Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g28402 Brassica carinata HOM05D003778 ORTHO05D004418 0.0e+00 1159.1 562 100.0
A05p29300 Brassica napus HOM05D003778 ORTHO05D004418 0.0e+00 1159.1 562 100.0
C05p44820 Brassica napus HOM05D003778 ORTHO05D004418 0.0e+00 1159.1 562 100.0
BraA05t21813Z Brassica rapa HOM05D003778 ORTHO05D004418 0.0e+00 1157.9 562 99.8
BolC5t33208H Brassica oleracea HOM05D003778 ORTHO05D004418 0.0e+00 1156.7 562 99.8
Thhalv10020412m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 0.0e+00 1139.8 562 98.0
Sp3g17830 Schrenkiella parvula HOM05D003778 ORTHO05D004418 0.0e+00 1134.4 562 97.7
BcaB06g26051 Brassica carinata HOM05D003778 ORTHO05D004418 0.0e+00 1134.0 562 97.5
A01p34930 Brassica napus HOM05D003778 ORTHO05D004418 0.0e+00 1124.4 562 96.4
C01p44340 Brassica napus HOM05D003778 ORTHO05D004418 0.0e+00 1123.2 562 96.4
BolC1t04399H Brassica oleracea HOM05D003778 ORTHO05D004418 0.0e+00 1123.2 562 96.4
BraA01t03576Z Brassica rapa HOM05D003778 ORTHO05D004418 0.0e+00 1122.5 562 96.3
Aa31LG8G6590 Aethionema arabicum HOM05D003778 ORTHO05D004418 0.0e+00 1110.9 562 95.4
AL3G33330 Arabidopsis lyrata HOM05D003778 ORTHO05D004418 0.0e+00 1110.9 562 95.2
Carub.0003s1970 Capsella rubella HOM05D003778 ORTHO05D004418 0.0e+00 1107.8 562 94.0
AT3G19820 Arabidopsis thaliana HOM05D003778 ORTHO05D004418 0.0e+00 1099.0 562 94.0
CARHR095330 Cardamine hirsuta HOM05D003778 ORTHO05D004418 0.0e+00 1093.2 562 92.9
THA.LOC104804923 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 2.5e-306 1054.7 562 89.5
A06p03260 Brassica napus HOM05D003778 ORTHO05D004418 9.7e-306 1052.7 562 88.8
Sp1g37100 Schrenkiella parvula HOM05D003778 ORTHO05D004418 1.7e-305 1052.0 562 88.6
BraA06t23537Z Brassica rapa HOM05D003778 ORTHO05D004418 2.2e-305 1051.6 562 88.6
BolC6t35641H Brassica oleracea HOM05D003778 ORTHO05D004418 7.7e-303 1043.1 562 88.1
THA.LOC104815230 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 7.0e-296 1020.0 562 85.9
arahy.Tifrunner.gnm1.ann1.J2YHHP Arachis hypogaea HOM05D003778 ORTHO05D004418 4.2e-293 1010.7 561 86.5
Sabra08G0063000 Salix brachista HOM05D003778 ORTHO05D004418 9.4e-293 1009.6 565 85.1
Potri.008G084800 Populus trichocarpa HOM05D003778 ORTHO05D004418 1.6e-292 1008.8 563 85.4
arahy.Tifrunner.gnm1.ann1.G65HTE Arachis hypogaea HOM05D003778 ORTHO05D004418 4.7e-292 1007.3 564 86.2
Glyma.11G103500 Glycine max HOM05D003778 ORTHO05D004418 6.1e-292 1006.9 564 85.8
Lj3g0022719 Lotus japonicus HOM05D003778 ORTHO05D004418 1.8e-291 1005.4 564 85.3
COL.COLO4_27669 Corchorus olitorius HOM05D003778 ORTHO05D004418 2.3e-291 1005.0 564 85.5
PGR004G0624 Punica granatum HOM05D003778 ORTHO05D004418 2.3e-291 1005.0 565 84.6
CANSAT78G1874 Cannabis sativa HOM05D003778 ORTHO05D004418 3.0e-291 1004.6 564 84.9
VMungo1127G1615 Vigna mungo HOM05D003778 ORTHO05D004418 5.2e-291 1003.8 564 85.8
Potri.010G170000 Populus trichocarpa HOM05D003778 ORTHO05D004418 2.6e-290 1001.5 563 85.1
SalBow8G3862 Salvia bowleyana HOM05D003778 ORTHO05D004418 7.4e-290 1000.0 565 84.8
SalBow2G0375 Salvia bowleyana HOM05D003778 ORTHO05D004418 2.2e-289 998.4 565 84.4
Gohir.A13G026100 Gossypium hirsutum HOM05D003778 ORTHO05D004418 4.8e-289 997.3 565 84.8
Dinv17604 Davidia involucrata HOM05D003778 ORTHO05D004418 8.2e-289 996.5 564 84.4
Gohir.D13G024700 Gossypium hirsutum HOM05D003778 ORTHO05D004418 1.1e-288 996.1 565 84.8
Sabra10G0129800 Salix brachista HOM05D003778 ORTHO05D004418 1.4e-288 995.7 563 85.1
Lalb_Chr01g0001531 Lupinus albus HOM05D003778 ORTHO05D004418 1.8e-288 995.3 564 84.8
TAR035G0003 Trochodendron aralioides HOM05D003778 ORTHO05D004418 2.4e-288 995.0 564 84.2
SGA_v2.0_scaffold223G42894 Striga asiatica HOM05D003778 ORTHO05D004418 3.1e-288 994.6 563 85.1
Gorai.013G027900 Gossypium raimondii HOM05D003778 ORTHO05D004418 4.1e-288 994.2 565 84.6
TAR629G2113 Trochodendron aralioides HOM05D003778 ORTHO05D004418 7.0e-288 993.4 564 84.0
Migut.M01947 Erythranthe guttata HOM05D003778 ORTHO05D004418 2.6e-287 991.5 562 84.3
Haze_11725 Corylus avellana HOM05D003778 ORTHO05D004418 3.5e-287 991.1 564 84.2
Lalb_Chr03g0024881 Lupinus albus HOM05D003778 ORTHO05D004418 4.5e-287 990.7 564 84.8
Phvul.011G031700 Phaseolus vulgaris HOM05D003778 ORTHO05D004418 2.2e-286 988.4 564 83.5
Eucgr.J00851 Eucalyptus grandis HOM05D003778 ORTHO05D004418 2.9e-286 988.0 564 83.3
TWI74G0502 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 2.9e-286 988.0 564 83.9
MSTRG.16322 Avicennia marina HOM05D003778 ORTHO05D004418 3.8e-286 987.6 565 84.4
Aqoxy3G04278 Aquilegia oxysepala HOM05D003778 ORTHO05D004418 5.0e-286 987.3 561 83.6
BcaC08g43211 Brassica carinata HOM05D003778 ORTHO05D004418 6.5e-286 986.9 562 84.3
PSO017G4886 Papaver somniferum HOM05D003778 ORTHO05D004418 6.5e-286 986.9 565 83.7
PSO478G4461 Papaver somniferum HOM05D003778 ORTHO05D004418 6.5e-286 986.9 565 83.7
Duzib248G0532 Durio zibethinus HOM05D003778 ORTHO05D004418 1.5e-285 985.7 565 83.5
QL03p043582 Quercus lobata HOM05D003778 ORTHO05D004418 3.2e-285 984.6 564 83.0
Atru.chr11.1231 Acer truncatum HOM05D003778 ORTHO05D004418 4.2e-285 984.2 564 82.6
Atru.chr11.1319 Acer truncatum HOM05D003778 ORTHO05D004418 4.2e-285 984.2 564 82.6
DCAR_002565 Daucus carota HOM05D003778 ORTHO05D004418 5.5e-285 983.8 564 83.5
DCAR_030405 Daucus carota HOM05D003778 ORTHO05D004418 9.4e-285 983.0 564 83.9
Psat7g174000 Pisum sativum HOM05D003778 ORTHO05D004418 9.4e-285 983.0 564 83.2
CiPaw.06G057600 Carya illinoinensis HOM05D003778 ORTHO05D004418 1.2e-284 982.6 564 83.3
Thecc.02G311500 Theobroma cacao HOM05D003778 ORTHO05D004418 1.2e-284 982.6 564 83.5
Actinidia04080 Actinidia chinensis HOM05D003778 ORTHO05D004418 1.6e-284 982.2 564 83.3
Sc06g0007850 Simmondsia chinensis HOM05D003778 ORTHO05D004418 2.7e-284 981.5 564 84.4
Lj6A722T93 Lonicera japonica HOM05D003778 ORTHO05D004418 1.4e-283 979.2 567 83.6
Medtr4g074350 Medicago truncatula HOM05D003778 ORTHO05D004418 1.8e-283 978.8 564 82.8
Rhsim09G0073500 Rhododendron simsii HOM05D003778 ORTHO05D004418 2.3e-283 978.4 564 83.5
TWI77G0069 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 8.8e-283 976.5 564 82.4
vmacro00468 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 1.2e-282 976.1 564 83.0
TPR.G21559 Trifolium pratense HOM05D003778 ORTHO05D004418 2.0e-282 975.3 564 82.1
C06p05320 Brassica napus HOM05D003778 ORTHO05D004418 2.6e-282 974.9 521 88.3
Ca_03035_v3 Cicer arietinum L. HOM05D003778 ORTHO05D004418 3.4e-282 974.5 564 83.0
Ciclev10030984m.g Citrus clementina HOM05D003778 ORTHO05D004418 4.4e-282 974.2 564 82.3
Rhsim09G0073400 Rhododendron simsii HOM05D003778 ORTHO05D004418 7.5e-282 973.4 564 83.2
HanXRQChr13g0388101 Helianthus annuus HOM05D003778 ORTHO05D004418 9.7e-282 973.0 563 82.4
SEGI_38803 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 9.7e-282 973.0 564 81.4
Cc09_g06490 Coffea canephora HOM05D003778 ORTHO05D004418 2.8e-281 971.5 562 82.4
ECA233G5967 Erigeron canadensis HOM05D003778 ORTHO05D004418 6.3e-281 970.3 563 82.4
Os10g0397400 Oryza sativa ssp. japonica HOM05D003778 ORTHO05D004418 6.3e-281 970.3 559 82.1
Manes.03G081200 Manihot esculenta HOM05D003778 ORTHO05D004418 7.0e-280 966.8 562 82.0
MBI03_g24012_MAGBIO Magnolia biondii HOM05D003778 ORTHO05D004418 9.1e-280 966.5 564 82.4
Zm00001eb228910 Zea mays HOM05D003778 ORTHO05D004418 9.1e-280 966.5 561 81.3
Nitab4.5_0000265g0030 Nicotiana tabacum HOM05D003778 ORTHO05D004418 1.2e-279 966.1 564 81.2
CSS0038233 Camellia sinensis var. sinensis HOM05D003778 ORTHO05D004418 2.7e-279 964.9 564 81.9
ClCG09G004610 Citrullus lanatus HOM05D003778 ORTHO05D004418 1.0e-278 963.0 562 81.3
ECA234G2331 Erigeron canadensis HOM05D003778 ORTHO05D004418 3.8e-278 961.1 556 82.2
Hund24279 Selenicereus undatus HOM05D003778 ORTHO05D004418 6.5e-278 960.3 551 83.3
Ah.01g001630 Amaranthus hybridus HOM05D003778 ORTHO05D004418 8.5e-278 959.9 551 82.9
Lj6g0014800 Lotus japonicus HOM05D003778 ORTHO05D004418 1.1e-277 959.5 564 81.9
CDE05G2073 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 1.5e-277 959.1 563 81.5
HanXRQChr01g0028571 Helianthus annuus HOM05D003778 ORTHO05D004418 5.5e-277 957.2 559 81.8
Prupe.1G345300 Prunus persica HOM05D003778 ORTHO05D004418 5.5e-277 957.2 564 81.2
CAN.G79.46 Capsicum annuum HOM05D003778 ORTHO05D004418 2.1e-276 955.3 564 80.1
AUR62017664 Chenopodium quinoa HOM05D003778 ORTHO05D004418 3.6e-276 954.5 550 82.5
Lsat_1_v5_gn_8_32421 Lactuca sativa HOM05D003778 ORTHO05D004418 3.6e-276 954.5 563 80.6
ATR0618G344 Amborella trichopoda HOM05D003778 ORTHO05D004418 4.7e-276 954.1 564 80.7
Lsat_1_v5_gn_4_26521 Lactuca sativa HOM05D003778 ORTHO05D004418 1.8e-275 952.2 564 80.5
Sopen02g009490 Solanum pennellii HOM05D003778 ORTHO05D004418 1.8e-275 952.2 551 81.3
Peaxi162Scf01123g00017 Petunia axillaris HOM05D003778 ORTHO05D004418 2.3e-275 951.8 563 80.1
AUR62015201 Chenopodium quinoa HOM05D003778 ORTHO05D004418 3.0e-275 951.4 550 82.2
MD13G1007700 Malus domestica HOM05D003778 ORTHO05D004418 2.6e-274 948.3 564 80.5
MD16G1000400 Malus domestica HOM05D003778 ORTHO05D004418 3.4e-274 948.0 564 80.3
MELO3C023603.2 Cucumis melo HOM05D003778 ORTHO05D004418 4.4e-274 947.6 564 79.3
PGSC0003DMG400011801 Solanum tuberosum HOM05D003778 ORTHO05D004418 4.4e-274 947.6 553 80.8
Sed0012416 Sechium edule HOM05D003778 ORTHO05D004418 7.5e-274 946.8 564 79.6
RcHm_v2.0_Chr4g0446441 Rosa chinensis HOM05D003778 ORTHO05D004418 4.1e-272 941.0 568 79.6
Lj6g0026630 Lotus japonicus HOM05D003778 ORTHO05D004418 5.4e-272 940.6 561 80.7
CsaV3_7G030530 Cucumis sativus L. HOM05D003778 ORTHO05D004418 2.0e-271 938.7 564 78.4
FAN07G1289 Fragaria x ananassa HOM05D003778 ORTHO05D004418 1.0e-270 936.4 566 79.9
FvH4_4g36730 Fragaria vesca HOM05D003778 ORTHO05D004418 1.5e-269 932.6 566 79.5
FAN12G0530 Fragaria x ananassa HOM05D003778 ORTHO05D004418 3.3e-269 931.4 566 79.3
Solyc02g030170.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 7.2e-269 930.2 534 81.8
Nitab4.5_0001219g0170 Nicotiana tabacum HOM05D003778 ORTHO05D004418 8.0e-268 926.8 564 78.0
EL10Ac9g22920 Beta vulgaris HOM05D003778 ORTHO05D004418 1.5e-266 922.5 566 79.2
Nitab4.5_0008761g0020 Nicotiana tabacum HOM05D003778 ORTHO05D004418 2.6e-266 921.8 564 78.2
Peaxi162Scf00833g00024 Petunia axillaris HOM05D003778 ORTHO05D004418 3.9e-262 907.9 552 78.1
Solyc02g069490.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 3.3e-261 904.8 559 76.2
CsaV3_4G009240 Cucumis sativus L. HOM05D003778 ORTHO05D004418 4.3e-261 904.4 564 75.4
ClCG07G016390 Citrullus lanatus HOM05D003778 ORTHO05D004418 5.6e-261 904.0 564 75.5
Sopen02g018630 Solanum pennellii HOM05D003778 ORTHO05D004418 1.6e-260 902.5 554 76.5
PGSC0003DMG400021142 Solanum tuberosum HOM05D003778 ORTHO05D004418 1.6e-260 902.5 554 76.2
Sed0007506 Sechium edule HOM05D003778 ORTHO05D004418 2.1e-260 902.1 564 75.0
SMO367G0245 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 5.8e-258 894.0 564 75.9
FAN17G2175 Fragaria x ananassa HOM05D003778 ORTHO05D004418 7.5e-258 893.6 564 78.0
CAN.G675.20 Capsicum annuum HOM05D003778 ORTHO05D004418 7.0e-256 887.1 553 76.1
CAN.G1362.14 Capsicum annuum HOM05D003778 ORTHO05D004418 4.6e-255 884.4 564 73.4
HanXRQChr15g0483641 Helianthus annuus HOM05D003778 ORTHO05D004418 8.0e-252 873.6 570 72.3
Pp3c7_650 Physcomitrium patens HOM05D003778 ORTHO05D004418 8.3e-249 863.6 564 73.6
AagrBONN_evm.TU.Sc2ySwM_117.797 Anthoceros agrestis HOM05D003778 ORTHO05D004418 4.1e-248 861.3 563 72.5
Lsat_1_v5_gn_3_32901 Lactuca sativa HOM05D003778 ORTHO05D004418 2.7e-247 858.6 561 72.5
Mapoly0190s0010 Marchantia polymorpha HOM05D003778 ORTHO05D004418 1.1e-245 853.2 564 72.7
Peaxi162Scf00695g00218 Petunia axillaris HOM05D003778 ORTHO05D004418 1.2e-239 833.2 565 71.3
Peaxi162Scf00312g00221 Petunia axillaris HOM05D003778 ORTHO05D004418 3.9e-238 828.2 565 71.2
Pp3c11_26120 Physcomitrium patens HOM05D003778 ORTHO05D004418 2.8e-236 822.0 564 71.3
unitig_748.g7356 Utricularia gibba HOM05D003778 ORTHO05D004418 4.7e-236 821.2 558 74.9
MELO3C022613.2 Cucumis melo HOM05D003778 ORTHO05D004418 6.4e-225 784.3 468 77.8
Glyma.12G028300 Glycine max HOM05D003778 ORTHO05D004418 2.7e-215 752.3 419 86.6
AUR62018172 Chenopodium quinoa HOM05D003778 ORTHO05D004418 2.8e-204 715.7 425 80.0
GSVIVG01010184001 Vitis vinifera HOM05D003778 ORTHO05D004418 5.0e-201 704.9 562 64.6
Oeu008711.1 Olea europaea HOM05D003778 ORTHO05D004418 5.9e-194 681.4 561 62.0
AUR62014967 Chenopodium quinoa HOM05D003778 ORTHO05D004418 4.4e-181 638.6 373 79.6
Mapoly0153s0024 Marchantia polymorpha HOM05D003778 ORTHO05D004418 8.2e-172 607.8 553 53.9
vmacro10903 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 6.1e-159 565.1 418 69.1
SEGI_20352 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 8.0e-159 564.7 519 50.3
AagrBONN_evm.TU.Sc2ySwM_344.4140 Anthoceros agrestis HOM05D003778 ORTHO05D004418 1.8e-158 563.5 486 53.5
CDE05G2099 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 2.3e-158 563.1 330 80.0
Nn4g24924 Nelumbo nucifera HOM05D003778 ORTHO05D004418 9.1e-155 551.2 298 84.2
SMO347G0448 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 7.8e-138 495.0 418 56.2
Zm00001eb190720 Zea mays HOM05D003778 ORTHO05D004418 4.1e-131 472.6 316 71.5
Nitab4.5_0012697g0010 Nicotiana tabacum HOM05D003778 ORTHO05D004418 3.0e-129 466.5 561 47.8
Nitab4.5_0000876g0110 Nicotiana tabacum HOM05D003778 ORTHO05D004418 5.6e-128 462.2 561 47.6
CDE05G1908 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 9.9e-125 451.4 466 54.9
C06p05360 Brassica napus HOM05D003778 ORTHO05D004418 2.1e-98 364.0 546 41.9
Thhalv10012112m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 1.5e-93 347.8 214 80.4
CBR_g45591 Chara braunii HOM05D003778 ORTHO05D004418 3.2e-83 313.5 490 36.5
BcaC08g43207 Brassica carinata HOM05D003778 ORTHO05D004418 1.5e-72 278.1 198 69.2
BolC6t35639H Brassica oleracea HOM05D003778 ORTHO05D004418 1.3e-71 275.0 198 68.7
BcaB04g19062 Brassica carinata HOM05D003778 ORTHO05D004418 1.1e-70 271.9 166 78.9
C03p50700 Brassica napus HOM05D003778 ORTHO05D004418 2.1e-50 204.5 166 68.7
C03p50680 Brassica napus HOM05D003778 ORTHO05D004418 8.0e-50 202.6 166 68.7
BolC3t17357H Brassica oleracea HOM05D003778 ORTHO05D004418 1.4e-49 201.8 166 68.7
BolC3t17355H Brassica oleracea HOM05D003778 ORTHO05D004418 1.5e-48 198.4 166 68.1
vmacro10902 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 5.7e-48 196.4 118 81.4
GSVIVG01028580001 Vitis vinifera HOM05D003778 ORTHO05D004418 7.7e-45 186.0 128 73.4
GSVIVG01002973001 Vitis vinifera HOM05D003778 ORTHO05D004418 8.5e-44 182.6 128 71.9
Zm00001eb190730 Zea mays HOM05D003778 ORTHO05D004418 5.2e-41 173.3 116 67.2
Cfa024211 Carpinus fangiana HOM05D003778 ORTHO05D004418 1.2e-37 162.2 375 31.2
A03p41410 Brassica napus HOM05D003778 ORTHO05D004418 8.6e-36 156.0 210 46.2
Cfa023151 Carpinus fangiana HOM05D003778 ORTHO05D004418 6.8e-33 146.4 492 25.8
BcaC01g03602 Brassica carinata HOM05D003778 ORTHO05D004418 7.0e-30 136.3 181 48.6
Gorai.005G150900 Gossypium raimondii HOM05D003778 ORTHO05D004418 3.3e-27 127.5 87 67.8
PGSC0003DMG400004305 Solanum tuberosum HOM05D003778 ORTHO05D004418 3.3e-27 127.5 89 67.4
HanXRQChr08g0230901 Helianthus annuus HOM05D003778 ORTHO05D004418 8.0e-26 122.9 76 71.1
GSVIVG01033182001 Vitis vinifera HOM05D003778 ORTHO05D008307 1.5e-24 118.6 67 76.1
A03p41420 Brassica napus HOM05D003778 ORTHO05D004418 1.7e-23 115.2 166 45.8
C06p05290 Brassica napus HOM05D003778 ORTHO05D033430 1.3e-20 105.5 103 51.5
BraA03t13295Z Brassica rapa HOM05D003778 ORTHO05D004418 2.2e-15 88.2 46 82.6
C03p50690 Brassica napus HOM05D003778 ORTHO05D004418 6.8e-09 66.6 32 96.9
BolC3t17356H Brassica oleracea HOM05D003778 ORTHO05D004418 6.8e-09 66.6 32 96.9
C03p50670 Brassica napus HOM05D003778 ORTHO05D004418 2.6e-08 64.7 32 93.8
Duzib187G1275 Durio zibethinus HOM05D000597 ORTHO05D006307 6.4e-07 60.1 140 26.4
Atru.chr7.1606 Acer truncatum HOM05D000597 ORTHO05D000603 1.4e-06 58.9 141 30.5
Cc08_g01180 Coffea canephora HOM05D000597 ORTHO05D006307 1.4e-06 58.9 164 26.2


User provided reference genes

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