Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g28685 Brassica carinata HOM05D004345 ORTHO05D005192 6.7e-159 563.9 277 100.0
BolC5t33532H Brassica oleracea HOM05D004345 ORTHO05D005192 1.1e-124 450.3 236 94.5
BolC5t33472H Brassica oleracea HOM05D004345 ORTHO05D005192 1.1e-121 440.3 278 82.0
BraA05t21971Z Brassica rapa HOM05D004345 ORTHO05D005192 1.5e-121 439.9 278 81.3
A05p31330 Brassica napus HOM05D004345 ORTHO05D005192 4.3e-121 438.3 278 80.9
C05p47630 Brassica napus HOM05D004345 ORTHO05D005192 2.1e-120 436.0 278 81.7
Sp3g16450 Schrenkiella parvula HOM05D004345 ORTHO05D005192 7.8e-115 417.5 280 76.4
C05p47510 Brassica napus HOM05D004345 ORTHO05D005192 6.6e-114 414.5 267 80.9
BcaB01g01503 Brassica carinata HOM05D004345 ORTHO05D005192 8.6e-114 414.1 277 77.3
Thhalv10020051m.g Eutrema salsugineum HOM05D004345 ORTHO05D005192 7.1e-108 394.4 279 71.7
AL3G31560 Arabidopsis lyrata HOM05D004345 ORTHO05D005192 7.1e-100 367.9 279 68.1
Thhalv10003730m.g Eutrema salsugineum HOM05D004345 ORTHO05D005192 6.0e-99 364.8 276 66.3
Carub.0003s1810 Capsella rubella HOM05D004345 ORTHO05D005192 2.5e-97 359.4 279 66.7
Aa31LG8G3600 Aethionema arabicum HOM05D004345 ORTHO05D005192 4.3e-97 358.6 279 67.7
AT3G18310 Arabidopsis thaliana HOM05D004345 ORTHO05D005192 4.3e-97 358.6 279 66.7
CARHR093680 Cardamine hirsuta HOM05D004345 ORTHO05D005192 1.9e-89 333.2 284 64.4
THA.LOC104803578 Tarenaya hassleriana HOM05D004345 ORTHO05D005192 6.0e-67 258.5 272 53.3
Cfa020657 Carpinus fangiana HOM05D004345 ORTHO05D005192 3.8e-61 239.2 289 48.1
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 8.5e-61 238.0 288 47.2
Manes.14G172500 Manihot esculenta HOM05D004345 ORTHO05D005192 1.1e-60 237.7 289 48.1
CiPaw.16G081600 Carya illinoinensis HOM05D004345 ORTHO05D005192 1.6e-59 233.8 289 47.8
CiPaw.12G040000 Carya illinoinensis HOM05D004345 ORTHO05D005192 6.1e-59 231.9 290 46.2
CiPaw.12G046900 Carya illinoinensis HOM05D004345 ORTHO05D005192 1.9e-57 226.9 266 50.0
MD04G1026400 Malus domestica HOM05D004345 ORTHO05D005192 9.7e-57 224.6 287 44.6
Sabra12G0028400 Salix brachista HOM05D004345 ORTHO05D005192 9.7e-57 224.6 289 45.0
Dinv35989 Davidia involucrata HOM05D004345 ORTHO05D004155 2.8e-56 223.0 286 45.1
Gohir.A11G329500 Gossypium hirsutum HOM05D004345 ORTHO05D005192 4.8e-56 222.2 287 46.3
QL09p016785 Quercus lobata HOM05D004345 ORTHO05D005192 4.8e-56 222.2 289 47.4
Dinv36001 Davidia involucrata HOM05D004345 ORTHO05D005192 1.1e-55 221.1 286 44.8
QL07p000534 Quercus lobata HOM05D004345 ORTHO05D005192 1.1e-55 221.1 289 47.1
Potri.012G041300 Populus trichocarpa HOM05D004345 ORTHO05D005192 3.1e-55 219.5 289 44.3
Gohir.D11G348700 Gossypium hirsutum HOM05D004345 ORTHO05D005192 1.2e-54 217.6 287 45.6
Gorai.007G379000 Gossypium raimondii HOM05D004345 ORTHO05D005192 1.5e-54 217.2 287 45.6
QL04p019450 Quercus lobata HOM05D004345 ORTHO05D005192 2.6e-54 216.5 289 45.0
Prupe.2G050600 Prunus persica HOM05D004345 ORTHO05D005192 4.5e-54 215.7 288 43.1
RcHm_v2.0_Chr7g0216331 Rosa chinensis HOM05D004345 ORTHO05D005192 2.2e-53 213.4 297 41.4
TWI60G1145 Tripterygium wilfordii HOM05D004345 ORTHO05D005192 2.2e-53 213.4 271 45.4
CANSAT21G1743 Cannabis sativa HOM05D004345 ORTHO05D005192 3.8e-53 212.6 289 39.4
Ciclev10000213m.g Citrus clementina HOM05D004345 ORTHO05D005192 5.0e-53 212.2 294 44.2
FAN04G0730 Fragaria x ananassa HOM05D004345 ORTHO05D005192 1.9e-52 210.3 300 42.3
FvH4_5g25850 Fragaria vesca HOM05D004345 ORTHO05D005192 3.2e-52 209.5 300 42.0
FAN18G0597 Fragaria x ananassa HOM05D004345 ORTHO05D005192 3.2e-52 209.5 300 42.0
FAN13G0999 Fragaria x ananassa HOM05D004345 ORTHO05D005192 9.4e-52 208.0 300 42.0
Actinidia34666 Actinidia chinensis HOM05D004345 ORTHO05D005192 4.6e-51 205.7 286 42.7
CiPaw.12G047000 Carya illinoinensis HOM05D004345 ORTHO05D005192 3.9e-50 202.6 263 47.9
Nn1g01729 Nelumbo nucifera HOM05D004345 ORTHO05D005192 3.3e-49 199.5 291 42.6
CSS0030547 Camellia sinensis var. sinensis HOM05D004345 ORTHO05D005192 3.7e-48 196.1 285 40.7
Lj8C411T10 Lonicera japonica HOM05D004345 ORTHO05D005192 1.2e-46 191.0 285 40.7
TPR.G10330 Trifolium pratense HOM05D004345 ORTHO05D005192 1.0e-45 188.0 289 39.4
Sed0027926 Sechium edule HOM05D004345 ORTHO05D005192 1.3e-45 187.6 288 39.6
Lj5g0026700 Lotus japonicus HOM05D004345 ORTHO05D005192 2.9e-45 186.4 290 40.7
Glyma.10G030100 Glycine max HOM05D004345 ORTHO05D005192 3.8e-45 186.0 288 40.3
VMungo1127G1998 Vigna mungo HOM05D004345 ORTHO05D005192 5.0e-45 185.7 292 39.7
CsaV3_1G046170 Cucumis sativus L. HOM05D004345 ORTHO05D005192 6.5e-45 185.3 291 39.9
MELO3C021732.2 Cucumis melo HOM05D004345 ORTHO05D005192 8.5e-45 184.9 287 39.7
vmacro01076 Vaccinium macrocarpon HOM05D004345 ORTHO05D005192 8.5e-45 184.9 286 40.2
Rhsim12G0029000 Rhododendron simsii HOM05D004345 ORTHO05D005192 1.9e-44 183.7 284 40.1
Ca_09724_v3 Cicer arietinum L. HOM05D004345 ORTHO05D005192 9.4e-44 181.4 299 38.5
Duzib116G0224 Durio zibethinus HOM05D004345 ORTHO05D005192 1.2e-43 181.0 294 39.1
Psat5g128760 Pisum sativum HOM05D004345 ORTHO05D005192 2.1e-43 180.3 289 37.7
Lalb_Chr21g0307461 Lupinus albus HOM05D004345 ORTHO05D005192 2.7e-43 179.9 292 37.7
Medtr3g069120 Medicago truncatula HOM05D004345 ORTHO05D005192 2.7e-43 179.9 288 37.5
VMungo1215G1527 Vigna mungo HOM05D004345 ORTHO05D005192 2.7e-43 179.9 287 39.0
Glyma.02G144000 Glycine max HOM05D004345 ORTHO05D005192 6.1e-43 178.7 288 38.5
TWI31G0574 Tripterygium wilfordii HOM05D004345 ORTHO05D005192 7.9e-43 178.3 289 38.8
Phvul.011G090800 Phaseolus vulgaris HOM05D004345 ORTHO05D005192 2.3e-42 176.8 292 38.7
PGR044G2251 Punica granatum HOM05D004345 ORTHO05D005192 4.8e-40 169.1 298 37.9
DCAR_009432 Daucus carota HOM05D004345 ORTHO05D005192 6.3e-40 168.7 288 34.4
COL.COLO4_14552 Corchorus olitorius HOM05D004345 ORTHO05D005192 1.4e-39 167.5 235 46.4
Thecc.05G018000 Theobroma cacao HOM05D004345 ORTHO05D005192 1.8e-39 167.2 232 40.9
SHI21683 Sapria himalayana HOM05D004345 ORTHO05D005192 4.1e-39 166.0 290 36.9
MSTRG.24391 Avicennia marina HOM05D004345 ORTHO05D005192 1.6e-38 164.1 291 36.8
Cpa.g.sc3060.1 Carica papaya HOM05D004345 ORTHO05D005192 2.0e-38 163.7 248 43.1
Eucgr.C04176 Eucalyptus grandis HOM05D004345 ORTHO05D005192 2.0e-38 163.7 295 38.6
EL10Ac9g22980 Beta vulgaris HOM05D000200 ORTHO05D001546 3.5e-38 162.9 289 38.8
Migut.N02797 Erythranthe guttata HOM05D004345 ORTHO05D005192 5.9e-38 162.2 290 36.6
SalBow3G2318 Salvia bowleyana HOM05D004345 ORTHO05D005192 1.5e-36 157.5 288 36.8
Aqoxy4G03088 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 5.5e-36 155.6 290 35.9
AUR62032951 Chenopodium quinoa HOM05D004345 ORTHO05D005192 1.6e-35 154.1 289 35.6
QL07p001298 Quercus lobata HOM05D004345 ORTHO05D005192 4.0e-34 149.4 249 40.6
HanXRQChr07g0196981 Helianthus annuus HOM05D004345 ORTHO05D005192 1.2e-33 147.9 280 32.9
Lsat_1_v5_gn_8_70480 Lactuca sativa HOM05D004345 ORTHO05D005192 1.5e-33 147.5 286 33.2
Hund17623 Selenicereus undatus HOM05D004345 ORTHO05D005192 4.4e-33 146.0 289 35.3
MBI07_g11743_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 1.7e-32 144.1 304 34.5
Aqoxy4G01527 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 2.2e-32 143.7 289 35.3
ECA234G4090 Erigeron canadensis HOM05D004345 ORTHO05D005192 2.2e-32 143.7 283 33.9
CDE12G0342 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 1.6e-30 137.5 286 36.0
Nitab4.5_0001423g0010 Nicotiana tabacum HOM05D004345 ORTHO05D005192 2.7e-30 136.7 285 33.0
Hund25524 Selenicereus undatus HOM05D004345 ORTHO05D005192 2.7e-30 136.7 295 31.9
Nitab4.5_0008354g0010 Nicotiana tabacum HOM05D004345 ORTHO05D005192 1.3e-29 134.4 285 33.0
Sopen01g042020 Solanum pennellii HOM05D004345 ORTHO05D005192 1.1e-28 131.3 280 33.2
Eucgr.K02289 Eucalyptus grandis HOM05D004345 ORTHO05D005192 1.9e-28 130.6 202 44.1
A05p31320 Brassica napus HOM05D004345 ORTHO05D005192 5.5e-28 129.0 66 86.4
BraA05t21970Z Brassica rapa HOM05D004345 ORTHO05D005192 5.5e-28 129.0 66 86.4
ECA238G4368 Erigeron canadensis HOM05D004345 ORTHO05D005192 5.5e-28 129.0 285 31.6
Solyc01g098450.4 Solanum lycopersicum HOM05D004345 ORTHO05D005192 5.5e-28 129.0 280 32.9
Ah.01g012750 Amaranthus hybridus HOM05D004345 ORTHO05D005192 7.2e-28 128.6 303 31.7
Peaxi162Scf00434g00066 Petunia axillaris HOM05D004345 ORTHO05D005192 1.0e-26 124.8 285 30.5
unitig_744.g24116 Utricularia gibba HOM05D004345 ORTHO05D005192 5.2e-26 122.5 286 31.8
PSO210G0907 Papaver somniferum HOM05D004345 ORTHO05D005192 1.5e-25 120.9 293 31.1
THA.LOC104807021 Tarenaya hassleriana HOM05D004345 ORTHO05D005192 7.5e-25 118.6 104 57.7
MBI07_g44810_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 2.8e-24 116.7 264 33.0
Ah.03g148550 Amaranthus hybridus HOM05D004345 ORTHO05D005192 8.3e-24 115.2 290 30.3
Cc07_g15690 Coffea canephora HOM05D004345 ORTHO05D005192 1.8e-23 114.0 253 31.2
PSO210G0382 Papaver somniferum HOM05D004345 ORTHO05D005192 7.0e-23 112.1 292 31.2
CDE09G0455 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 3.5e-22 109.8 252 33.3
Nitab4.5_0001903g0100 Nicotiana tabacum HOM05D004345 ORTHO05D005192 2.2e-21 107.1 284 31.3
Dinv39346 Davidia involucrata HOM05D004345 ORTHO05D005192 1.5e-20 104.4 167 41.3
Zm00001eb399070 Zea mays HOM05D004345 ORTHO05D005192 2.1e-19 100.5 292 30.5
HPP92_000827 Vanilla planifolia HOM05D004345 ORTHO05D005192 4.7e-19 99.4 287 32.1
BcaB06g25876 Brassica carinata HOM05D004345 ORTHO05D005192 4.4e-17 92.8 50 84.0
Cpa.g.sc4881.1 Carica papaya HOM05D004345 ORTHO05D005192 4.4e-17 92.8 182 36.3
Os03g0240400 Oryza sativa ssp. japonica HOM05D004345 ORTHO05D005192 7.5e-17 92.0 289 30.4
PSO384G0273 Papaver somniferum HOM05D004345 ORTHO05D005192 2.9e-13 80.1 256 27.7
Os09g0104700 Oryza sativa ssp. japonica HOM05D004345 ORTHO05D005192 6.6e-13 79.0 294 28.9
PSO407G0063 Papaver somniferum HOM05D004345 ORTHO05D005192 1.5e-12 77.8 142 35.2
MBI07_g37626_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 2.8e-11 73.6 216 28.2


User provided reference genes

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