Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g28614 Brassica carinata HOM05D004837 ORTHO05D005741 0.0e+00 1231.1 691 100.0
C05p47190 Brassica napus HOM05D004837 ORTHO05D005741 0.0e+00 1229.5 691 99.9
BolC5t33444H Brassica oleracea HOM05D004837 ORTHO05D005741 0.0e+00 1226.5 691 98.1
Thhalv10020192m.g Eutrema salsugineum HOM05D004837 ORTHO05D005741 0.0e+00 1161.4 692 92.6
AL3G31770 Arabidopsis lyrata HOM05D004837 ORTHO05D005741 0.0e+00 1156.4 691 91.8
AT3G18480 Arabidopsis thaliana HOM05D004837 ORTHO05D005741 0.0e+00 1151.7 691 91.0
Sp3g16570 Schrenkiella parvula HOM05D004837 ORTHO05D005741 0.0e+00 1147.1 691 93.6
A05p31170 Brassica napus HOM05D004837 ORTHO05D005741 0.0e+00 1146.3 691 94.4
BraA05t21958Z Brassica rapa HOM05D004837 ORTHO05D005741 0.0e+00 1146.3 691 94.4
BolC1t04537H Brassica oleracea HOM05D004837 ORTHO05D005741 0.0e+00 1141.3 693 91.6
BcaB06g25891 Brassica carinata HOM05D004837 ORTHO05D005741 0.0e+00 1135.9 691 91.8
Aa31LG8G5290 Aethionema arabicum HOM05D004837 ORTHO05D005741 0.0e+00 1127.9 693 89.8
BcaC09g48805 Brassica carinata HOM05D004837 ORTHO05D005741 0.0e+00 1123.6 693 91.1
BcaB04g20769 Brassica carinata HOM05D004837 ORTHO05D005741 0.0e+00 1122.8 691 91.2
C01p45740 Brassica napus HOM05D004837 ORTHO05D005741 0.0e+00 1122.1 693 90.9
Carub.0003s1824 Capsella rubella HOM05D004837 ORTHO05D005741 0.0e+00 1116.7 692 89.9
A01p35930 Brassica napus HOM05D004837 ORTHO05D005741 0.0e+00 1110.1 692 90.2
CARHR093830 Cardamine hirsuta HOM05D004837 ORTHO05D005741 0.0e+00 1106.3 694 88.9
BraA01t03672Z Brassica rapa HOM05D004837 ORTHO05D005741 0.0e+00 1094.0 723 86.3
THA.LOC104821845 Tarenaya hassleriana HOM05D004837 ORTHO05D005741 0.0e+00 1080.5 692 86.4
COL.COLO4_16258 Corchorus olitorius HOM05D004837 ORTHO05D005741 5.7e-292 1007.3 691 80.6
Gorai.006G062600 Gossypium raimondii HOM05D004837 ORTHO05D005741 3.7e-291 1004.6 691 80.2
Gohir.A09G047000 Gossypium hirsutum HOM05D004837 ORTHO05D005741 5.4e-290 1000.7 691 79.9
Gohir.D09G047500 Gossypium hirsutum HOM05D004837 ORTHO05D005741 2.0e-289 998.8 691 79.9
CSS0007108 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 4.5e-289 997.7 691 78.4
CSS0011479 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 4.5e-289 997.7 691 78.3
Atru.chr9.792 Acer truncatum HOM05D004837 ORTHO05D005741 3.8e-288 994.6 691 79.5
TWI81G0923 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 3.6e-286 988.0 688 79.8
Prupe.8G104400 Prunus persica HOM05D004837 ORTHO05D005741 3.0e-285 984.9 691 79.7
Cfa019797 Carpinus fangiana HOM05D004837 ORTHO05D005741 4.0e-285 984.6 691 78.4
Glyma.07G089600 Glycine max HOM05D004837 ORTHO05D005741 8.9e-285 983.4 695 78.8
Potri.012G061000 Populus trichocarpa HOM05D004837 ORTHO05D005741 2.0e-284 982.2 673 79.0
Actinidia35081 Actinidia chinensis HOM05D004837 ORTHO05D005741 4.4e-284 981.1 691 76.8
Ciclev10019149m.g Citrus clementina HOM05D004837 ORTHO05D005741 7.5e-284 980.3 691 78.4
Medtr8g103950 Medicago truncatula HOM05D004837 ORTHO05D005741 1.1e-282 976.5 694 77.2
Thecc.03G030500 Theobroma cacao HOM05D004837 ORTHO05D005741 5.4e-282 974.2 691 77.3
CiPaw.15G128500 Carya illinoinensis HOM05D004837 ORTHO05D005741 9.2e-282 973.4 688 77.5
TAR629G1790 Trochodendron aralioides HOM05D004837 ORTHO05D005741 9.2e-282 973.4 689 78.5
arahy.Tifrunner.gnm1.ann1.SIGA6A Arachis hypogaea HOM05D004837 ORTHO05D005741 1.2e-281 973.0 690 79.3
Glyma.09G187100 Glycine max HOM05D004837 ORTHO05D005741 1.2e-281 973.0 685 78.5
Lalb_Chr22g0352981 Lupinus albus HOM05D004837 ORTHO05D005741 2.0e-281 972.2 688 79.7
RcHm_v2.0_Chr7g0184861 Rosa chinensis HOM05D004837 ORTHO05D005741 4.6e-281 971.1 688 78.6
Solyc06g069210.3 Solanum lycopersicum HOM05D004837 ORTHO05D005741 1.7e-280 969.1 691 76.7
Manes.01G012900 Manihot esculenta HOM05D004837 ORTHO05D005741 3.9e-280 968.0 691 78.6
CsaV3_1G043510 Cucumis sativus L. HOM05D004837 ORTHO05D005741 8.6e-280 966.8 691 78.3
Lj4g0025474 Lotus japonicus HOM05D004837 ORTHO05D005741 8.6e-280 966.8 691 78.6
TWI15G0076 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 2.5e-279 965.3 691 76.4
CANSAT80G2884 Cannabis sativa HOM05D004837 ORTHO05D005741 3.3e-279 964.9 691 76.0
GSVIVG01008258001 Vitis vinifera HOM05D004837 ORTHO05D005741 3.3e-279 964.9 666 79.9
Lj2g0006103 Lotus japonicus HOM05D004837 ORTHO05D005741 3.6e-278 961.4 695 77.0
CSS0025722 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 1.8e-277 959.1 691 76.3
Lj5C146T15 Lonicera japonica HOM05D004837 ORTHO05D005741 2.3e-277 958.7 656 78.5
HanXRQChr17g0558331 Helianthus annuus HOM05D004837 ORTHO05D005741 3.1e-277 958.4 692 75.1
ClCG03G012520 Citrullus lanatus HOM05D004837 ORTHO05D005741 4.0e-277 958.0 691 76.4
MD10G1081900 Malus domestica HOM05D004837 ORTHO05D005741 1.5e-276 956.1 687 76.6
Duzib084G1378 Durio zibethinus HOM05D004837 ORTHO05D005741 4.4e-276 954.5 691 78.0
Sed0018155 Sechium edule HOM05D004837 ORTHO05D005741 5.8e-276 954.1 691 77.3
vmacro23526 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 9.8e-276 953.4 750 70.7
vmacro16451 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 1.3e-275 953.0 750 70.7
Sopen06g026470 Solanum pennellii HOM05D004837 ORTHO05D005741 2.2e-275 952.2 691 76.1
TPR.G21711 Trifolium pratense HOM05D004837 ORTHO05D005741 2.2e-275 952.2 660 80.0
Lsat_1_v5_gn_8_147101 Lactuca sativa HOM05D004837 ORTHO05D005741 8.3e-275 950.3 691 73.5
ECA233G3214 Erigeron canadensis HOM05D004837 ORTHO05D005741 1.4e-274 949.5 669 75.9
FvH4_5g12492 Fragaria vesca HOM05D004837 ORTHO05D005741 4.1e-274 948.0 688 75.4
Rhsim12G0143900 Rhododendron simsii HOM05D004837 ORTHO05D005741 1.6e-273 946.0 652 78.2
Manes.05G138800 Manihot esculenta HOM05D004837 ORTHO05D005741 2.0e-273 945.7 691 76.1
FAN08G2631 Fragaria x ananassa HOM05D004837 ORTHO05D005741 3.5e-273 944.9 688 75.6
FAN18G2885 Fragaria x ananassa HOM05D004837 ORTHO05D005741 7.8e-273 943.7 688 75.1
PSO063G6385 Papaver somniferum HOM05D004837 ORTHO05D005741 1.0e-272 943.3 676 75.4
Ca_25454_v3 Cicer arietinum L. HOM05D004837 ORTHO05D005741 1.7e-272 942.6 694 74.5
Nn4g23774 Nelumbo nucifera HOM05D004837 ORTHO05D005741 8.6e-272 940.3 693 75.5
PSO782G0716 Papaver somniferum HOM05D004837 ORTHO05D005741 1.5e-271 939.5 676 75.4
Lalb_Chr24g0397611 Lupinus albus HOM05D004837 ORTHO05D005741 1.9e-271 939.1 684 77.2
Eucgr.B00707 Eucalyptus grandis HOM05D004837 ORTHO05D005741 7.3e-271 937.2 672 77.7
Phvul.004G160100 Phaseolus vulgaris HOM05D004837 ORTHO05D005741 9.5e-271 936.8 687 76.7
arahy.Tifrunner.gnm1.ann1.7R0LHH Arachis hypogaea HOM05D004837 ORTHO05D005741 2.1e-270 935.6 735 72.0
FAN04G0597 Fragaria x ananassa HOM05D004837 ORTHO05D005741 2.8e-270 935.3 688 76.0
arahy.Tifrunner.gnm1.ann1.71FAZ0 Arachis hypogaea HOM05D004837 ORTHO05D005741 6.8e-269 930.6 735 71.6
QL10p023827 Quercus lobata HOM05D004837 ORTHO05D005741 8.9e-269 930.2 687 76.1
Cpa.g.sc13.20 Carica papaya HOM05D004837 ORTHO05D005741 4.9e-267 924.5 687 76.4
Aqoxy3G03933 Aquilegia oxysepala HOM05D004837 ORTHO05D005741 1.4e-266 922.9 671 75.1
DCAR_004539 Daucus carota HOM05D004837 ORTHO05D005741 9.2e-266 920.2 685 74.7
FAN18G2415 Fragaria x ananassa HOM05D004837 ORTHO05D005741 1.0e-264 916.8 737 70.4
PGR083G0937 Punica granatum HOM05D004837 ORTHO05D005741 1.7e-264 916.0 691 76.3
SGA_v2.0_scaffold10G05151 Striga asiatica HOM05D004837 ORTHO05D005741 1.3e-259 899.8 689 72.1
Cc04_g07300 Coffea canephora HOM05D004837 ORTHO05D005741 1.2e-257 893.3 691 72.6
EL10Ac5g11426 Beta vulgaris HOM05D004837 ORTHO05D005741 1.6e-257 892.9 676 74.4
Peaxi162Scf00013g00943 Petunia axillaris HOM05D004837 ORTHO05D005741 3.5e-257 891.7 656 74.5
MSTRG.14939 Avicennia marina HOM05D004837 ORTHO05D005741 1.3e-256 889.8 687 71.5
Migut.M00003 Erythranthe guttata HOM05D004837 ORTHO05D005741 3.0e-256 888.6 687 72.8
Sc10g0009510 Simmondsia chinensis HOM05D004837 ORTHO05D005741 8.6e-256 887.1 643 77.4
Ah.02g115350 Amaranthus hybridus HOM05D004837 ORTHO05D005741 3.3e-255 885.2 675 73.5
unitig_37.g12022 Utricularia gibba HOM05D004837 ORTHO05D005741 9.6e-255 883.6 682 70.1
AUR62029852 Chenopodium quinoa HOM05D004837 ORTHO05D005741 2.8e-254 882.1 677 73.7
AUR62025880 Chenopodium quinoa HOM05D004837 ORTHO05D005741 1.2e-252 876.7 677 73.4
VMungo0464G1696 Vigna mungo HOM05D004837 ORTHO05D005741 4.4e-252 874.8 687 74.2
Sabra12G0044300 Salix brachista HOM05D004837 ORTHO05D005741 5.8e-252 874.4 682 71.6
Nitab4.5_0010565g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 6.0e-249 864.4 738 66.8
arahy.Tifrunner.gnm1.ann1.9R3N8Z Arachis hypogaea HOM05D004837 ORTHO05D005741 1.1e-245 853.6 615 78.9
MBI13_g10043_MAGBIO Magnolia biondii HOM05D004837 ORTHO05D005741 4.9e-243 844.7 677 70.0
Hund02403 Selenicereus undatus HOM05D004837 ORTHO05D005741 1.4e-242 843.2 622 75.9
Haze_18623 Corylus avellana HOM05D004837 ORTHO05D005741 3.2e-242 842.0 1041 51.5
Os03g0710900 Oryza sativa ssp. japonica HOM05D004837 ORTHO05D005741 4.6e-241 838.2 649 71.5
HPP92_013262 Vanilla planifolia HOM05D004837 ORTHO05D005741 8.7e-240 833.9 671 69.0
Nitab4.5_0001432g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 5.6e-239 831.2 724 65.6
Dinv40420 Davidia involucrata HOM05D004837 ORTHO05D005741 1.1e-237 827.0 580 77.9
Nitab4.5_0001599g0070 Nicotiana tabacum HOM05D004837 ORTHO05D005741 5.3e-237 824.7 719 65.4
Zm00001eb216420 Zea mays HOM05D004837 ORTHO05D005741 1.4e-234 816.6 655 69.5
CDE11G0344 Ceratophyllum demersum HOM05D004837 ORTHO05D005741 3.3e-231 805.4 655 68.9
Nitab4.5_0008699g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 2.8e-230 802.4 694 65.9
ATR0021G039 Amborella trichopoda HOM05D004837 ORTHO05D005741 8.2e-230 800.8 691 66.3
SEGI_01686 Sequoiadendron giganteum HOM05D004837 ORTHO05D005741 1.8e-229 799.7 662 68.7
Mapoly0091s0053 Marchantia polymorpha HOM05D004837 ORTHO05D005741 8.2e-214 747.7 667 63.6
SMO147G0276 Selaginella moellendorffii HOM05D004837 ORTHO05D005741 1.5e-207 726.9 658 61.2
Psat7g012560 Pisum sativum HOM05D004837 ORTHO05D005741 5.7e-207 724.9 557 74.7
Oeu016160.3 Olea europaea HOM05D004837 ORTHO05D005741 1.1e-205 720.7 704 61.1
Pp3c25_10040 Physcomitrium patens HOM05D004837 ORTHO05D005741 5.0e-203 711.8 669 61.9
Pp3c3_5600 Physcomitrium patens HOM05D004837 ORTHO05D005741 1.4e-202 710.3 671 59.3
CBR_g38539 Chara braunii HOM05D004837 ORTHO05D005741 1.2e-164 584.3 687 52.5
MELO3C015107.2 Cucumis melo HOM05D004837 ORTHO05D005741 7.0e-157 558.5 404 78.7
PGSC0003DMG400004053 Solanum tuberosum HOM05D004837 ORTHO05D005741 1.6e-156 557.4 428 73.6
Actinidia31023 Actinidia chinensis HOM05D004837 ORTHO05D005741 8.4e-142 508.4 364 74.5
HPP92_013216 Vanilla planifolia HOM05D004837 ORTHO05D005741 7.1e-133 478.8 343 71.4
AagrBONN_evm.TU.Sc2ySwM_228.1000 Anthoceros agrestis HOM05D004837 ORTHO05D005741 6.2e-129 465.7 579 51.5
CAN.G423.1 Capsicum annuum HOM05D004837 ORTHO05D005741 6.3e-105 386.0 368 62.0
Atru.chr9.1054 Acer truncatum HOM05D004837 ORTHO05D005741 1.0e-91 342.0 510 46.9
Atru.chr9.1055 Acer truncatum HOM05D004837 ORTHO05D005741 3.7e-89 333.6 519 46.4
Cre08.g382650 Chlamydomonas reinhardtii HOM05D004837 ORTHO05D005741 9.1e-80 302.4 717 33.5
HPP92_013215 Vanilla planifolia HOM05D004837 ORTHO05D005741 1.4e-75 288.5 279 60.9
Prupe.8G103800 Prunus persica HOM05D004837 ORTHO05D005741 1.0e-46 192.6 781 29.7
MELO3C029547.2 Cucumis melo HOM05D004837 ORTHO05D005741 1.3e-46 192.2 185 61.1
CAN.G587.83 Capsicum annuum HOM05D004837 ORTHO05D005741 3.0e-46 191.0 131 75.6
Gorai.008G286000 Gossypium raimondii HOM05D004837 ORTHO05D005741 3.0e-46 191.0 567 32.3
Gohir.D12G266250 Gossypium hirsutum HOM05D004837 ORTHO05D005741 6.2e-44 183.3 157 66.9
SHI30382 Sapria himalayana HOM05D004837 ORTHO05D005741 1.1e-43 182.6 131 74.0
Nitab4.5_0010701g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 1.1e-37 162.5 94 85.1
PRCOL_00005675 Prasinoderma coloniale HOM05D004837 ORTHO05D005741 5.8e-34 150.2 622 26.5
Ah.11g042150 Amaranthus hybridus HOM05D004837 ORTHO05D005741 4.7e-28 130.6 91 76.9
Cfa021462 Carpinus fangiana HOM05D004837 ORTHO05D005741 1.6e-23 115.5 671 22.1
Solyc03g119670.3 Solanum lycopersicum HOM05D004837 ORTHO05D005741 3.1e-19 101.3 71 76.1
BcaC07g39700 Brassica carinata HOM05D004837 ORTHO05D026816 2.7e-15 88.2 105 61.9
MCO10G228 Micromonas commoda HOM05D004837 ORTHO05D005741 2.7e-15 88.2 690 22.5
Cre04.g223900 Chlamydomonas reinhardtii HOM05D004837 ORTHO05D005741 1.3e-12 79.3 779 19.3
Psat7g009760 Pisum sativum HOM05D004837 ORTHO05D005741 1.2e-10 72.8 76 52.6
Actinidia31022 Actinidia chinensis HOM05D004837 ORTHO05D005741 9.9e-10 69.7 71 54.9
BolC8t50465H Brassica oleracea HOM05D004837 ORTHO05D005741 2.9e-09 68.2 78 57.7
DCAR_013034 Daucus carota HOM05D004837 ORTHO05D005741 4.2e-08 64.3 59 59.3
C08p28590 Brassica napus HOM05D004837 ORTHO05D005741 1.6e-07 62.4 78 56.4


User provided reference genes

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