Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g28580 Brassica carinata HOM05D004540 ORTHO05D004852 6.6e-50 200.3 94 100.0
C05p46830 Brassica napus HOM05D004540 ORTHO05D004852 6.6e-50 200.3 94 100.0
BolC5t33413H Brassica oleracea HOM05D004540 ORTHO05D004852 6.6e-50 200.3 94 100.0
A05p30900 Brassica napus HOM05D004540 ORTHO05D004852 6.9e-47 190.3 94 95.7
BraA05t21932Z Brassica rapa HOM05D004540 ORTHO05D004852 6.9e-47 190.3 94 95.7
BcaB04g19000 Brassica carinata HOM05D004540 ORTHO05D004852 2.4e-36 155.2 95 80.0
BcaB04g20754 Brassica carinata HOM05D004540 ORTHO05D004852 4.2e-36 154.5 94 77.7
C03p49670 Brassica napus HOM05D004540 ORTHO05D004852 5.4e-36 154.1 95 78.9
BolC3t17265H Brassica oleracea HOM05D004540 ORTHO05D004852 5.4e-36 154.1 95 78.9
Thhalv10022275m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 9.3e-36 153.3 94 76.6
BcaB06g25922 Brassica carinata HOM05D004540 ORTHO05D004852 1.2e-35 152.9 94 78.7
BcaNung06138 Brassica carinata HOM05D004540 ORTHO05D004852 1.2e-35 152.9 94 78.7
A03p40790 Brassica napus HOM05D004540 ORTHO05D004852 1.6e-35 152.5 95 77.9
BraA03t13237Z Brassica rapa HOM05D004540 ORTHO05D004852 1.6e-35 152.5 95 77.9
A01p35740 Brassica napus HOM05D004540 ORTHO05D004852 1.1e-33 146.4 96 72.9
BraA01t03656Z Brassica rapa HOM05D004540 ORTHO05D004852 1.1e-33 146.4 96 72.9
BcaC09g48828 Brassica carinata HOM05D004540 ORTHO05D004852 2.8e-32 141.7 94 70.2
C01p45480 Brassica napus HOM05D004540 ORTHO05D004852 2.8e-32 141.7 94 70.2
BolC1t04514H Brassica oleracea HOM05D004540 ORTHO05D004852 2.8e-32 141.7 94 70.2
AT3G18715 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 6.4e-29 130.6 95 70.5
CARHR094090 Cardamine hirsuta HOM05D004540 ORTHO05D004852 3.2e-28 128.3 96 67.7
Ciclev10026873m.g Citrus clementina HOM05D004540 ORTHO05D004852 5.5e-12 74.3 80 51.2
Medtr3g095690 Medicago truncatula HOM05D004540 ORTHO05D004852 1.2e-11 73.2 75 54.7
Manes.13G071600 Manihot esculenta HOM05D004540 ORTHO05D004852 6.1e-11 70.9 76 53.9
Cpa.g.sc42.109 Carica papaya HOM05D004540 ORTHO05D004852 1.5e-09 66.2 79 46.8
Cfa002837 Carpinus fangiana HOM05D004540 ORTHO05D004852 1.5e-09 66.2 76 52.6
Thecc.01G124700 Theobroma cacao HOM05D004540 ORTHO05D004852 3.3e-09 65.1 88 43.2
Haze_25134 Corylus avellana HOM05D004540 ORTHO05D004852 5.7e-09 64.3 76 52.6
Gohir.A05G386200 Gossypium hirsutum HOM05D004540 ORTHO05D004852 1.3e-08 63.2 74 44.6
Manes.12G152100 Manihot esculenta HOM05D004540 ORTHO05D004852 1.3e-08 63.2 75 46.7
Carub.0003s1849 Capsella rubella HOM05D004540 ORTHO05D004852 1.7e-08 62.8 35 80.0
Lalb_Chr08g0238521 Lupinus albus HOM05D004540 ORTHO05D004852 2.2e-08 62.4 77 45.5
Gohir.D04G023300 Gossypium hirsutum HOM05D004540 ORTHO05D004852 2.8e-08 62.0 74 44.6
Gorai.012G033600 Gossypium raimondii HOM05D004540 ORTHO05D004852 2.8e-08 62.0 74 44.6
Phvul.002G270200 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 2.8e-08 62.0 79 44.3
Eucgr.I00231 Eucalyptus grandis HOM05D004540 ORTHO05D004852 4.8e-08 61.2 73 49.3
CiPaw.03G127700 Carya illinoinensis HOM05D004540 ORTHO05D004852 6.3e-08 60.8 86 43.0
TPR.G18724 Trifolium pratense HOM05D004540 ORTHO05D004852 6.3e-08 60.8 75 48.0
Gohir.A11G055800 Gossypium hirsutum HOM05D004540 ORTHO05D004852 8.2e-08 60.5 75 46.7
Prupe.8G024400 Prunus persica HOM05D004540 ORTHO05D004852 1.1e-07 60.1 79 46.8
Gohir.D11G059900 Gossypium hirsutum HOM05D004540 ORTHO05D004852 1.4e-07 59.7 75 46.7
Gorai.007G064600 Gossypium raimondii HOM05D004540 ORTHO05D004852 1.4e-07 59.7 75 46.7
MD01G1010200 Malus domestica HOM05D004540 ORTHO05D004852 1.4e-07 59.7 74 48.6
RcHm_v2.0_Chr2g0120121 Rosa chinensis HOM05D004540 ORTHO05D004852 1.4e-07 59.7 82 47.6
Potri.005G057400 Populus trichocarpa HOM05D004540 ORTHO05D004852 2.4e-07 58.9 78 43.6
Prupe.6G159700 Prunus persica HOM05D004540 ORTHO05D004852 2.4e-07 58.9 74 47.3
FvH4_1g23990 Fragaria vesca HOM05D004540 ORTHO05D004852 3.1e-07 58.5 82 47.6
FAN19G2513 Fragaria x ananassa HOM05D004540 ORTHO05D004852 3.1e-07 58.5 82 47.6
FAN23G3045 Fragaria x ananassa HOM05D004540 ORTHO05D004852 3.1e-07 58.5 82 47.6
Phvul.009G148100 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 3.1e-07 58.5 78 46.2
CiPaw.04G085800 Carya illinoinensis HOM05D004540 ORTHO05D004852 4.1e-07 58.2 73 49.3
MELO3C008039.2 Cucumis melo HOM05D004540 ORTHO05D004852 4.1e-07 58.2 41 63.4
CsaV3_6G041820 Cucumis sativus L. HOM05D004540 ORTHO05D004852 4.1e-07 58.2 41 63.4
Lalb_Chr12g0203271 Lupinus albus HOM05D004540 ORTHO05D004852 5.3e-07 57.8 74 41.9
FAN26G2008 Fragaria x ananassa HOM05D004540 ORTHO05D004852 6.9e-07 57.4 82 46.3
Potri.007G110700 Populus trichocarpa HOM05D004540 ORTHO05D004852 6.9e-07 57.4 78 43.6
QL06p029800 Quercus lobata HOM05D004540 ORTHO05D004852 1.5e-06 56.2 75 44.0
Cc07_g17790 Coffea canephora HOM05D004540 ORTHO05D004852 2.6e-06 55.5 78 41.0
Glyma.08G147100 Glycine max HOM05D004540 ORTHO05D004852 2.6e-06 55.5 63 46.0
Glyma.05G189500 Glycine max HOM05D004540 ORTHO05D004852 3.4e-06 55.1 63 46.0
TPR.G37334 Trifolium pratense HOM05D004540 ORTHO05D004852 3.4e-06 55.1 79 41.8
AL8G42080 Arabidopsis lyrata HOM05D004540 ORTHO05D004852 4.5e-06 54.7 56 51.8
CARHR278640 Cardamine hirsuta HOM05D004540 ORTHO05D004852 4.5e-06 54.7 72 43.1
Gohir.A10G083507 Gossypium hirsutum HOM05D004540 ORTHO05D004852 7.7e-06 53.9 76 44.7
Gohir.D10G105766 Gossypium hirsutum HOM05D004540 ORTHO05D004852 7.7e-06 53.9 76 44.7
Gorai.011G115500 Gossypium raimondii HOM05D004540 ORTHO05D004852 7.7e-06 53.9 76 44.7
Phvul.007G078400 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 7.7e-06 53.9 75 40.0


User provided reference genes

Program Settings