Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g28408 Brassica carinata HOM05D005682 ORTHO05D007050 2.2e-79 298.9 150 100.0
A05p29780 Brassica napus HOM05D005682 ORTHO05D007050 1.9e-54 216.1 119 89.9
C05p45010 Brassica napus HOM05D005682 ORTHO05D007050 3.2e-54 215.3 117 90.6
BolC5t33225H Brassica oleracea HOM05D005682 ORTHO05D007050 3.2e-54 215.3 117 90.6
BcaB06g26047 Brassica carinata HOM05D005682 ORTHO05D007050 7.1e-54 214.2 121 88.4
BraA05t21829Z Brassica rapa HOM05D005682 ORTHO05D007050 7.1e-54 214.2 119 89.1
BcaC05g28417 Brassica carinata HOM05D005682 ORTHO05D007050 9.2e-54 213.8 117 89.7
Sp3g17800 Schrenkiella parvula HOM05D005682 ORTHO05D007050 1.1e-46 190.3 116 80.2
BcaC05g28416 Brassica carinata HOM05D005682 ORTHO05D007050 3.6e-42 175.3 117 77.8
Thhalv10019965m.g Eutrema salsugineum HOM05D005682 ORTHO05D007050 3.6e-42 175.3 115 76.5
AT3G19780 Arabidopsis thaliana HOM05D005682 ORTHO05D007050 1.0e-36 157.1 119 68.1
AL3G33230 Arabidopsis lyrata HOM05D005682 ORTHO05D007050 1.8e-36 156.4 119 68.1
Carub.0003s1966 Capsella rubella HOM05D005682 ORTHO05D007050 1.5e-35 153.3 120 66.7
CARHR095300 Cardamine hirsuta HOM05D005682 ORTHO05D007050 3.3e-35 152.1 119 69.7
Aa31LG8G6560 Aethionema arabicum HOM05D005682 ORTHO05D007050 3.4e-24 115.5 104 57.7
Thecc.02G161600 Theobroma cacao HOM05D005682 ORTHO05D007050 5.5e-22 108.2 119 46.2
COL.COLO4_08120 Corchorus olitorius HOM05D005682 ORTHO05D007050 1.6e-21 106.7 117 46.2
Duzib132G1218 Durio zibethinus HOM05D005682 ORTHO05D007050 6.0e-21 104.8 144 39.6
Haze_11722 Corylus avellana HOM05D005682 ORTHO05D007050 3.0e-20 102.4 119 43.7
Duzib052G0545 Durio zibethinus HOM05D005682 ORTHO05D007050 3.0e-20 102.4 117 43.6
Nitab4.5_0000139g0140 Nicotiana tabacum HOM05D005682 ORTHO05D007050 3.0e-20 102.4 118 44.1
CANSAT64G0530 Cannabis sativa HOM05D005682 ORTHO05D007050 5.1e-20 101.7 116 44.0
Glyma.11G102200 Glycine max HOM05D005682 ORTHO05D007050 5.1e-20 101.7 117 46.2
Gohir.D13G062400 Gossypium hirsutum HOM05D005682 ORTHO05D007050 8.7e-20 100.9 114 43.9
Lj6A721G56 Lonicera japonica HOM05D005682 ORTHO05D007050 8.7e-20 100.9 139 41.7
Sabra07G0059100 Salix brachista HOM05D005682 ORTHO05D007050 8.7e-20 100.9 144 39.6
Sopen02g009170 Solanum pennellii HOM05D005682 ORTHO05D007050 8.7e-20 100.9 119 44.5
TPR.G32358 Trifolium pratense HOM05D005682 ORTHO05D007050 8.7e-20 100.9 118 46.6
Gohir.A13G059600 Gossypium hirsutum HOM05D005682 ORTHO05D007050 1.1e-19 100.5 117 42.7
Nitab4.5_0002392g0030 Nicotiana tabacum HOM05D005682 ORTHO05D007050 1.5e-19 100.1 115 45.2
Gorai.013G070900 Gossypium raimondii HOM05D005682 ORTHO05D007050 2.5e-19 99.4 114 43.0
CAN.G157.16 Capsicum annuum HOM05D005682 ORTHO05D007050 3.3e-19 99.0 119 43.7
Ca_03025_v3 Cicer arietinum L. HOM05D005682 ORTHO05D007050 4.3e-19 98.6 115 45.2
Phvul.011G031200 Phaseolus vulgaris HOM05D005682 ORTHO05D007050 4.3e-19 98.6 117 44.4
Sabra07G0059000 Salix brachista HOM05D005682 ORTHO05D007050 4.3e-19 98.6 144 39.6
Rhsim09G0074000 Rhododendron simsii HOM05D005682 ORTHO05D007050 7.4e-19 97.8 146 39.0
Peaxi162Scf00363g00730 Petunia axillaris HOM05D005682 ORTHO05D007050 1.3e-18 97.1 117 43.6
Potri.007G070400 Populus trichocarpa HOM05D005682 ORTHO05D007050 1.3e-18 97.1 145 38.6
QL03p043857 Quercus lobata HOM05D005682 ORTHO05D007050 1.3e-18 97.1 115 45.2
THA.LOC104826522 Tarenaya hassleriana HOM05D005682 ORTHO05D007050 1.3e-18 97.1 113 47.8
MSTRG.433 Avicennia marina HOM05D005682 ORTHO05D007050 1.6e-18 96.7 115 43.5
Nn4g24940 Nelumbo nucifera HOM05D005682 ORTHO05D007050 1.6e-18 96.7 117 43.6
FvH4_4g36771 Fragaria vesca HOM05D005682 ORTHO05D007050 2.2e-18 96.3 119 42.9
PGR044G2237 Punica granatum HOM05D005682 ORTHO05D007050 2.2e-18 96.3 117 44.4
VMungo1127G0377 Vigna mungo HOM05D005682 ORTHO05D007050 2.2e-18 96.3 117 43.6
Ciclev10030666m.g Citrus clementina HOM05D005682 ORTHO05D007050 2.8e-18 95.9 128 41.4
RcHm_v2.0_Chr4g0446491 Rosa chinensis HOM05D005682 ORTHO05D007050 3.7e-18 95.5 119 41.2
GSVIVG01010197001 Vitis vinifera HOM05D005682 ORTHO05D007050 3.7e-18 95.5 144 41.7
FAN17G1521 Fragaria x ananassa HOM05D005682 ORTHO05D007050 4.8e-18 95.1 133 39.8
HanXRQChr17g0540811 Helianthus annuus HOM05D005682 ORTHO05D007050 4.8e-18 95.1 150 36.7
vmacro10900 Vaccinium macrocarpon HOM05D005682 ORTHO05D007050 4.8e-18 95.1 144 39.6
PSO782G3049 Papaver somniferum HOM05D005682 ORTHO05D007050 6.3e-18 94.7 156 34.0
CiPaw.05G167300 Carya illinoinensis HOM05D005682 ORTHO05D007050 1.4e-17 93.6 115 40.9
FAN07G1253 Fragaria x ananassa HOM05D005682 ORTHO05D007050 1.4e-17 93.6 133 39.1
Aqoxy2G03805 Aquilegia oxysepala HOM05D005682 ORTHO05D007050 1.8e-17 93.2 114 41.2
Lj3g0015709 Lotus japonicus HOM05D005682 ORTHO05D007050 2.4e-17 92.8 116 44.0
Manes.11G108701 Manihot esculenta HOM05D005682 ORTHO05D007050 2.4e-17 92.8 115 43.5
ClCG09G004600 Citrullus lanatus HOM05D005682 ORTHO05D007050 4.1e-17 92.0 117 37.6
MD13G1007100 Malus domestica HOM05D005682 ORTHO05D007050 4.1e-17 92.0 119 42.0
Lsat_1_v5_gn_3_33580 Lactuca sativa HOM05D005682 ORTHO05D007050 5.3e-17 91.7 113 43.4
Eucgr.J00855 Eucalyptus grandis HOM05D005682 ORTHO05D007050 9.0e-17 90.9 117 44.4
TWI74G0147 Tripterygium wilfordii HOM05D005682 ORTHO05D007050 1.2e-16 90.5 116 42.2
TAR622G0093 Trochodendron aralioides HOM05D005682 ORTHO05D007050 1.2e-16 90.5 117 43.6
PSO063G1542 Papaver somniferum HOM05D005682 ORTHO05D007050 1.5e-16 90.1 150 34.7
Sc06g0007890 Simmondsia chinensis HOM05D005682 ORTHO05D007050 1.5e-16 90.1 143 39.2
MELO3C023602.2 Cucumis melo HOM05D005682 ORTHO05D007050 2.0e-16 89.7 115 38.3
Lalb_Chr01g0001491 Lupinus albus HOM05D005682 ORTHO05D007050 2.0e-16 89.7 115 40.9
SalBow2G1379 Salvia bowleyana HOM05D005682 ORTHO05D007050 2.0e-16 89.7 115 40.9
arahy.Tifrunner.gnm1.ann1.3I7IYH Arachis hypogaea HOM05D005682 ORTHO05D007050 2.6e-16 89.4 117 41.9
Migut.L00859 Erythranthe guttata HOM05D005682 ORTHO05D007050 2.6e-16 89.4 134 40.3
CsaV3_7G030540 Cucumis sativus L. HOM05D005682 ORTHO05D007050 4.5e-16 88.6 115 37.4
Cc11_g00100 Coffea canephora HOM05D005682 ORTHO05D007050 5.9e-16 88.2 119 42.0
ECA246G2025 Erigeron canadensis HOM05D005682 ORTHO05D007050 1.0e-15 87.4 114 39.5
ATR0618G435 Amborella trichopoda HOM05D005682 ORTHO05D000625 1.3e-15 87.0 113 40.7
Sed0007950 Sechium edule HOM05D005682 ORTHO05D007050 1.3e-15 87.0 113 39.8
Actinidia04079 Actinidia chinensis HOM05D005682 ORTHO05D007050 2.9e-15 85.9 119 42.0
CSS0028316 Camellia sinensis var. sinensis HOM05D005682 ORTHO05D007050 3.8e-15 85.5 121 38.0
Prupe.1G345800 Prunus persica HOM05D005682 ORTHO05D007050 3.8e-15 85.5 128 40.6
CDE04G1407 Ceratophyllum demersum HOM05D005682 ORTHO05D007050 6.5e-15 84.7 117 35.0
Medtr4g074610 Medicago truncatula HOM05D005682 ORTHO05D007050 6.5e-15 84.7 115 41.7
Dinv11710 Davidia involucrata HOM05D005682 ORTHO05D007050 1.1e-14 84.0 119 40.3
DCAR_002567 Daucus carota HOM05D005682 ORTHO05D007050 1.9e-14 83.2 99 47.5
unitig_699.g19973 Utricularia gibba HOM05D005682 ORTHO05D007050 9.3e-14 80.9 113 37.2
AUR62018178 Chenopodium quinoa HOM05D005682 ORTHO05D007050 1.6e-13 80.1 124 37.9
Oeu033538.1 Olea europaea HOM05D005682 ORTHO05D007050 2.1e-13 79.7 131 37.4
SHI13892 Sapria himalayana HOM05D005682 ORTHO05D007050 4.6e-13 78.6 105 42.9
Ah.14g085910 Amaranthus hybridus HOM05D005682 ORTHO05D007050 6.1e-13 78.2 149 34.9
Zm00001eb221340 Zea mays HOM05D005682 ORTHO05D007050 6.1e-13 78.2 117 36.8
Hma1.2p1_0499F.1_g166820 Hydrangea macrophylla HOM05D005682 ORTHO05D007050 1.0e-12 77.4 119 39.5
AUR62038663 Chenopodium quinoa HOM05D005682 ORTHO05D007050 2.3e-12 76.3 124 37.9
Hund13152 Selenicereus undatus HOM05D005682 ORTHO05D007050 6.7e-12 74.7 118 38.1
Os10g0485100 Oryza sativa ssp. japonica HOM05D005682 ORTHO05D007050 8.8e-12 74.3 101 39.6
EL10Ac9g20684 Beta vulgaris HOM05D005682 ORTHO05D007050 5.7e-11 71.6 123 34.1
HPP92_008567 Vanilla planifolia HOM05D005682 ORTHO05D007050 7.4e-11 71.2 113 38.1
SEGI_38899 Sequoiadendron giganteum HOM05D005682 ORTHO05D007050 1.4e-09 67.0 105 32.4
AagrBONN_evm.TU.Sc2ySwM_340.174 Anthoceros agrestis HOM05D005682 ORTHO05D007050 1.9e-06 56.6 120 30.8


User provided reference genes

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