Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g28416 Brassica carinata HOM05D005682 ORTHO05D007050 0.0e+00 2074.7 1053 100.0
BolC5t33225H Brassica oleracea HOM05D005682 ORTHO05D007050 0.0e+00 1988.0 1093 94.5
BraA05t21829Z Brassica rapa HOM05D005682 ORTHO05D007050 0.0e+00 1934.1 1086 92.0
BcaB06g26047 Brassica carinata HOM05D005682 ORTHO05D007050 0.0e+00 1845.1 1090 87.6
Sp3g17800 Schrenkiella parvula HOM05D005682 ORTHO05D007050 0.0e+00 1611.7 1092 77.7
C05p45010 Brassica napus HOM05D005682 ORTHO05D007050 0.0e+00 1609.0 880 94.8
AL3G33230 Arabidopsis lyrata HOM05D005682 ORTHO05D007050 0.0e+00 1563.9 1094 75.0
A05p29780 Brassica napus HOM05D005682 ORTHO05D007050 0.0e+00 1553.9 883 91.5
Carub.0003s1966 Capsella rubella HOM05D005682 ORTHO05D007050 0.0e+00 1546.2 1094 74.5
Thhalv10019965m.g Eutrema salsugineum HOM05D005682 ORTHO05D007050 0.0e+00 1512.3 1093 73.8
AT3G19780 Arabidopsis thaliana HOM05D005682 ORTHO05D007050 0.0e+00 1489.2 1095 72.5
Aa31LG8G6560 Aethionema arabicum HOM05D005682 ORTHO05D007050 0.0e+00 1284.2 1085 64.4
THA.LOC104826522 Tarenaya hassleriana HOM05D005682 ORTHO05D007050 0.0e+00 1086.2 1095 56.2
CARHR095300 Cardamine hirsuta HOM05D005682 ORTHO05D007050 3.4e-280 968.8 749 70.9
BraA05t21816Z Brassica rapa HOM05D005682 ORTHO05D007050 2.7e-277 959.1 606 84.8
Duzib132G1218 Durio zibethinus HOM05D005682 ORTHO05D007050 4.7e-229 798.9 1102 43.3
Gorai.013G070900 Gossypium raimondii HOM05D005682 ORTHO05D007050 2.4e-225 786.6 1105 43.2
MD13G1007100 Malus domestica HOM05D005682 ORTHO05D007050 2.1e-224 783.5 1101 43.3
CiPaw.05G167300 Carya illinoinensis HOM05D005682 ORTHO05D007050 6.0e-224 781.9 1116 42.8
Gohir.D13G062400 Gossypium hirsutum HOM05D005682 ORTHO05D007050 1.0e-223 781.2 1105 43.3
BcaC05g28417 Brassica carinata HOM05D005682 ORTHO05D007050 6.6e-223 778.5 463 87.5
Duzib052G0545 Durio zibethinus HOM05D005682 ORTHO05D007050 1.9e-222 776.9 1099 42.1
Gohir.A13G059600 Gossypium hirsutum HOM05D005682 ORTHO05D007050 2.5e-222 776.5 1106 42.9
Prupe.1G345800 Prunus persica HOM05D005682 ORTHO05D007050 2.8e-221 773.1 1108 42.9
Haze_11722 Corylus avellana HOM05D005682 ORTHO05D007050 5.2e-220 768.8 1093 43.1
Sabra07G0059000 Salix brachista HOM05D005682 ORTHO05D007050 5.2e-220 768.8 1106 42.5
GSVIVG01010197001 Vitis vinifera HOM05D005682 ORTHO05D007050 4.4e-219 765.8 1107 42.3
Potri.007G070400 Populus trichocarpa HOM05D005682 ORTHO05D007050 5.8e-219 765.4 1112 42.2
RcHm_v2.0_Chr4g0446491 Rosa chinensis HOM05D005682 ORTHO05D007050 5.4e-217 758.8 1103 41.7
TWI74G0147 Tripterygium wilfordii HOM05D005682 ORTHO05D007050 1.6e-216 757.3 1120 43.0
MELO3C023602.2 Cucumis melo HOM05D005682 ORTHO05D007050 1.8e-212 743.8 1110 41.9
Actinidia04079 Actinidia chinensis HOM05D005682 ORTHO05D007050 5.2e-212 742.3 1123 40.7
FvH4_4g36771 Fragaria vesca HOM05D005682 ORTHO05D007050 1.2e-211 741.1 1108 40.4
ClCG09G004600 Citrullus lanatus HOM05D005682 ORTHO05D007050 2.6e-211 740.0 1107 41.7
CANSAT64G0530 Cannabis sativa HOM05D005682 ORTHO05D007050 2.2e-210 736.9 1127 39.8
FAN17G1521 Fragaria x ananassa HOM05D005682 ORTHO05D007050 2.5e-206 723.4 1100 40.6
Nn4g24940 Nelumbo nucifera HOM05D005682 ORTHO05D007050 6.2e-205 718.8 1110 39.5
PSO063G1542 Papaver somniferum HOM05D005682 ORTHO05D007050 1.8e-204 717.2 1128 40.2
FAN07G1253 Fragaria x ananassa HOM05D005682 ORTHO05D007050 2.0e-203 713.8 1101 40.4
Sed0007950 Sechium edule HOM05D005682 ORTHO05D007050 3.4e-203 713.0 1093 41.4
Phvul.011G031200 Phaseolus vulgaris HOM05D005682 ORTHO05D007050 2.2e-202 710.3 1128 39.5
TAR622G0093 Trochodendron aralioides HOM05D005682 ORTHO05D007050 9.3e-201 704.9 1071 40.3
VMungo1127G0377 Vigna mungo HOM05D005682 ORTHO05D007050 7.9e-200 701.8 1114 39.5
Lj6A721G56 Lonicera japonica HOM05D005682 ORTHO05D007050 1.7e-199 700.7 1097 39.9
Lj3g0015709 Lotus japonicus HOM05D005682 ORTHO05D007050 3.0e-199 699.9 1111 40.2
Glyma.11G102200 Glycine max HOM05D005682 ORTHO05D007050 8.1e-197 691.8 1126 39.2
BcaC05g28407 Brassica carinata HOM05D005682 ORTHO05D007050 1.8e-196 690.6 346 98.8
Lalb_Chr01g0001491 Lupinus albus HOM05D005682 ORTHO05D007050 1.8e-196 690.6 1109 39.7
Sabra07G0059100 Salix brachista HOM05D005682 ORTHO05D007050 1.2e-192 677.9 1057 40.7
TPR.G32358 Trifolium pratense HOM05D005682 ORTHO05D007050 4.6e-192 676.0 1085 39.3
PGR044G2237 Punica granatum HOM05D005682 ORTHO05D007050 1.8e-191 674.1 1102 39.7
DCAR_002567 Daucus carota HOM05D005682 ORTHO05D007050 2.4e-188 663.7 1100 38.8
MSTRG.433 Avicennia marina HOM05D005682 ORTHO05D007050 6.9e-188 662.1 1079 38.6
Eucgr.J00855 Eucalyptus grandis HOM05D005682 ORTHO05D007050 9.0e-188 661.8 1069 39.4
Rhsim09G0074000 Rhododendron simsii HOM05D005682 ORTHO05D007050 2.6e-187 660.2 1113 38.7
HanXRQChr17g0540811 Helianthus annuus HOM05D005682 ORTHO05D007050 1.3e-186 657.9 1097 37.7
CsaV3_7G030540 Cucumis sativus L. HOM05D005682 ORTHO05D007050 6.0e-184 649.0 1028 40.1
Medtr4g074610 Medicago truncatula HOM05D005682 ORTHO05D007050 5.1e-183 646.0 1096 37.9
PSO782G3049 Papaver somniferum HOM05D005682 ORTHO05D007050 5.1e-183 646.0 1070 39.1
Oeu033538.1 Olea europaea HOM05D005682 ORTHO05D007050 4.3e-182 642.9 1111 37.4
Aqoxy2G03805 Aquilegia oxysepala HOM05D005682 ORTHO05D007050 1.6e-181 641.0 1093 37.4
Cfa008712 Carpinus fangiana HOM05D005682 ORTHO05D007050 3.1e-180 636.7 865 45.8
ECA246G2025 Erigeron canadensis HOM05D005682 ORTHO05D007050 1.2e-179 634.8 1099 35.9
QL03p043857 Quercus lobata HOM05D005682 ORTHO05D007050 2.1e-176 624.0 1432 33.5
Lsat_1_v5_gn_3_33580 Lactuca sativa HOM05D005682 ORTHO05D007050 5.1e-175 619.4 1080 36.9
Migut.L00859 Erythranthe guttata HOM05D005682 ORTHO05D007050 1.1e-174 618.2 1114 36.4
Ca_03025_v3 Cicer arietinum L. HOM05D005682 ORTHO05D007050 7.4e-174 615.5 1050 38.5
ATR0618G435 Amborella trichopoda HOM05D005682 ORTHO05D000625 1.4e-172 611.3 1164 34.5
Thecc.02G161600 Theobroma cacao HOM05D005682 ORTHO05D007050 5.3e-172 609.4 890 42.1
Ciclev10030666m.g Citrus clementina HOM05D005682 ORTHO05D007050 6.7e-167 592.4 900 40.6
Ah.14g085910 Amaranthus hybridus HOM05D005682 ORTHO05D007050 8.8e-167 592.0 1089 35.4
Sc06g0007890 Simmondsia chinensis HOM05D005682 ORTHO05D007050 5.7e-166 589.3 1100 36.1
Hund13152 Selenicereus undatus HOM05D005682 ORTHO05D007050 1.5e-163 581.3 1056 37.1
AUR62018178 Chenopodium quinoa HOM05D005682 ORTHO05D007050 3.8e-162 576.6 1199 33.8
vmacro10900 Vaccinium macrocarpon HOM05D005682 ORTHO05D007050 3.8e-162 576.6 1162 34.2
Manes.11G108701 Manihot esculenta HOM05D005682 ORTHO05D007050 1.1e-158 565.1 897 40.2
SalBow2G1379 Salvia bowleyana HOM05D005682 ORTHO05D007050 7.2e-153 545.8 1195 32.9
EL10Ac9g20684 Beta vulgaris HOM05D005682 ORTHO05D007050 1.2e-152 545.0 1050 34.1
arahy.Tifrunner.gnm1.ann1.3I7IYH Arachis hypogaea HOM05D005682 ORTHO05D007050 1.3e-146 525.0 934 38.7
AUR62038663 Chenopodium quinoa HOM05D005682 ORTHO05D007050 1.6e-144 518.1 1073 34.1
Sopen02g009170 Solanum pennellii HOM05D005682 ORTHO05D007050 6.1e-144 516.2 934 36.2
arahy.Tifrunner.gnm1.ann1.H4B4B0 Arachis hypogaea HOM05D005682 ORTHO05D007050 6.3e-141 506.1 775 41.2
Zm00001eb221340 Zea mays HOM05D005682 ORTHO05D007050 2.0e-139 501.1 1218 30.7
Peaxi162Scf00363g00730 Petunia axillaris HOM05D005682 ORTHO05D007050 7.7e-139 499.2 938 35.7
CARHR095290 Cardamine hirsuta HOM05D005682 ORTHO05D007050 8.8e-135 485.7 349 72.8
Psat7g173480 Pisum sativum HOM05D005682 ORTHO05D007050 2.8e-133 480.7 814 39.2
Cc11_g00090 Coffea canephora HOM05D005682 ORTHO05D007050 5.0e-130 469.9 766 38.8
Nitab4.5_0000139g0140 Nicotiana tabacum HOM05D005682 ORTHO05D007050 1.2e-118 432.2 808 36.6
CAN.G157.16 Capsicum annuum HOM05D005682 ORTHO05D007050 7.0e-116 422.9 862 35.6
Atru.chr11.1182 Acer truncatum HOM05D005682 ORTHO05D007050 2.3e-114 417.9 586 42.8
unitig_699.g19973 Utricularia gibba HOM05D005682 ORTHO05D007050 1.9e-113 414.8 1044 31.3
Dinv11711 Davidia involucrata HOM05D005682 ORTHO05D007050 9.5e-105 386.0 476 45.4
A05p29790 Brassica napus HOM05D005682 ORTHO05D007050 1.6e-104 385.2 220 87.7
SEGI_38899 Sequoiadendron giganteum HOM05D005682 ORTHO05D007050 3.2e-100 370.9 1290 26.3
Solyc02g055460.3 Solanum lycopersicum HOM05D005682 ORTHO05D007050 3.5e-99 367.5 701 35.4
Dinv11710 Davidia involucrata HOM05D005682 ORTHO05D007050 2.5e-97 361.3 495 42.8
CDE04G1407 Ceratophyllum demersum HOM05D005682 ORTHO05D007050 2.5e-89 334.7 742 32.5
Hma1.2p1_0499F.1_g166820 Hydrangea macrophylla HOM05D005682 ORTHO05D007050 1.4e-84 318.9 476 41.2
HPP92_008562 Vanilla planifolia HOM05D005682 ORTHO05D007050 7.1e-84 316.6 779 30.8
C05p44920 Brassica napus HOM05D005682 ORTHO05D007050 3.9e-82 310.8 198 81.8
Os10g0485100 Oryza sativa ssp. japonica HOM05D005682 ORTHO05D007050 7.1e-76 290.0 493 36.7
HPP92_008567 Vanilla planifolia HOM05D005682 ORTHO05D007050 3.9e-74 284.3 488 36.5
AagrBONN_evm.TU.Sc2ySwM_340.174 Anthoceros agrestis HOM05D005682 ORTHO05D007050 1.3e-72 279.3 1154 25.0
COL.COLO4_08120 Corchorus olitorius HOM05D005682 ORTHO05D007050 2.1e-72 278.5 777 29.2
SHI13893 Sapria himalayana HOM05D005682 ORTHO05D007050 2.5e-68 265.0 526 36.3
Nitab4.5_0028170g0010 Nicotiana tabacum HOM05D005682 ORTHO05D007050 4.1e-63 247.7 496 36.7
CSS0031646 Camellia sinensis var. sinensis HOM05D005682 ORTHO05D007050 5.7e-57 227.3 346 41.0
CDE04G1313 Ceratophyllum demersum HOM05D005682 ORTHO05D007050 4.5e-54 217.6 286 43.7
COL.COLO4_08119 Corchorus olitorius HOM05D005682 ORTHO05D007050 7.9e-51 206.8 181 54.7
SHI13894 Sapria himalayana HOM05D005682 ORTHO05D007050 1.4e-44 186.0 310 34.2
Solyc02g055470.2 Solanum lycopersicum HOM05D005682 ORTHO05D007050 4.2e-44 184.5 185 51.9
CAN.G157.17 Capsicum annuum HOM05D005682 ORTHO05D007050 5.5e-44 184.1 258 38.0
Cc11_g04390 Coffea canephora HOM05D005682 ORTHO05D007050 5.5e-44 184.1 265 38.9
Sopen02g009200 Solanum pennellii HOM05D005682 ORTHO05D007050 5.5e-44 184.1 185 51.9
BcaC05g28408 Brassica carinata HOM05D005682 ORTHO05D007050 5.7e-41 174.1 117 77.8
Pp3c7_6630 Physcomitrium patens HOM05D005682 ORTHO05D007050 2.8e-40 171.8 1030 23.8
CSS0001307 Camellia sinensis var. sinensis HOM05D005682 ORTHO05D007050 1.9e-36 159.1 214 41.1
CSS0028316 Camellia sinensis var. sinensis HOM05D005682 ORTHO05D007050 1.9e-36 159.1 280 37.9
SMO367G0225 Selaginella moellendorffii HOM05D004192 ORTHO05D004917 2.4e-31 142.1 587 25.6
Nitab4.5_0002392g0020 Nicotiana tabacum HOM05D005682 ORTHO05D007050 3.1e-31 141.7 203 41.4
Nitab4.5_0000139g0150 Nicotiana tabacum HOM05D005682 ORTHO05D007050 8.5e-29 133.7 128 53.1
Nitab4.5_0002392g0030 Nicotiana tabacum HOM05D005682 ORTHO05D007050 2.5e-28 132.1 193 39.4
CSS0026201 Camellia sinensis var. sinensis HOM05D005682 ORTHO05D007050 2.6e-25 122.1 140 47.9
Cc11_g00100 Coffea canephora HOM05D005682 ORTHO05D007050 4.8e-24 117.9 184 39.7
SHI13892 Sapria himalayana HOM05D005682 ORTHO05D007050 4.8e-24 117.9 167 38.3
Peaxi162Scf00363g00073 Petunia axillaris HOM05D005682 ORTHO05D007050 7.2e-20 104.0 109 49.5
C05p44850 Brassica napus HOM05D002209 ORTHO05D007926 2.4e-15 89.0 64 75.0
C05p44840 Brassica napus HOM05D005682 ORTHO05D007050 1.6e-14 86.3 41 87.8
CBR_g66815 Chara braunii HOM05D005682 ORTHO05D007050 1.2e-11 76.6 138 31.2
Aqoxy2G03797 Aquilegia oxysepala HOM05D005682 ORTHO05D007050 3.0e-10 72.0 91 38.5
FvH4_4g15932 Fragaria vesca HOM05D005682 ORTHO05D007050 2.0e-09 69.3 103 40.8
FvH4_6g37553 Fragaria vesca HOM05D005682 ORTHO05D007050 2.0e-09 69.3 56 58.9
ECA247G3374 Erigeron canadensis HOM05D002497 ORTHO05D002697 2.9e-08 65.5 163 31.9
Lsat_1_v5_gn_1_25241 Lactuca sativa HOM05D002497 ORTHO05D002697 3.7e-08 65.1 153 31.4
EL10Ac1g01641 Beta vulgaris HOM05D002497 ORTHO05D002697 4.9e-08 64.7 149 30.9
Aa31LG6G8110 Aethionema arabicum HOM05D002497 ORTHO05D002697 6.4e-08 64.3 159 32.1
HPP92_008566 Vanilla planifolia HOM05D005682 ORTHO05D007050 1.4e-07 63.2 170 29.4
ATR1089G083 Amborella trichopoda HOM05D002497 ORTHO05D002697 2.4e-07 62.4 184 28.3
PSO782G4228 Papaver somniferum HOM05D002497 ORTHO05D002697 2.4e-07 62.4 157 29.3
MSTRG.1584 Avicennia marina HOM05D002497 ORTHO05D002697 4.1e-07 61.6 151 27.8
Os01g0886000 Oryza sativa ssp. japonica HOM05D002497 ORTHO05D002697 5.4e-07 61.2 231 28.6
Sp1g29120 Schrenkiella parvula HOM05D002497 ORTHO05D002697 5.4e-07 61.2 160 31.2
Carub.0001s3196 Capsella rubella HOM05D002497 ORTHO05D002697 7.0e-07 60.8 155 29.0
Migut.C01356 Erythranthe guttata HOM05D002497 ORTHO05D002697 7.0e-07 60.8 174 29.3
Oeu023207.2 Olea europaea HOM05D002497 ORTHO05D002697 7.0e-07 60.8 153 33.3
DCAR_003518 Daucus carota HOM05D002497 ORTHO05D002697 9.2e-07 60.5 153 28.8
HanXRQChr04g0102671 Helianthus annuus HOM05D002497 ORTHO05D002697 9.2e-07 60.5 156 32.1
Zm00001eb366020 Zea mays HOM05D002497 ORTHO05D002697 9.2e-07 60.5 152 30.9
Psat1g003240 Pisum sativum HOM05D002497 ORTHO05D002697 1.2e-06 60.1 156 28.2
Aqoxy6G00077 Aquilegia oxysepala HOM05D002497 ORTHO05D002697 1.6e-06 59.7 165 30.3
Prupe.1G546400 Prunus persica HOM05D002497 ORTHO05D002697 1.6e-06 59.7 153 30.7
Cfa008107 Carpinus fangiana HOM05D002497 ORTHO05D002697 2.0e-06 59.3 242 27.3
CARHR033180 Cardamine hirsuta HOM05D002497 ORTHO05D002697 2.7e-06 58.9 155 29.7
CDE04G3328 Ceratophyllum demersum HOM05D002497 ORTHO05D002697 2.7e-06 58.9 155 28.4
AUR62022397 Chenopodium quinoa HOM05D002497 ORTHO05D002697 2.7e-06 58.9 150 29.3
AUR62034303 Chenopodium quinoa HOM05D002497 ORTHO05D002697 2.7e-06 58.9 150 29.3
MBI03_g36667_MAGBIO Magnolia biondii HOM05D002497 ORTHO05D002697 2.7e-06 58.9 158 30.4
Sed0011145 Sechium edule HOM05D002497 ORTHO05D002697 2.7e-06 58.9 157 29.3
SGA_v2.0_scaffold118G32587 Striga asiatica HOM05D002497 ORTHO05D002697 3.5e-06 58.5 192 26.0
AT1G33780 Arabidopsis thaliana HOM05D002497 ORTHO05D002697 4.6e-06 58.2 155 28.4
MBI03_g39326_MAGBIO Magnolia biondii HOM05D002497 ORTHO05D002697 4.6e-06 58.2 300 26.0
Aa31LG9G11990 Aethionema arabicum HOM05D002497 ORTHO05D002697 5.9e-06 57.8 156 28.8
AL1G48190 Arabidopsis lyrata HOM05D002497 ORTHO05D002697 5.9e-06 57.8 155 28.4
Haze_13931 Corylus avellana HOM05D002497 ORTHO05D002697 5.9e-06 57.8 232 27.6
Thhalv10008168m.g Eutrema salsugineum HOM05D002497 ORTHO05D002697 5.9e-06 57.8 156 28.2
FvH4_5g33090 Fragaria vesca HOM05D002497 ORTHO05D002697 5.9e-06 57.8 158 30.4
FAN04G1330 Fragaria x ananassa HOM05D002497 ORTHO05D002697 5.9e-06 57.8 158 30.4
FAN08G1727 Fragaria x ananassa HOM05D002497 ORTHO05D002697 5.9e-06 57.8 158 30.4
FAN18G4553 Fragaria x ananassa HOM05D002497 ORTHO05D002697 5.9e-06 57.8 158 30.4
Ah.05g168740 Amaranthus hybridus HOM05D002497 ORTHO05D002697 7.8e-06 57.4 153 28.8
Cpa.g.c47000 Carica papaya HOM05D002497 ORTHO05D002697 7.8e-06 57.4 154 29.2
CiPaw.04G010800 Carya illinoinensis HOM05D002497 ORTHO05D002697 7.8e-06 57.4 242 26.4
HanXRQChr02g0037051 Helianthus annuus HOM05D002497 ORTHO05D002697 7.8e-06 57.4 155 29.7
Hund17559 Selenicereus undatus HOM05D002497 ORTHO05D002697 7.8e-06 57.4 150 28.0


User provided reference genes

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