Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g28470 Brassica carinata HOM05D007211 ORTHO05D009060 3.2e-40 167.9 82 100.0
BolC5t33279H Brassica oleracea HOM05D007211 ORTHO05D009060 3.2e-40 167.9 82 100.0
A05p30110 Brassica napus HOM05D002228 ORTHO05D002347 5.4e-40 167.2 82 98.8
C05p45540 Brassica napus HOM05D007211 ORTHO05D009060 5.4e-40 167.2 82 98.8
BraA05t21851Z Brassica rapa HOM05D002228 ORTHO05D002347 5.4e-40 167.2 82 98.8
BcaC09g48904 Brassica carinata HOM05D007211 ORTHO05D009060 6.0e-39 163.7 82 95.1
A01p35210 Brassica napus HOM05D007211 ORTHO05D009060 6.0e-39 163.7 82 95.1
BraA01t03602Z Brassica rapa HOM05D007211 ORTHO05D009060 6.0e-39 163.7 82 95.1
BcaC09g48910 Brassica carinata HOM05D002228 ORTHO05D002347 1.3e-38 162.5 82 93.9
C01p44630 Brassica napus HOM05D007211 ORTHO05D009060 1.3e-38 162.5 82 93.9
BolC1t04431H Brassica oleracea HOM05D007211 ORTHO05D009060 1.3e-38 162.5 82 93.9
BcaB06g26010 Brassica carinata HOM05D007211 ORTHO05D009060 3.9e-38 161.0 82 93.9
Sp3g17560 Schrenkiella parvula HOM05D007211 ORTHO05D009060 6.6e-38 160.2 82 93.9
CARHR094930 Cardamine hirsuta HOM05D007211 ORTHO05D009060 1.1e-37 159.5 82 93.9
AL3G32910 Arabidopsis lyrata HOM05D007211 ORTHO05D009060 3.3e-37 157.9 82 93.9
Carub.0003s1931 Capsella rubella HOM05D007211 ORTHO05D009060 7.3e-37 156.8 82 92.7
AT3G19508 Arabidopsis thaliana HOM05D007211 ORTHO05D009060 1.6e-36 155.6 82 91.5
Aa31LG8G6260 Aethionema arabicum HOM05D007211 ORTHO05D009060 1.4e-35 152.5 82 89.0
Potri.001G299200 Populus trichocarpa HOM05D007211 ORTHO05D009060 2.5e-29 131.7 80 80.0
Cpa.g.sc106.108 Carica papaya HOM05D007211 ORTHO05D009060 3.3e-29 131.3 83 74.7
Manes.10G075811 Manihot esculenta HOM05D007211 ORTHO05D009060 7.3e-29 130.2 80 77.5
Manes.10G076037 Manihot esculenta HOM05D007211 ORTHO05D009060 7.3e-29 130.2 80 77.5
Duzib248G0207 Durio zibethinus HOM05D007211 ORTHO05D009060 9.6e-29 129.8 82 75.6
Gohir.A13G044300 Gossypium hirsutum HOM05D007211 ORTHO05D009060 9.6e-29 129.8 81 76.5
TWI31G1006 Tripterygium wilfordii HOM05D007211 ORTHO05D009060 1.3e-28 129.4 83 77.1
QL11p032854 Quercus lobata HOM05D007211 ORTHO05D009060 1.6e-28 129.0 81 76.5
Haze_10197 Corylus avellana HOM05D007211 ORTHO05D009060 2.1e-28 128.6 81 75.3
Lsat_1_v5_gn_9_112060 Lactuca sativa HOM05D007211 ORTHO05D009060 2.1e-28 128.6 80 75.0
CiPaw.06G168700 Carya illinoinensis HOM05D007211 ORTHO05D009060 2.8e-28 128.3 80 76.2
ClCG05G010330 Citrullus lanatus HOM05D007211 ORTHO05D009060 3.6e-28 127.9 83 73.5
COL.COLO4_32576 Corchorus olitorius HOM05D007211 ORTHO05D009060 3.6e-28 127.9 81 74.1
MELO3C019551.2 Cucumis melo HOM05D007211 ORTHO05D009060 3.6e-28 127.9 83 74.7
Eucgr.I01095 Eucalyptus grandis HOM05D007211 ORTHO05D009060 4.8e-28 127.5 80 76.2
Potri.009G094200 Populus trichocarpa HOM05D007211 ORTHO05D009060 4.8e-28 127.5 80 77.5
Sabra09G0072500 Salix brachista HOM05D007211 ORTHO05D009060 4.8e-28 127.5 80 77.5
Thecc.02G110400 Theobroma cacao HOM05D007211 ORTHO05D009060 4.8e-28 127.5 80 76.2
CANSAT25G1462 Cannabis sativa HOM05D007211 ORTHO05D009060 6.2e-28 127.1 83 71.1
CANSAT25G3598 Cannabis sativa HOM05D007211 ORTHO05D009060 6.2e-28 127.1 83 71.1
PSO541G5220 Papaver somniferum HOM05D007211 ORTHO05D009060 1.1e-27 126.3 81 74.1
CsaV3_3G018160 Cucumis sativus L. HOM05D007211 ORTHO05D009060 1.8e-27 125.6 81 74.1
Gorai.013G048100 Gossypium raimondii HOM05D007211 ORTHO05D009060 1.8e-27 125.6 80 75.0
PGR142G3039 Punica granatum HOM05D007211 ORTHO05D009060 1.8e-27 125.6 83 74.7
Gohir.D13G043400 Gossypium hirsutum HOM05D007211 ORTHO05D009060 2.4e-27 125.2 80 75.0
Atru.chr5.2471 Acer truncatum HOM05D007211 ORTHO05D009060 3.1e-27 124.8 80 75.0
Hund00155 Selenicereus undatus HOM05D000364 ORTHO05D009060 3.1e-27 124.8 80 72.5
BcaB04g20701 Brassica carinata HOM05D002228 ORTHO05D002347 6.9e-27 123.6 91 72.5
Nn1g04662 Nelumbo nucifera HOM05D007211 ORTHO05D009060 6.9e-27 123.6 80 73.8
HanXRQChr03g0068751 Helianthus annuus HOM05D007211 ORTHO05D009060 1.2e-26 122.9 80 72.5
Ciclev10029710m.g Citrus clementina HOM05D007211 ORTHO05D009060 1.5e-26 122.5 80 72.5
TWI79G1551 Tripterygium wilfordii HOM05D007211 ORTHO05D009060 2.0e-26 122.1 80 70.0
CSS0010427 Camellia sinensis var. sinensis HOM05D007211 ORTHO05D009060 2.6e-26 121.7 80 72.5
CSS0021869 Camellia sinensis var. sinensis HOM05D007211 ORTHO05D009060 2.6e-26 121.7 80 72.5
GSVIVG01037902001 Vitis vinifera HOM05D007211 ORTHO05D009060 4.5e-26 120.9 80 70.0
BcaC09g48905 Brassica carinata HOM05D007211 ORTHO05D009060 1.3e-25 119.4 92 71.7
unitig_0.g876 Utricularia gibba HOM05D007211 ORTHO05D009060 1.3e-25 119.4 80 73.8
Aqoxy6G02839 Aquilegia oxysepala HOM05D007211 ORTHO05D009060 1.7e-25 119.0 83 69.9
ECA240G2095 Erigeron canadensis HOM05D007211 ORTHO05D009060 2.2e-25 118.6 80 70.0
Sed0014592 Sechium edule HOM05D007211 ORTHO05D009060 2.2e-25 118.6 80 67.5
Migut.B00396 Erythranthe guttata HOM05D007211 ORTHO05D009060 2.9e-25 118.2 80 70.0
MD00G1109400 Malus domestica HOM05D007211 ORTHO05D009060 2.9e-25 118.2 83 67.5
MD04G1005100 Malus domestica HOM05D007211 ORTHO05D009060 2.9e-25 118.2 83 67.5
Sc14g0001880 Simmondsia chinensis HOM05D007211 ORTHO05D009060 2.9e-25 118.2 80 67.5
Hma1.2p1_1518F.1_g288450 Hydrangea macrophylla HOM05D007211 ORTHO05D009060 3.8e-25 117.9 80 71.2
Prupe.8G136900 Prunus persica HOM05D007211 ORTHO05D009060 3.8e-25 117.9 80 70.0
BcaC09g48902 Brassica carinata HOM05D007211 ORTHO05D009060 4.9e-25 117.5 107 61.7
TAR376G0209 Trochodendron aralioides HOM05D007211 ORTHO05D009060 6.4e-25 117.1 80 68.8
arahy.Tifrunner.gnm1.ann1.0PG00T Arachis hypogaea HOM05D007211 ORTHO05D009060 8.4e-25 116.7 80 71.2
arahy.Tifrunner.gnm1.ann1.YF4EPK Arachis hypogaea HOM05D007211 ORTHO05D009060 8.4e-25 116.7 80 71.2
vmacro01995 Vaccinium macrocarpon HOM05D007211 ORTHO05D009060 8.4e-25 116.7 80 70.0
Oeu013758.1 Olea europaea HOM05D007211 ORTHO05D009060 1.4e-24 115.9 80 68.8
RcHm_v2.0_Chr6g0254661 Rosa chinensis HOM05D007211 ORTHO05D009060 1.4e-24 115.9 80 70.0
DCAR_029091 Daucus carota HOM05D007211 ORTHO05D009060 1.9e-24 115.5 80 68.8
Psat4g228560 Pisum sativum HOM05D007211 ORTHO05D009060 1.9e-24 115.5 80 70.0
RcHm_v2.0_Chr6g0254711 Rosa chinensis HOM05D007211 ORTHO05D009060 1.9e-24 115.5 80 70.0
Actinidia34396 Actinidia chinensis HOM05D007211 ORTHO05D009060 2.4e-24 115.2 80 68.8
arahy.Tifrunner.gnm1.ann1.UEWU3Q Arachis hypogaea HOM05D007211 ORTHO05D009060 2.4e-24 115.2 80 70.0
Lj1g0022136 Lotus japonicus HOM05D007211 ORTHO05D009060 2.4e-24 115.2 80 68.8
Nitab4.5_0001480g0150 Nicotiana tabacum HOM05D007211 ORTHO05D009060 2.4e-24 115.2 80 67.5
EL10Ac9g22259 Beta vulgaris HOM05D007211 ORTHO05D009060 3.2e-24 114.8 80 65.0
Rhsim11G0158600 Rhododendron simsii HOM05D007211 ORTHO05D009060 3.2e-24 114.8 80 68.8
TPR.G21608 Trifolium pratense HOM05D007211 ORTHO05D009060 5.4e-24 114.0 80 70.0
Cc02_g19360 Coffea canephora HOM05D007211 ORTHO05D009060 7.1e-24 113.6 80 67.5
FAN15G0614 Fragaria x ananassa HOM05D000062 ORTHO05D000043 7.1e-24 113.6 82 67.1
Oeu029529.1 Olea europaea HOM05D007211 ORTHO05D009060 7.1e-24 113.6 80 68.8
PGSC0003DMG400025763 Solanum tuberosum HOM05D007211 ORTHO05D009060 7.1e-24 113.6 83 65.1
FvH4_2g04840 Fragaria vesca HOM05D007211 ORTHO05D009060 1.2e-23 112.8 83 66.3
Glyma.01G243800 Glycine max HOM05D007211 ORTHO05D009060 1.2e-23 112.8 79 69.6
Ca_24347_v3 Cicer arietinum L. HOM05D007211 ORTHO05D009060 1.6e-23 112.5 80 68.8
FAN24G1282 Fragaria x ananassa HOM05D000062 ORTHO05D000043 1.6e-23 112.5 80 67.5
Medtr5g004970 Medicago truncatula HOM05D007211 ORTHO05D009060 1.6e-23 112.5 80 68.8
Sopen01g049710 Solanum pennellii HOM05D007211 ORTHO05D009060 1.6e-23 112.5 83 63.9
AUR62039062 Chenopodium quinoa HOM05D007211 ORTHO05D009060 2.7e-23 111.7 80 63.8
Lalb_Chr09g0319591 Lupinus albus HOM05D007211 ORTHO05D009060 2.7e-23 111.7 79 70.9
Rhsim11G0157000 Rhododendron simsii HOM05D007211 ORTHO05D009060 4.6e-23 110.9 80 66.2
AUR62010326 Chenopodium quinoa HOM05D007211 ORTHO05D009060 6.0e-23 110.5 80 65.0
FAN27G1079 Fragaria x ananassa HOM05D007211 ORTHO05D009060 1.8e-22 109.0 80 66.2
Phvul.002G053100 Phaseolus vulgaris HOM05D007211 ORTHO05D009060 3.0e-22 108.2 79 68.4
Cfa004601 Carpinus fangiana HOM05D007211 ORTHO05D009060 1.1e-21 106.3 82 63.4
MD05G1023600 Malus domestica HOM05D007211 ORTHO05D009060 1.5e-21 105.9 80 62.5
CDE07G1397 Ceratophyllum demersum HOM05D007211 ORTHO05D009060 1.8e-19 99.0 79 64.6
Os01g0342800 Oryza sativa ssp. japonica HOM05D007211 ORTHO05D009060 1.8e-19 99.0 76 67.1
Nitab4.5_0004326g0030 Nicotiana tabacum HOM05D007211 ORTHO05D009060 2.6e-18 95.1 66 69.7
BcaC09g48907 Brassica carinata HOM05D007211 ORTHO05D009060 3.4e-18 94.7 46 97.8
CAN.G606.15 Capsicum annuum HOM05D007211 ORTHO05D009060 1.0e-17 93.2 65 69.2
Zm00001eb307960 Zea mays HOM05D007211 ORTHO05D009060 8.4e-17 90.1 75 61.3
Sabra16G0187800 Salix brachista HOM05D007211 ORTHO05D009060 1.1e-16 89.7 57 77.2
MD10G1099000 Malus domestica HOM05D007211 ORTHO05D009060 2.5e-16 88.6 69 59.4
MBI16_g16358_MAGBIO Magnolia biondii HOM05D007211 ORTHO05D009060 2.1e-15 85.5 60 68.3
AagrBONN_evm.TU.Sc2ySwM_362.2090 Anthoceros agrestis HOM05D007211 ORTHO05D009060 6.0e-15 84.0 81 50.6
AagrBONN_evm.TU.Sc2ySwM_362.1547 Anthoceros agrestis HOM05D007211 ORTHO05D009060 3.0e-14 81.6 81 50.6
CBR_g972 Chara braunii HOM05D007211 ORTHO05D009060 2.9e-09 65.1 76 43.4
Pp3c17_14820 Physcomitrium patens HOM05D007211 ORTHO05D009060 7.1e-08 60.5 61 49.2
AagrBONN_evm.TU.Sc2ySwM_344.3864 Anthoceros agrestis HOM05D007211 ORTHO05D009060 1.2e-07 59.7 59 47.5
Duzib248G0756 Durio zibethinus HOM05D007211 ORTHO05D009060 1.2e-07 59.7 52 61.5


User provided reference genes

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