05D008916 6.0e-42 174.9 108 80.6
Sopen05g002370 Solanum pennellii HOM05D007021 ORTHO05D008916 6.0e-42 174.9 108 79.6
CsaV3_1G004470 Cucumis sativus L. HOM05D007021 ORTHO05D008916 7.8e-42 174.5 110 79.1
Lj9A418T22 Lonicera japonica HOM05D007021 ORTHO05D008916 7.8e-42 174.5 109 79.8
Zm00001eb150510 Zea mays HOM05D007021 ORTHO05D008916 7.8e-42 174.5 167 58.1
Os01g0805200 Oryza sativa ssp. japonica HOM05D007021 ORTHO05D008916 1.0e-41 174.1 109 79.8
Ciclev10009503m.g Citrus clementina HOM05D007021 ORTHO05D008916 1.3e-41 173.7 108 80.6
Nitab4.5_0002312g0020 Nicotiana tabacum HOM05D007021 ORTHO05D008916 2.3e-41 172.9 107 80.4
Nitab4.5_0004119g0020 Nicotiana tabacum HOM05D007021 ORTHO05D008916 2.3e-41 172.9 107 80.4
TPR.G1394 Trifolium pratense HOM05D007021 ORTHO05D008916 2.3e-41 172.9 108 78.7
Nn7g37125 Nelumbo nucifera HOM05D007021 ORTHO05D008916 3.0e-41 172.6 113 76.1
Sed0001257 Sechium edule HOM05D007021 ORTHO05D008916 3.9e-41 172.2 110 78.2
Eucgr.K02276 Eucalyptus grandis HOM05D007021 ORTHO05D008916 5.1e-41 171.8 110 80.0
Gorai.003G035100 Gossypium raimondii HOM05D007021 ORTHO05D008916 6.6e-41 171.4 107 80.4
Phvul.002G331000 Phaseolus vulgaris HOM05D007021 ORTHO05D008916 6.6e-41 171.4 110 74.5
TWI81G0868 Tripterygium wilfordii HOM05D007021 ORTHO05D008916 6.6e-41 171.4 106 79.2
MSTRG.11303 Avicennia marina HOM05D007021 ORTHO05D008916 1.1e-40 170.6 109 77.1
Lsat_1_v5_gn_8_115881 Lactuca sativa HOM05D007021 ORTHO05D008916 1.1e-40 170.6 106 80.2
TAR623G0728 Trochodendron aralioides HOM05D007021 ORTHO05D008916 1.1e-40 170.6 108 77.8
MELO3C017374.2 Cucumis melo HOM05D007021 ORTHO05D008916 1.9e-40 169.9 110 77.3
Gorai.004G090100 Gossypium raimondii HOM05D007021 ORTHO05D008916 1.9e-40 169.9 107 78.5
Gohir.D03G033500 Gossypium hirsutum HOM05D007021 ORTHO05D008916 2.5e-40 169.5 107 78.5
Sc04g0004860 Simmondsia chinensis HOM05D007021 ORTHO05D008916 2.5e-40 169.5 103 81.6
Gohir.D08G085600 Gossypium hirsutum HOM05D007021 ORTHO05D008916 3.3e-40 169.1 107 78.5
MBI13_g41749_MAGBIO Magnolia biondii HOM05D007021 ORTHO05D008916 4.3e-40 168.7 106 77.4
Medtr8g107430 Medicago truncatula HOM05D007021 ORTHO05D008916 4.3e-40 168.7 105 79.0
PSO384G2008 Papaver somniferum HOM05D007021 ORTHO05D008916 5.6e-40 168.3 107 78.5
unitig_899.g15339 Utricularia gibba HOM05D007021 ORTHO05D008916 7.3e-40 167.9 106 79.2
PSO339G6055 Papaver somniferum HOM05D007021 ORTHO05D008916 1.2e-39 167.2 107 77.6
Hund08707 Selenicereus undatus HOM05D007021 ORTHO05D008916 1.6e-39 166.8 107 74.8
ATR1096G089 Amborella trichopoda HOM05D007021 ORTHO05D008916 4.7e-39 165.2 113 71.7
Haze_18883 Corylus avellana HOM05D007021 ORTHO05D008916 2.4e-38 162.9 126 67.5
SEGI_41594 Sequoiadendron giganteum HOM05D007021 ORTHO05D008916 1.2e-37 160.6 109 72.5
CDE04G1339 Ceratophyllum demersum HOM05D000015 ORTHO05D002445 3.4e-37 159.1 96 79.2
Pp3c5_23310 Physcomitrium patens HOM05D007021 ORTHO05D008916 1.3e-36 157.1 106 69.8
AagrBONN_evm.TU.Sc2ySwM_117.710 Anthoceros agrestis HOM05D007021 ORTHO05D008916 3.8e-36 155.6 109 68.8
AagrBONN_evm.TU.Sc2ySwM_340.579 Anthoceros agrestis HOM05D007021 ORTHO05D008916 3.8e-36 155.6 109 68.8
EL10Ac8g19152 Beta vulgaris HOM05D007021 ORTHO05D008916 4.9e-36 155.2 105 72.4
Mapoly0023s0040 Marchantia polymorpha HOM05D007021 ORTHO05D008916 7.1e-35 151.4 107 68.2
SMO353G0175 Selaginella moellendorffii HOM05D007021 ORTHO05D008916 3.0e-33 146.0 106 66.0
CDE07G1635 Ceratophyllum demersum HOM05D007021 ORTHO05D008916 1.6e-31 140.2 84 78.6
Gohir.1Z049463 Gossypium hirsutum HOM05D007021 ORTHO05D008916 4.5e-29 132.1 107 68.2
CBR_g48186 Chara braunii HOM05D007021 ORTHO05D008916 5.8e-29 131.7 112 57.1
DCAR_014390 Daucus carota HOM05D007021 ORTHO05D008916 2.2e-28 129.8 79 82.3
Peaxi162Scf00828g00016 Petunia axillaris HOM05D007021 ORTHO05D008916 1.4e-27 127.1 78 80.8
Duzib068G0088 Durio zibethinus HOM05D007021 ORTHO05D008916 5.4e-27 125.2 78 79.5
Cre01.g000850 Chlamydomonas reinhardtii HOM05D007021 ORTHO05D008916 3.0e-25 119.4 104 56.7
AUR62025165 Chenopodium quinoa HOM05D007021 ORTHO05D008916 5.1e-25 118.6 76 75.0
AUR62029014 Chenopodium quinoa HOM05D007021 ORTHO05D008916 5.1e-25 118.6 76 75.0
MD14G1237400 Malus domestica HOM05D007021 ORTHO05D008916 4.6e-18 95.5 53 83.0
Oeu010907.1 Olea europaea HOM05D007021 ORTHO05D008916 1.0e-17 94.4 53 83.0
MCO16G182 Micromonas commoda HOM05D007021 ORTHO05D008916 1.8e-17 93.6 79 58.2
PRCOL_00000692 Prasinoderma coloniale HOM05D007021 ORTHO05D008916 5.1e-17 92.0 106 46.2


User provided reference genes

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