Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g28610 Brassica carinata HOM05D007790 ORTHO05D009880 4.2e-30 134.0 68 100.0
C05p47140 Brassica napus HOM05D007790 ORTHO05D009880 4.2e-30 134.0 68 100.0
BolC5t33440H Brassica oleracea HOM05D007790 ORTHO05D009880 4.2e-30 134.0 68 100.0
A05p31120 Brassica napus HOM05D007790 ORTHO05D009880 6.7e-28 126.7 68 95.6
BraA05t21954Z Brassica rapa HOM05D007790 ORTHO05D009880 3.3e-27 124.4 68 94.1
Thhalv10021890m.g Eutrema salsugineum HOM05D007790 ORTHO05D009880 2.2e-26 121.7 68 89.7
BcaB06g25895 Brassica carinata HOM05D007790 ORTHO05D009880 4.8e-26 120.6 68 91.2
Sp3g16600 Schrenkiella parvula HOM05D007790 ORTHO05D009880 2.0e-24 115.2 68 86.8
BcaB04g20771 Brassica carinata HOM05D007790 ORTHO05D009880 3.5e-24 114.4 68 83.8
AT3G18510 Arabidopsis thaliana HOM05D007790 ORTHO05D009880 1.3e-23 112.5 68 83.8
BcaC09g48808 Brassica carinata HOM05D007790 ORTHO05D009880 3.8e-23 110.9 69 82.6
C01p45710 Brassica napus HOM05D007790 ORTHO05D009880 3.8e-23 110.9 69 82.6
AL3G31810 Arabidopsis lyrata HOM05D007790 ORTHO05D009880 1.5e-22 109.0 72 80.6
BolC1t04534H Brassica oleracea HOM05D007790 ORTHO05D009880 2.5e-22 108.2 69 79.7
Aa31LG8G5350 Aethionema arabicum HOM05D007790 ORTHO05D009880 3.2e-22 107.8 65 84.6
Carub.0003s1829 Capsella rubella HOM05D007790 ORTHO05D009880 3.2e-22 107.8 66 80.3
CARHR093880 Cardamine hirsuta HOM05D007790 ORTHO05D009880 3.2e-22 107.8 68 82.4
Potri.011G140300 Populus trichocarpa HOM05D007790 ORTHO05D009880 4.5e-16 87.4 59 71.2
Thecc.03G029600 Theobroma cacao HOM05D007790 ORTHO05D009880 5.0e-15 84.0 59 67.8
THA.LOC109116948 Tarenaya hassleriana HOM05D007790 ORTHO05D009880 1.9e-14 82.0 52 75.0
Duzib068G0515 Durio zibethinus HOM05D007790 ORTHO05D009880 4.2e-14 80.9 59 64.4
Eucgr.K02661 Eucalyptus grandis HOM05D007790 ORTHO05D009880 5.5e-14 80.5 58 62.1
Manes.01G020200 Manihot esculenta HOM05D007790 ORTHO05D009880 9.4e-14 79.7 59 64.4
PGR044G0624 Punica granatum HOM05D007790 ORTHO05D009880 6.1e-13 77.0 52 67.3
Gohir.D12G266000 Gossypium hirsutum HOM05D007790 ORTHO05D009880 8.0e-13 76.6 57 61.4
Gorai.008G285700 Gossypium raimondii HOM05D007790 ORTHO05D009880 8.0e-13 76.6 57 61.4
Cpa.g.sc13.39 Carica papaya HOM05D007790 ORTHO05D009880 1.4e-12 75.9 55 63.6
CiPaw.16G084400 Carya illinoinensis HOM05D007790 ORTHO05D009880 1.4e-12 75.9 59 62.7
Gohir.A12G265800 Gossypium hirsutum HOM05D007790 ORTHO05D009880 1.8e-12 75.5 57 59.6
Hund18110 Selenicereus undatus HOM05D007790 ORTHO05D009880 1.8e-12 75.5 56 62.5
DCAR_011206 Daucus carota HOM05D007790 ORTHO05D009880 3.0e-12 74.7 64 53.1
Psat3g006760 Pisum sativum HOM05D007790 ORTHO05D009880 4.0e-12 74.3 53 64.2
Ciclev10023249m.g Citrus clementina HOM05D007790 ORTHO05D009880 5.2e-12 73.9 56 64.3
Hma1.2p1_0151F.1_g067280 Hydrangea macrophylla HOM05D007790 ORTHO05D009880 5.2e-12 73.9 57 57.9
Sed0012152 Sechium edule HOM05D007790 ORTHO05D009880 8.8e-12 73.2 56 60.7
Cfa019804 Carpinus fangiana HOM05D007790 ORTHO05D009880 1.2e-11 72.8 55 61.8
RcHm_v2.0_Chr7g0184711 Rosa chinensis HOM05D007790 ORTHO05D009880 1.2e-11 72.8 54 64.8
vmacro22488 Vaccinium macrocarpon HOM05D007790 ORTHO05D009880 1.2e-11 72.8 56 58.9
Haze_18633 Corylus avellana HOM05D007790 ORTHO05D009880 1.5e-11 72.4 55 61.8
MELO3C017293.2 Cucumis melo HOM05D007790 ORTHO05D009880 1.5e-11 72.4 52 65.4
Sc10g0009520 Simmondsia chinensis HOM05D007790 ORTHO05D009880 1.5e-11 72.4 53 62.3
ClCG06G014960 Citrullus lanatus HOM05D007790 ORTHO05D009880 2.0e-11 72.0 55 60.0
CANSAT64G1586 Cannabis sativa HOM05D007790 ORTHO05D009880 3.4e-11 71.2 61 59.0
Ca_09459_v3 Cicer arietinum L. HOM05D007790 ORTHO05D009880 4.4e-11 70.9 57 57.9
FAN04G3172 Fragaria x ananassa HOM05D007790 ORTHO05D009880 4.4e-11 70.9 54 63.0
FAN13G0824 Fragaria x ananassa HOM05D007790 ORTHO05D009880 4.4e-11 70.9 54 63.0
Medtr7g115600 Medicago truncatula HOM05D007790 ORTHO05D009880 4.4e-11 70.9 57 56.1
Atru.chr9.781 Acer truncatum HOM05D007790 ORTHO05D009880 7.5e-11 70.1 58 56.9
CsaV3_1G003680 Cucumis sativus L. HOM05D007790 ORTHO05D009880 7.5e-11 70.1 52 63.5
Glyma.02G139000 Glycine max HOM05D007790 ORTHO05D009880 7.5e-11 70.1 56 57.1
Glyma.07G088700 Glycine max HOM05D007790 ORTHO05D009880 7.5e-11 70.1 56 57.1
FvH4_5g12630 Fragaria vesca HOM05D007790 ORTHO05D009880 9.8e-11 69.7 54 61.1
FAN18G4544 Fragaria x ananassa HOM05D007790 ORTHO05D009880 9.8e-11 69.7 54 61.1
Lsat_1_v5_gn_5_25161 Lactuca sativa HOM05D007790 ORTHO05D009880 1.7e-10 68.9 53 56.6
Lj2g0008445 Lotus japonicus HOM05D007790 ORTHO05D009880 1.7e-10 68.9 55 63.6
Actinidia35077 Actinidia chinensis HOM05D007790 ORTHO05D009880 2.2e-10 68.6 52 59.6
arahy.Tifrunner.gnm1.ann1.ZI6FWF Arachis hypogaea HOM05D007790 ORTHO05D009880 2.2e-10 68.6 55 56.4
FAN18G2988 Fragaria x ananassa HOM05D007790 ORTHO05D009880 2.2e-10 68.6 54 59.3
PSO782G1288 Papaver somniferum HOM05D007790 ORTHO05D009880 2.2e-10 68.6 49 65.3
Actinidia18942 Actinidia chinensis HOM05D007790 ORTHO05D009880 2.8e-10 68.2 52 59.6
arahy.Tifrunner.gnm1.ann1.11NJV3 Arachis hypogaea HOM05D007790 ORTHO05D009880 2.8e-10 68.2 55 56.4
MD14G1222600 Malus domestica HOM05D007790 ORTHO05D009880 4.8e-10 67.4 49 65.3
SGA_v2.0_scaffold569G52962 Striga asiatica HOM05D007790 ORTHO05D009880 4.8e-10 67.4 67 50.7
Phvul.003G060000 Phaseolus vulgaris HOM05D007790 ORTHO05D009880 6.3e-10 67.0 52 55.8
MD06G1212000 Malus domestica HOM05D007790 ORTHO05D009880 8.3e-10 66.6 49 65.3
Lalb_Chr09g0331121 Lupinus albus HOM05D007790 ORTHO05D009880 2.4e-09 65.1 53 56.6
Nitab4.5_0000410g0040 Nicotiana tabacum HOM05D007790 ORTHO05D009880 3.1e-09 64.7 65 49.2
CSS0043662 Camellia sinensis var. sinensis HOM05D007790 ORTHO05D009880 4.1e-09 64.3 46 63.0
SalBow2G0723 Salvia bowleyana HOM05D007790 ORTHO05D009880 4.1e-09 64.3 55 54.5
TWI81G0366 Tripterygium wilfordii HOM05D007790 ORTHO05D009880 4.1e-09 64.3 48 60.4
Nitab4.5_0001599g0140 Nicotiana tabacum HOM05D007790 ORTHO05D009880 1.2e-08 62.8 53 54.7
Migut.I00921 Erythranthe guttata HOM05D007790 ORTHO05D009880 1.6e-08 62.4 57 52.6
Peaxi162Scf00015g00827 Petunia axillaris HOM05D007790 ORTHO05D009880 1.6e-08 62.4 58 48.3
Solyc03g119723.1 Solanum lycopersicum HOM05D007790 ORTHO05D009880 2.7e-08 61.6 65 46.2
Sopen03g038570 Solanum pennellii HOM05D007790 ORTHO05D009880 2.7e-08 61.6 65 46.2
ATR0681G001 Amborella trichopoda HOM05D007790 ORTHO05D009880 3.5e-08 61.2 61 45.9
Os06g0618300 Oryza sativa ssp. japonica HOM05D007790 ORTHO05D009880 4.5e-08 60.8 46 60.9
EL10Ac1g02162 Beta vulgaris HOM05D007790 ORTHO05D009880 5.9e-08 60.5 68 48.5
Cc04_g07440 Coffea canephora HOM05D007790 ORTHO05D009880 1.1e-06 56.2 55 45.5
HanXRQChr05g0152891 Helianthus annuus HOM05D007790 ORTHO05D009880 1.1e-06 56.2 54 50.0
SGA_v2.0_scaffold69G23333 Striga asiatica HOM05D027511 ORTHO05D009880 1.5e-06 55.8 46 56.5
Glyma.07G167700 Glycine max HOM05D007790 ORTHO05D009880 4.2e-06 54.3 56 50.0
Oeu055894.1 Olea europaea HOM05D007790 ORTHO05D009880 4.2e-06 54.3 76 36.8
Zm00001eb388110 Zea mays HOM05D007790 ORTHO05D009880 4.2e-06 54.3 34 67.6


User provided reference genes

Program Settings