Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g28566 Brassica carinata HOM05D000088 ORTHO05D039318 3.5e-32 141.0 69 100.0
C05p46640 Brassica napus HOM05D000088 ORTHO05D039318 4.7e-21 104.0 51 98.0
BcaC09g49191 Brassica carinata HOM05D000088 ORTHO05D000830 3.5e-08 61.2 40 70.0
A01p32480 Brassica napus HOM05D000088 ORTHO05D000830 3.5e-08 61.2 40 70.0
C01p41640 Brassica napus HOM05D000088 ORTHO05D000830 3.5e-08 61.2 40 70.0
BolC1t04117H Brassica oleracea HOM05D000088 ORTHO05D000830 3.5e-08 61.2 40 70.0
BraA01t03379Z Brassica rapa HOM05D000088 ORTHO05D000830 3.5e-08 61.2 40 70.0
Cfa008461 Carpinus fangiana HOM05D001769 ORTHO05D001695 7.9e-08 60.1 47 57.4
Haze_11213 Corylus avellana HOM05D000088 ORTHO05D000830 7.9e-08 60.1 47 57.4
BcaB04g20504 Brassica carinata HOM05D000088 ORTHO05D000830 1.8e-07 58.9 40 67.5
BcaC05g28022 Brassica carinata HOM05D000088 ORTHO05D000830 1.8e-07 58.9 40 67.5
BcaC05g28025 Brassica carinata HOM05D000088 ORTHO05D000830 1.8e-07 58.9 40 67.5
A05p25990 Brassica napus HOM05D000088 ORTHO05D000830 1.8e-07 58.9 40 67.5
BolC5t32779H Brassica oleracea HOM05D000088 ORTHO05D000830 1.8e-07 58.9 40 67.5
BraA05t21484Z Brassica rapa HOM05D000088 ORTHO05D000830 1.8e-07 58.9 40 67.5
Thhalv10020938m.g Eutrema salsugineum HOM05D000088 ORTHO05D000830 2.3e-07 58.5 39 69.2
Potri.010G083500 Populus trichocarpa HOM05D000088 ORTHO05D000830 3.9e-07 57.8 48 54.2
CARHR221330 Cardamine hirsuta HOM05D000088 ORTHO05D000830 5.1e-07 57.4 47 55.3
AL3G37060 Arabidopsis lyrata HOM05D000088 ORTHO05D000830 6.7e-07 57.0 41 61.0
Ciclev10005137m.g Citrus clementina HOM05D000088 ORTHO05D000830 6.7e-07 57.0 48 56.2
AL7G41100 Arabidopsis lyrata HOM05D000088 ORTHO05D000830 8.7e-07 56.6 47 53.2
BcaB06g26383 Brassica carinata HOM05D000088 ORTHO05D000830 8.7e-07 56.6 40 65.0
CARHR098600 Cardamine hirsuta HOM05D000088 ORTHO05D000830 8.7e-07 56.6 40 62.5
Phvul.002G043600 Phaseolus vulgaris HOM05D000088 ORTHO05D000830 8.7e-07 56.6 47 55.3
Sp3g20470 Schrenkiella parvula HOM05D000088 ORTHO05D000830 8.7e-07 56.6 38 68.4
GSVIVG01018020001 Vitis vinifera HOM05D000088 ORTHO05D000830 8.7e-07 56.6 48 56.2
Thecc.04G236300 Theobroma cacao HOM05D000088 ORTHO05D000830 1.1e-06 56.2 47 55.3
BcaC08g44273 Brassica carinata HOM05D000088 ORTHO05D000830 1.9e-06 55.5 40 60.0
BraA05t20577Z Brassica rapa HOM05D000088 ORTHO05D000830 1.9e-06 55.5 40 60.0
Potri.008G156000 Populus trichocarpa HOM05D000088 ORTHO05D000830 1.9e-06 55.5 47 57.4
Duzib151G1094 Durio zibethinus HOM05D000088 ORTHO05D000830 2.5e-06 55.1 47 53.2
Manes.03G175000 Manihot esculenta HOM05D000088 ORTHO05D000830 2.5e-06 55.1 40 62.5
SalBow3G2014 Salvia bowleyana HOM05D000088 ORTHO05D000830 2.5e-06 55.1 47 51.1
Sp7g12910 Schrenkiella parvula HOM05D000088 ORTHO05D000830 2.5e-06 55.1 40 57.5
BolC2t11805H Brassica oleracea HOM05D001077 ORTHO05D019874 3.3e-06 54.7 40 60.0
Cc03_g04110 Coffea canephora HOM05D000088 ORTHO05D000830 3.3e-06 54.7 47 53.2
Duzib212G0242 Durio zibethinus HOM05D000088 ORTHO05D000830 4.3e-06 54.3 47 53.2
ECA240G1081 Erigeron canadensis HOM05D000088 ORTHO05D000830 4.3e-06 54.3 48 52.1
Eucgr.H03426 Eucalyptus grandis HOM05D000088 ORTHO05D000830 4.3e-06 54.3 47 53.2
Peaxi162Scf00092g00020 Petunia axillaris HOM05D000088 ORTHO05D000830 4.3e-06 54.3 47 53.2
Sabra08G0118800 Salix brachista HOM05D000088 ORTHO05D000830 4.3e-06 54.3 47 55.3
CANSAT25G0320 Cannabis sativa HOM05D000088 ORTHO05D000830 5.6e-06 53.9 40 62.5
FvH4_4g00810 Fragaria vesca HOM05D000088 ORTHO05D000830 5.6e-06 53.9 47 51.1
FAN12G0717 Fragaria x ananassa HOM05D000088 ORTHO05D000830 5.6e-06 53.9 47 51.1
FAN22G0493 Fragaria x ananassa HOM05D000088 ORTHO05D000830 5.6e-06 53.9 47 51.1
Gohir.D02G040300 Gossypium hirsutum HOM05D000088 ORTHO05D000830 5.6e-06 53.9 47 53.2
Gohir.D09G220500 Gossypium hirsutum HOM05D000088 ORTHO05D000830 5.6e-06 53.9 48 52.1
Gorai.005G044700 Gossypium raimondii HOM05D000088 ORTHO05D000830 5.6e-06 53.9 47 53.2
Gorai.006G241500 Gossypium raimondii HOM05D000088 ORTHO05D000830 5.6e-06 53.9 48 52.1
Sabra10G0059500 Salix brachista HOM05D000088 ORTHO05D000830 5.6e-06 53.9 47 53.2
AT3G22750 Arabidopsis thaliana HOM05D000088 ORTHO05D000830 7.4e-06 53.5 40 57.5
AT4G14780 Arabidopsis thaliana HOM05D000088 ORTHO05D000830 7.4e-06 53.5 47 53.2
Cpa.g.sc41.67 Carica papaya HOM05D000088 ORTHO05D000830 7.4e-06 53.5 48 52.1
DCAR_030678 Daucus carota HOM05D000088 ORTHO05D000830 7.4e-06 53.5 48 47.9
CiPaw.01G197400 Carya illinoinensis HOM05D000088 ORTHO05D000830 9.6e-06 53.1 47 51.1
Nitab4.5_0002406g0030 Nicotiana tabacum HOM05D000088 ORTHO05D000830 9.6e-06 53.1 47 51.1
Prupe.1G019000 Prunus persica HOM05D000088 ORTHO05D000830 9.6e-06 53.1 47 51.1
SalBow2G1946 Salvia bowleyana HOM05D000088 ORTHO05D000830 9.6e-06 53.1 48 50.0
TPR.G37876 Trifolium pratense HOM05D000088 ORTHO05D000830 9.6e-06 53.1 47 55.3


User provided reference genes

Program Settings