Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g28375 Brassica carinata HOM05D004203 ORTHO05D004830 1.6e-249 865.5 421 100.0
BolC5t33177H Brassica oleracea HOM05D004203 ORTHO05D004830 1.6e-249 865.5 421 100.0
A05p29130 Brassica napus HOM05D004203 ORTHO05D004830 5.5e-237 823.9 418 95.0
BraA05t21796Z Brassica rapa HOM05D004203 ORTHO05D004830 7.2e-237 823.5 418 95.2
BcaB06g26068 Brassica carinata HOM05D004203 ORTHO05D004830 2.5e-234 815.1 421 93.6
AT3G19990 Arabidopsis thaliana HOM05D004203 ORTHO05D004830 2.0e-223 778.9 426 88.0
C05p44530 Brassica napus HOM05D004203 ORTHO05D004830 2.0e-223 778.9 421 91.2
CARHR095520 Cardamine hirsuta HOM05D004203 ORTHO05D004830 3.4e-223 778.1 426 89.2
Thhalv10020793m.g Eutrema salsugineum HOM05D004203 ORTHO05D004830 4.5e-223 777.7 426 88.3
Sp3g18010 Schrenkiella parvula HOM05D004203 ORTHO05D004830 1.0e-222 776.5 426 88.5
AL3G33640 Arabidopsis lyrata HOM05D004203 ORTHO05D004830 2.2e-222 775.4 426 87.6
BolC1t04373H Brassica oleracea HOM05D004203 ORTHO05D004830 2.5e-221 771.9 417 89.4
C01p44100 Brassica napus HOM05D004203 ORTHO05D004830 5.5e-221 770.8 417 89.2
BcaC09g48955 Brassica carinata HOM05D004203 ORTHO05D004830 1.2e-220 769.6 417 89.0
Carub.0003s1989 Capsella rubella HOM05D004203 ORTHO05D004830 3.6e-220 768.1 427 87.1
BcaB04g20673 Brassica carinata HOM05D004203 ORTHO05D004830 1.0e-219 766.5 417 89.0
BraA01t03555Z Brassica rapa HOM05D004203 ORTHO05D004830 1.0e-219 766.5 417 88.2
A01p34680 Brassica napus HOM05D004203 ORTHO05D004830 1.7e-217 759.2 417 87.3
Aa31LG8G6770 Aethionema arabicum HOM05D004203 ORTHO05D004830 8.5e-214 746.9 424 84.0
THA.LOC104826512 Tarenaya hassleriana HOM05D004203 ORTHO05D004830 2.0e-194 682.6 414 78.7
Duzib248G1608 Durio zibethinus HOM05D004203 ORTHO05D004830 4.1e-184 648.3 416 74.8
Thecc.02G153000 Theobroma cacao HOM05D004203 ORTHO05D004830 5.4e-184 647.9 416 74.8
Cpa.g.sc257.7 Carica papaya HOM05D004203 ORTHO05D004830 3.5e-183 645.2 414 73.4
Potri.007G001200 Populus trichocarpa HOM05D004203 ORTHO05D004830 1.7e-182 642.9 414 75.1
Sabra07G0000900 Salix brachista HOM05D004203 ORTHO05D004830 3.9e-182 641.7 413 75.1
Gorai.013G067000 Gossypium raimondii HOM05D004203 ORTHO05D004830 5.0e-182 641.3 414 73.7
Gohir.D13G059200 Gossypium hirsutum HOM05D004203 ORTHO05D004830 1.1e-181 640.2 414 73.7
Atru.chr11.55 Acer truncatum HOM05D004203 ORTHO05D004830 1.9e-181 639.4 412 73.8
Ciclev10015311m.g Citrus clementina HOM05D004203 ORTHO05D004830 1.9e-181 639.4 413 73.1
CiPaw.15G000900 Carya illinoinensis HOM05D004203 ORTHO05D004830 9.5e-181 637.1 414 73.4
COL.COLO4_33135 Corchorus olitorius HOM05D004203 ORTHO05D004830 9.5e-181 637.1 416 72.8
Gohir.A13G062700 Gossypium hirsutum HOM05D004203 ORTHO05D004830 1.2e-180 636.7 414 72.9
Peaxi162Scf00603g00031 Petunia axillaris HOM05D004203 ORTHO05D004830 2.8e-180 635.6 415 74.0
QL01p000433 Quercus lobata HOM05D004203 ORTHO05D004830 2.8e-180 635.6 414 74.4
TWI74G0727 Tripterygium wilfordii HOM05D004203 ORTHO05D004830 4.7e-180 634.8 414 72.7
DCAR_026874 Daucus carota HOM05D004203 ORTHO05D004830 3.1e-179 632.1 414 71.7
TAR623G0552 Trochodendron aralioides HOM05D004203 ORTHO05D004830 8.9e-179 630.6 414 72.7
Actinidia13679 Actinidia chinensis HOM05D004203 ORTHO05D004830 1.5e-178 629.8 418 72.5
Oeu027932.1 Olea europaea HOM05D004203 ORTHO05D004830 2.6e-178 629.0 414 70.5
Hma1.2p1_0513F.1_g169570 Hydrangea macrophylla HOM05D004203 ORTHO05D004830 7.5e-178 627.5 415 70.6
Aqoxy3G04325 Aquilegia oxysepala HOM05D004203 ORTHO05D004830 1.7e-177 626.3 418 70.1
Duzib132G1212 Durio zibethinus HOM05D004203 ORTHO05D004830 6.4e-177 624.4 414 71.3
Haze_17403 Corylus avellana HOM05D004203 ORTHO05D004830 3.2e-176 622.1 414 72.5
Atru.chr11.58 Acer truncatum HOM05D004203 ORTHO05D004830 7.0e-176 620.9 404 73.3
Cfa018675 Carpinus fangiana HOM05D004203 ORTHO05D004830 1.2e-175 620.2 423 71.9
AUR62032903 Chenopodium quinoa HOM05D004203 ORTHO05D004830 2.0e-175 619.4 414 71.0
ClCG01G007960 Citrullus lanatus HOM05D004203 ORTHO05D004830 6.0e-175 617.8 414 69.6
Manes.04G161600 Manihot esculenta HOM05D004203 ORTHO05D004830 6.0e-175 617.8 414 70.3
CANSAT78G1232 Cannabis sativa HOM05D004203 ORTHO05D004830 3.0e-174 615.5 415 71.3
PGSC0003DMG400000979 Solanum tuberosum HOM05D004203 ORTHO05D004830 3.0e-174 615.5 415 71.6
CSS0042488 Camellia sinensis var. sinensis HOM05D004203 ORTHO05D004830 1.9e-173 612.8 414 70.8
MD13G1001600 Malus domestica HOM05D004203 ORTHO05D004830 3.3e-173 612.1 434 68.0
VMungo0900G0001 Vigna mungo HOM05D004203 ORTHO05D004830 3.3e-173 612.1 414 71.3
Eucgr.L03404 Eucalyptus grandis HOM05D004203 ORTHO05D004830 4.3e-173 611.7 419 69.5
EL10Ac9g23011 Beta vulgaris HOM05D004203 ORTHO05D004830 5.6e-173 611.3 412 70.4
Eucgr.G02598 Eucalyptus grandis HOM05D004203 ORTHO05D004830 5.6e-173 611.3 419 69.5
Dinv37943 Davidia involucrata HOM05D004203 ORTHO05D004830 9.5e-173 610.5 416 72.6
Eucgr.G02607 Eucalyptus grandis HOM05D004203 ORTHO05D004830 9.5e-173 610.5 417 69.1
PGR142G4147 Punica granatum HOM05D004203 ORTHO05D004830 1.6e-172 609.8 421 70.8
CAN.G143.62 Capsicum annuum HOM05D004203 ORTHO05D004830 2.1e-172 609.4 415 70.6
Sopen11g002260 Solanum pennellii HOM05D004203 ORTHO05D004830 2.8e-172 609.0 415 70.8
MBI06_g12559_MAGBIO Magnolia biondii HOM05D004203 ORTHO05D004830 4.7e-172 608.2 414 71.3
PSO063G7450 Papaver somniferum HOM05D004203 ORTHO05D004830 1.1e-171 607.1 414 69.3
Nitab4.5_0001803g0070 Nicotiana tabacum HOM05D004203 ORTHO05D004830 1.4e-171 606.7 413 70.7
Phvul.003G000800 Phaseolus vulgaris HOM05D004203 ORTHO05D004830 3.1e-171 605.5 421 69.1
PSO782G5227 Papaver somniferum HOM05D004203 ORTHO05D004830 4.0e-171 605.1 414 69.1
AUR62017749 Chenopodium quinoa HOM05D004203 ORTHO05D004830 8.9e-171 604.0 410 69.3
CsaV3_5G021930 Cucumis sativus L. HOM05D004203 ORTHO05D004830 1.5e-170 603.2 415 68.4
Nitab4.5_0001018g0120 Nicotiana tabacum HOM05D004203 ORTHO05D004830 2.0e-170 602.8 413 70.7
CDE04G2894 Ceratophyllum demersum HOM05D004203 ORTHO05D004830 5.8e-170 601.3 414 67.6
MELO3C005084.2 Cucumis melo HOM05D004203 ORTHO05D004830 5.8e-170 601.3 415 67.7
Cc11_g04600 Coffea canephora HOM05D004203 ORTHO05D004830 9.9e-170 600.5 414 68.4
Lalb_Chr17g0337651 Lupinus albus HOM05D004203 ORTHO05D004830 9.9e-170 600.5 414 70.3
Glyma.09G285700 Glycine max HOM05D004203 ORTHO05D004830 1.7e-169 599.7 419 69.9
Rhsim02G0210900 Rhododendron simsii HOM05D004203 ORTHO05D004830 7.1e-168 594.3 421 69.1
Prupe.1G350900 Prunus persica HOM05D004203 ORTHO05D004830 4.6e-167 591.7 439 66.3
Psat6g100840 Pisum sativum HOM05D004203 ORTHO05D004830 6.0e-167 591.3 419 68.3
Hund24393 Selenicereus undatus HOM05D004203 ORTHO05D004830 7.8e-167 590.9 418 69.1
Cc11_g04630 Coffea canephora HOM05D004203 ORTHO05D004830 2.3e-166 589.3 414 66.7
Medtr0365s0010 Medicago truncatula HOM05D004203 ORTHO05D004830 3.0e-166 589.0 416 68.3
Lsat_1_v5_gn_3_35621 Lactuca sativa HOM05D004203 ORTHO05D004830 2.8e-164 582.4 416 68.3
Lj2g0024262 Lotus japonicus HOM05D004203 ORTHO05D004830 1.1e-163 580.5 418 68.7
ClCG01G007980 Citrullus lanatus HOM05D004203 ORTHO05D004830 4.4e-162 575.1 407 65.8
FvH4_4g37300 Fragaria vesca HOM05D004203 ORTHO05D004830 4.4e-162 575.1 414 67.1
Sed0024681 Sechium edule HOM05D004203 ORTHO05D004830 5.8e-162 574.7 414 65.2
Ca_12360_v3 Cicer arietinum L. HOM05D004203 ORTHO05D004830 1.3e-161 573.5 414 68.1
Ca_12363_v3 Cicer arietinum L. HOM05D004203 ORTHO05D004830 1.3e-161 573.5 414 68.1
Gohir.D13G059100 Gossypium hirsutum HOM05D004203 ORTHO05D004830 4.1e-160 568.5 414 64.3
Gorai.013G066900 Gossypium raimondii HOM05D004203 ORTHO05D004830 4.1e-160 568.5 414 64.3
RcHm_v2.0_Chr4g0447121 Rosa chinensis HOM05D004203 ORTHO05D004830 5.4e-160 568.2 414 65.5
FAN17G0196 Fragaria x ananassa HOM05D004203 ORTHO05D004830 9.2e-160 567.4 414 66.4
Eucgr.G02596 Eucalyptus grandis HOM05D004203 ORTHO05D004830 2.1e-159 566.2 417 65.5
Migut.O00611 Erythranthe guttata HOM05D004203 ORTHO05D004830 2.7e-159 565.8 415 66.7
HanXRQChr15g0472171 Helianthus annuus HOM05D004203 ORTHO05D004830 6.0e-159 564.7 419 66.3
Migut.L00789 Erythranthe guttata HOM05D004203 ORTHO05D004830 1.7e-158 563.1 418 66.3
MSTRG.8095 Avicennia marina HOM05D004203 ORTHO05D004830 8.6e-158 560.8 416 67.3
SalBow2G2162 Salvia bowleyana HOM05D004203 ORTHO05D004830 9.6e-157 557.4 415 65.8
ECA246G1911 Erigeron canadensis HOM05D004203 ORTHO05D004830 1.2e-156 557.0 419 67.3
SHI10741 Sapria himalayana HOM05D004203 ORTHO05D004830 4.7e-156 555.1 397 66.5
Eucgr.G02594 Eucalyptus grandis HOM05D004203 ORTHO05D004830 6.2e-156 554.7 419 63.2
ECA246G0515 Erigeron canadensis HOM05D004203 ORTHO05D004830 5.2e-155 551.6 417 65.5
Lsat_1_v5_gn_4_27720 Lactuca sativa HOM05D004203 ORTHO05D004830 6.9e-155 551.2 416 63.0
unitig_749.g13343 Utricularia gibba HOM05D004203 ORTHO05D004830 2.4e-152 542.7 414 65.5
ECA234G3608 Erigeron canadensis HOM05D004203 ORTHO05D004830 4.2e-152 542.0 412 60.7
QL01p000454 Quercus lobata HOM05D004203 ORTHO05D004830 3.3e-149 532.3 414 65.2
Eucgr.G02595 Eucalyptus grandis HOM05D004203 ORTHO05D004830 1.3e-148 530.4 420 61.7
Lsat_1_v5_gn_8_139521 Lactuca sativa HOM05D004203 ORTHO05D004830 5.8e-146 521.5 414 59.7
HPP92_022176 Vanilla planifolia HOM05D004203 ORTHO05D004830 5.8e-146 521.5 411 61.1
QL01p000540 Quercus lobata HOM05D004203 ORTHO05D004830 9.3e-144 514.2 358 71.2
ATR0124G027 Amborella trichopoda HOM05D004203 ORTHO05D004830 1.3e-142 510.4 414 59.9
HPP92_005409 Vanilla planifolia HOM05D004203 ORTHO05D004830 1.8e-142 510.0 418 61.2
HanXRQChr17g0559591 Helianthus annuus HOM05D004203 ORTHO05D004830 3.0e-142 509.2 414 56.3
Os02g0828200 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 1.1e-141 507.3 413 58.4
HanXRQChr09g0251301 Helianthus annuus HOM05D004203 ORTHO05D004830 4.8e-140 501.9 414 55.3
Zm00001eb259360 Zea mays HOM05D004203 ORTHO05D004830 8.1e-140 501.1 413 58.1
ECA233G1072 Erigeron canadensis HOM05D004203 ORTHO05D004830 9.3e-136 487.6 395 57.7
SEGI_02027 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 1.9e-133 479.9 447 52.1
Os02g0828500 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 3.3e-133 479.2 416 55.8
MD16G1004500 Malus domestica HOM05D004203 ORTHO05D004830 1.6e-124 450.3 406 57.6
TPR.G34239 Trifolium pratense HOM05D004203 ORTHO05D004830 3.0e-118 429.5 310 69.0
AagrBONN_evm.TU.Sc2ySwM_368.1197 Anthoceros agrestis HOM05D004203 ORTHO05D004830 1.5e-117 427.2 436 50.0
Thecc.02G152900 Theobroma cacao HOM05D004203 ORTHO05D004830 6.9e-115 418.3 298 67.1
Sc08g0004160 Simmondsia chinensis HOM05D004203 ORTHO05D004830 2.7e-111 406.4 255 73.7
SMO117G0084 Selaginella moellendorffii HOM05D004203 ORTHO05D004830 2.2e-108 396.7 413 48.4
Pp3c17_21640 Physcomitrium patens HOM05D004203 ORTHO05D004830 2.0e-106 390.2 420 45.0
Mapoly0080s0012 Marchantia polymorpha HOM05D004203 ORTHO05D004830 1.0e-105 387.9 415 46.0
GSVIVG01034366001 Vitis vinifera HOM05D004203 ORTHO05D004830 1.1e-104 384.4 414 50.2
GSVIVG01034368001 Vitis vinifera HOM05D004203 ORTHO05D004830 2.5e-104 383.3 414 50.7
SEGI_01054 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 1.5e-101 374.0 350 50.6
Cre16.g671500 Chlamydomonas reinhardtii HOM05D004203 ORTHO05D004830 7.2e-88 328.6 414 41.8
Lj3A845T90 Lonicera japonica HOM05D004203 ORTHO05D004830 8.8e-86 321.6 244 66.0
Prupe.1G351100 Prunus persica HOM05D004203 ORTHO05D004830 2.4e-83 313.5 239 64.9
Medtr0400s0020 Medicago truncatula HOM05D004203 ORTHO05D004830 1.6e-82 310.8 227 67.0
SEGI_32381 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 2.3e-78 297.0 296 48.3
BcaB08g37041 Brassica carinata HOM05D004203 ORTHO05D004830 1.6e-58 231.1 146 78.8
BcaB06g27490 Brassica carinata HOM05D004203 ORTHO05D004830 2.5e-56 223.8 158 74.7
Lj3C845T9 Lonicera japonica HOM05D004203 ORTHO05D004830 1.4e-54 218.0 158 68.4
Atru.chr11.60 Acer truncatum HOM05D004203 ORTHO05D004830 1.2e-53 214.9 161 65.2
Sc08g0004150 Simmondsia chinensis HOM05D004203 ORTHO05D004830 3.6e-47 193.4 139 61.9
SEGI_16211 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 8.1e-47 192.2 314 35.7
Sc08g0004170 Simmondsia chinensis HOM05D004203 ORTHO05D004830 6.4e-44 182.6 132 59.8
BcaB06g27488 Brassica carinata HOM05D004203 ORTHO05D004830 3.6e-39 166.8 100 83.0
Solyc11g006360.1 Solanum lycopersicum HOM05D004203 ORTHO05D004830 4.7e-39 166.4 114 66.7
SEGI_00877 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 1.3e-36 158.3 213 45.1
FAN12G3670 Fragaria x ananassa HOM05D004203 ORTHO05D004830 1.4e-35 154.8 160 53.1
BcaB06g27492 Brassica carinata HOM05D004203 ORTHO05D004830 4.6e-34 149.8 92 82.6
Atru.chr11.61 Acer truncatum HOM05D004203 ORTHO05D004830 6.6e-33 146.0 129 63.6
BcaC07g39871 Brassica carinata HOM05D004203 ORTHO05D004830 4.8e-31 139.8 79 84.8
BcaB06g26576 Brassica carinata HOM05D004203 ORTHO05D004830 2.6e-29 134.0 78 80.8
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 2.9e-28 130.6 408 25.2
BcaB08g37040 Brassica carinata HOM05D004203 ORTHO05D004830 3.3e-24 117.1 67 82.1
Sc08g0004180 Simmondsia chinensis HOM05D004203 ORTHO05D004830 4.0e-22 110.2 67 74.6
BcaB06g27494 Brassica carinata HOM05D004203 ORTHO05D004830 1.9e-19 101.3 62 80.6
BcaB06g27495 Brassica carinata HOM05D004203 ORTHO05D004830 6.0e-18 96.3 60 73.3
Os03g0251425 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 7.9e-18 95.9 95 50.5
Sc08g0004140 Simmondsia chinensis HOM05D004203 ORTHO05D004830 1.5e-16 91.7 84 51.2
BcaC07g38231 Brassica carinata HOM05D004203 ORTHO05D004830 1.6e-15 88.2 58 81.0
BcaB06g26577 Brassica carinata HOM05D004203 ORTHO05D004830 8.2e-15 85.9 55 81.8
SEGI_08354 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 6.9e-14 82.8 68 51.5
GSVIVG01034364001 Vitis vinifera HOM05D004203 ORTHO05D004830 3.8e-12 77.0 73 53.4
A05p19690 Brassica napus HOM05D004203 ORTHO05D004830 1.9e-11 74.7 51 76.5
BcaB05g24942 Brassica carinata HOM05D004203 ORTHO05D004830 3.0e-09 67.4 45 71.1
C06p51380 Brassica napus HOM05D004203 ORTHO05D004830 3.0e-09 67.4 43 81.4
MCO08G255 Micromonas commoda HOM05D004203 ORTHO05D004830 2.5e-08 64.3 106 34.9
COL.COLO4_33125 Corchorus olitorius HOM05D004203 ORTHO05D004830 3.3e-08 63.9 39 66.7
Pp3c14_4390 Physcomitrium patens HOM05D004203 ORTHO05D004830 6.3e-07 59.7 72 37.5
Cpa.g.c45316 Carica papaya HOM05D004203 ORTHO05D004830 4.1e-06 57.0 44 65.9


User provided reference genes

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