Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g28522 Brassica carinata HOM05D007022 ORTHO05D008868 2.0e-106 389.0 185 100.0
BolC5t33329H Brassica oleracea HOM05D007022 ORTHO05D008868 4.9e-105 384.4 185 98.9
A05p30420 Brassica napus HOM05D007022 ORTHO05D008868 1.2e-100 369.8 186 95.7
BraA05t21880Z Brassica rapa HOM05D007022 ORTHO05D008868 1.2e-100 369.8 186 95.7
BcaB06g25978 Brassica carinata HOM05D007022 ORTHO05D008868 4.3e-93 344.7 183 89.6
Carub.0003s1905 Capsella rubella HOM05D007022 ORTHO05D008868 3.6e-92 341.7 188 88.8
Sp3g17290 Schrenkiella parvula HOM05D007022 ORTHO05D008868 6.2e-92 340.9 188 87.8
AT3G19220 Arabidopsis thaliana HOM05D007022 ORTHO05D008868 1.1e-91 340.1 188 87.8
Thhalv10021599m.g Eutrema salsugineum HOM05D007022 ORTHO05D008868 1.8e-91 339.3 188 87.8
AL3G32600 Arabidopsis lyrata HOM05D007022 ORTHO05D008868 1.2e-90 336.7 188 87.2
Aa31LG8G6010 Aethionema arabicum HOM05D007022 ORTHO05D008868 1.6e-84 316.2 188 83.5
CiPaw.06G172800 Carya illinoinensis HOM05D007022 ORTHO05D008868 8.7e-54 214.2 196 57.1
GSVIVG01031751001 Vitis vinifera HOM05D007022 ORTHO05D008868 1.5e-53 213.4 198 57.1
Cpa.g.sc62.15 Carica papaya HOM05D007022 ORTHO05D008868 3.7e-52 208.8 202 55.9
vmacro02203 Vaccinium macrocarpon HOM05D007022 ORTHO05D008868 4.8e-52 208.4 198 58.1
Actinidia12953 Actinidia chinensis HOM05D007022 ORTHO05D008868 2.4e-51 206.1 171 61.4
MBI06_g36648_MAGBIO Magnolia biondii HOM05D007022 ORTHO05D008868 2.0e-50 203.0 181 59.7
CARHR094630 Cardamine hirsuta HOM05D007022 ORTHO05D008868 5.9e-50 201.4 123 82.1
Rhsim11G0166300 Rhododendron simsii HOM05D007022 ORTHO05D008868 5.9e-50 201.4 179 59.8
CDE04G2473 Ceratophyllum demersum HOM05D007022 ORTHO05D008868 1.0e-49 200.7 176 60.2
QL11p035981 Quercus lobata HOM05D007022 ORTHO05D008868 1.7e-49 199.9 154 63.6
Ciclev10029362m.g Citrus clementina HOM05D007022 ORTHO05D008868 2.9e-49 199.1 173 57.2
Manes.07G082700 Manihot esculenta HOM05D007022 ORTHO05D008868 5.0e-49 198.4 199 52.3
PGR042G2146 Punica granatum HOM05D007022 ORTHO05D008868 8.5e-49 197.6 188 55.3
Migut.B00344 Erythranthe guttata HOM05D007022 ORTHO05D008868 1.1e-48 197.2 186 54.8
Thecc.02G100400 Theobroma cacao HOM05D007022 ORTHO05D008868 1.1e-48 197.2 191 56.5
Hma1.2p1_0370F.1_g137830 Hydrangea macrophylla HOM05D007022 ORTHO05D008868 1.4e-48 196.8 190 56.3
Haze_10076 Corylus avellana HOM05D007022 ORTHO05D008868 1.9e-48 196.4 220 49.1
Nitab4.5_0002543g0040 Nicotiana tabacum HOM05D007022 ORTHO05D008868 1.9e-48 196.4 182 57.1
COL.COLO4_32660 Corchorus olitorius HOM05D007022 ORTHO05D003154 2.5e-48 196.1 175 58.3
Potri.009G102400 Populus trichocarpa HOM05D007022 ORTHO05D008868 2.5e-48 196.1 192 53.6
Nn1g04883 Nelumbo nucifera HOM05D007022 ORTHO05D008868 4.2e-48 195.3 165 60.0
TAR381G0954 Trochodendron aralioides HOM05D007022 ORTHO05D008868 4.2e-48 195.3 163 59.5
MSTRG.27723 Avicennia marina HOM05D007022 ORTHO05D008868 5.5e-48 194.9 171 57.9
Nitab4.5_0007480g0010 Nicotiana tabacum HOM05D007022 ORTHO05D008868 5.5e-48 194.9 170 60.0
Oeu007283.1 Olea europaea HOM05D007022 ORTHO05D008868 9.3e-48 194.1 178 57.9
Dinv42154 Davidia involucrata HOM05D007022 ORTHO05D008868 1.6e-47 193.4 173 59.0
THA.LOC104798819 Tarenaya hassleriana HOM05D007022 ORTHO05D008868 2.1e-47 193.0 187 57.2
unitig_26.g10239 Utricularia gibba HOM05D007022 ORTHO05D008868 2.1e-47 193.0 162 59.9
Dinv23619 Davidia involucrata HOM05D007022 ORTHO05D008868 2.7e-47 192.6 181 58.0
Cc02_g18740 Coffea canephora HOM05D007022 ORTHO05D008868 3.6e-47 192.2 198 51.5
Gohir.A13G040100 Gossypium hirsutum HOM05D007022 ORTHO05D008868 3.6e-47 192.2 192 56.2
SalBow6G3975 Salvia bowleyana HOM05D007022 ORTHO05D008868 3.6e-47 192.2 174 57.5
Gohir.D13G038800 Gossypium hirsutum HOM05D007022 ORTHO05D008868 1.0e-46 190.7 192 56.2
Gorai.013G043500 Gossypium raimondii HOM05D007022 ORTHO05D008868 1.0e-46 190.7 192 56.2
Solyc01g108200.3 Solanum lycopersicum HOM05D007022 ORTHO05D008868 1.3e-46 190.3 142 64.1
Sopen01g050430 Solanum pennellii HOM05D007022 ORTHO05D008868 1.3e-46 190.3 142 64.1
Nn5g30258 Nelumbo nucifera HOM05D007022 ORTHO05D008868 5.1e-46 188.3 162 58.0
Aqoxy6G01341 Aquilegia oxysepala HOM05D007022 ORTHO05D008868 8.7e-46 187.6 194 50.0
SGA_v2.0_scaffold13G06591 Striga asiatica HOM05D007022 ORTHO05D008868 1.1e-45 187.2 189 51.9
VMungo0251G0366 Vigna mungo HOM05D007022 ORTHO05D008868 1.6e-44 183.3 183 57.4
CANSAT25G3754 Cannabis sativa HOM05D007022 ORTHO05D008868 2.4e-43 179.5 182 53.8
TWI75G1380 Tripterygium wilfordii HOM05D007022 ORTHO05D008868 3.1e-43 179.1 192 53.1
Actinidia00443 Actinidia chinensis HOM05D007022 ORTHO05D008868 6.9e-43 177.9 170 57.1
Lj4g0019449 Lotus japonicus HOM05D007022 ORTHO05D008868 9.1e-43 177.6 176 53.4
Atru.chr5.2709 Acer truncatum HOM05D007022 ORTHO05D008868 2.6e-42 176.0 172 52.9
MD10G1094200 Malus domestica HOM05D007022 ORTHO05D008868 3.4e-42 175.6 179 53.6
Prupe.8G124000 Prunus persica HOM05D007022 ORTHO05D008868 3.4e-42 175.6 191 51.3
Peaxi162Scf00016g01823 Petunia axillaris HOM05D007022 ORTHO05D008868 4.5e-42 175.3 157 58.6
HPP92_016383 Vanilla planifolia HOM05D002198 ORTHO05D008868 4.5e-42 175.3 109 70.6
Sopen10g021420 Solanum pennellii HOM05D007022 ORTHO05D008868 6.5e-41 171.4 97 77.3
ECA240G1411 Erigeron canadensis HOM05D007022 ORTHO05D008868 8.5e-41 171.0 188 50.0
RcHm_v2.0_Chr6g0257061 Rosa chinensis HOM05D007022 ORTHO05D008868 8.5e-41 171.0 187 53.5
PSO675G2542 Papaver somniferum HOM05D007022 ORTHO05D008868 1.1e-40 170.6 169 51.5
Lj9A358T46 Lonicera japonica HOM05D007022 ORTHO05D008868 1.9e-40 169.9 164 56.1
Glyma.07G212100 Glycine max HOM05D007022 ORTHO05D008868 2.5e-40 169.5 179 52.5
PSO541G2619 Papaver somniferum HOM05D007022 ORTHO05D008868 2.5e-40 169.5 107 72.9
CSS0015269 Camellia sinensis var. sinensis HOM05D007022 ORTHO05D008868 4.2e-40 168.7 192 50.5
FvH4_2g06130 Fragaria vesca HOM05D007022 ORTHO05D008868 5.5e-40 168.3 186 52.7
Glyma.02G132900 Glycine max HOM05D007022 ORTHO05D008868 5.5e-40 168.3 170 53.5
Phvul.003G292600 Phaseolus vulgaris HOM05D007022 ORTHO05D008868 5.5e-40 168.3 170 54.7
MELO3C019509.2 Cucumis melo HOM05D007022 ORTHO05D008868 7.2e-40 167.9 107 71.0
HanXRQChr09g0251721 Helianthus annuus HOM05D007022 ORTHO05D008868 9.4e-40 167.5 106 72.6
CsaV3_3G018570 Cucumis sativus L. HOM05D007022 ORTHO05D008868 1.6e-39 166.8 122 66.4
ClCG05G010000 Citrullus lanatus HOM05D007022 ORTHO05D008868 2.7e-39 166.0 183 51.4
Lsat_1_v5_gn_9_110080 Lactuca sativa HOM05D007022 ORTHO05D008868 2.7e-39 166.0 138 58.7
Lalb_Chr16g0384701 Lupinus albus HOM05D007022 ORTHO05D008868 2.7e-39 166.0 181 50.8
Zm00001eb100830 Zea mays HOM05D007022 ORTHO05D008868 3.6e-39 165.6 188 48.4
Sed0002892 Sechium edule HOM05D007022 ORTHO05D008868 1.8e-38 163.3 125 63.2
Ca_18680_v3 Cicer arietinum L. HOM05D007022 ORTHO05D008868 5.1e-38 161.8 189 46.0
PGSC0003DMG401025892 Solanum tuberosum HOM05D007022 ORTHO05D008868 8.8e-38 161.0 87 78.2
arahy.Tifrunner.gnm1.ann1.WB2CJ6 Arachis hypogaea HOM05D007022 ORTHO05D008868 4.4e-37 158.7 104 70.2
arahy.Tifrunner.gnm1.ann1.059Z6S Arachis hypogaea HOM05D007022 ORTHO05D008868 5.7e-37 158.3 111 66.7
Psat7g125000 Pisum sativum HOM05D007022 ORTHO05D008868 9.7e-37 157.5 168 47.6
Sc08g0000700 Simmondsia chinensis HOM05D005091 ORTHO05D006047 9.7e-37 157.5 127 60.6
FAN24G2553 Fragaria x ananassa HOM05D007022 ORTHO05D008868 1.3e-36 157.1 167 53.3
Oeu013707.1 Olea europaea HOM05D007022 ORTHO05D008868 1.7e-36 156.8 156 53.2
FAN15G0654 Fragaria x ananassa HOM05D007022 ORTHO05D008868 2.2e-36 156.4 166 53.0
EL10Ac9g21683 Beta vulgaris HOM05D007022 ORTHO05D008868 3.7e-36 155.6 160 50.6
FAN20G2768 Fragaria x ananassa HOM05D007022 ORTHO05D008868 1.4e-35 153.7 165 50.3
Hund00236 Selenicereus undatus HOM05D007022 ORTHO05D008868 5.3e-35 151.8 143 53.1
TPR.G28492 Trifolium pratense HOM05D007022 ORTHO05D008868 6.9e-35 151.4 126 59.5
Ah.01g019040 Amaranthus hybridus HOM05D007022 ORTHO05D008868 7.7e-34 147.9 138 55.1
ATR0100G054 Amborella trichopoda HOM05D007022 ORTHO05D008868 2.2e-33 146.4 87 72.4
CDE03G0325 Ceratophyllum demersum HOM05D007022 ORTHO05D008868 3.8e-33 145.6 75 85.3
CBR_g29933 Chara braunii HOM05D007022 ORTHO05D008868 7.9e-31 137.9 127 52.0
Nitab4.5_0005758g0030 Nicotiana tabacum HOM05D007022 ORTHO05D008868 1.8e-30 136.7 137 51.8
Os09g0458400 Oryza sativa ssp. japonica HOM05D007022 ORTHO05D008868 3.9e-30 135.6 176 42.6
Medtr4g086255 Medicago truncatula HOM05D007022 ORTHO05D008868 6.3e-28 128.3 137 50.4
AagrBONN_evm.TU.Sc2ySwM_368.1030 Anthoceros agrestis HOM05D007022 ORTHO05D008868 8.2e-28 127.9 110 51.8
AUR62016784 Chenopodium quinoa HOM05D007022 ORTHO05D008868 5.3e-27 125.2 108 54.6
Nitab4.5_0012979g0010 Nicotiana tabacum HOM05D007022 ORTHO05D008868 7.0e-27 124.8 140 49.3
Pp3c1_42880 Physcomitrium patens HOM05D007022 ORTHO05D008868 9.1e-27 124.4 157 45.2
Pp3c2_400 Physcomitrium patens HOM05D007022 ORTHO05D008868 1.5e-24 117.1 134 46.3
SMO232G0067 Selaginella moellendorffii HOM05D007022 ORTHO05D008868 1.9e-24 116.7 95 53.7
Mapoly0186s0009 Marchantia polymorpha HOM05D007022 ORTHO05D008868 3.2e-24 115.9 186 39.8
Sopen10g021450 Solanum pennellii HOM05D007022 ORTHO05D008868 1.4e-19 100.5 119 47.9
Cfa004517 Carpinus fangiana HOM05D007022 ORTHO05D008868 1.2e-18 97.4 128 43.8
Sabra09G0078400 Salix brachista HOM05D007022 ORTHO05D008868 2.0e-18 96.7 200 38.0
SEGI_10031 Sequoiadendron giganteum HOM05D007022 ORTHO05D008868 2.2e-17 93.2 67 64.2
DCAR_022028 Daucus carota HOM05D007022 ORTHO05D008868 5.5e-16 88.6 135 44.4
Rhsim11G0166200 Rhododendron simsii HOM05D007022 ORTHO05D008868 7.2e-16 88.2 69 65.2
ECA240G0576 Erigeron canadensis HOM05D007022 ORTHO05D008868 2.2e-12 76.6 123 42.3
PGSC0003DMG400006210 Solanum tuberosum HOM05D007022 ORTHO05D008868 7.0e-11 71.6 107 39.3
Cre07.g339200 Chlamydomonas reinhardtii HOM05D007022 ORTHO05D008868 3.0e-06 56.2 62 37.1


User provided reference genes

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