Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g28363 Brassica carinata HOM05D001447 ORTHO05D005923 1.5e-142 509.6 272 100.0
C05p44410 Brassica napus HOM05D001447 ORTHO05D005923 2.7e-136 488.8 278 95.7
BolC5t33164H Brassica oleracea HOM05D001447 ORTHO05D005923 2.7e-136 488.8 278 95.7
BraA05t21783Z Brassica rapa HOM05D001447 ORTHO05D005923 3.8e-130 468.4 278 92.4
A05p29010 Brassica napus HOM05D001447 ORTHO05D005923 2.5e-126 455.7 301 85.7
Sp3g18100 Schrenkiella parvula HOM05D001447 ORTHO05D005923 1.3e-90 337.0 281 70.1
CARHR095600 Cardamine hirsuta HOM05D001447 ORTHO05D005923 1.4e-84 317.0 281 66.2
BcaB06g26078 Brassica carinata HOM05D001447 ORTHO05D005923 2.0e-83 313.2 303 63.4
AL3G33750 Arabidopsis lyrata HOM05D001447 ORTHO05D005923 2.9e-82 309.3 288 63.9
Thhalv10021184m.g Eutrema salsugineum HOM05D001447 ORTHO05D005923 2.5e-81 306.2 310 61.9
Aa31LG8G6860 Aethionema arabicum HOM05D001447 ORTHO05D005923 8.8e-79 297.7 276 63.0
Carub.0003s1999 Capsella rubella HOM05D001447 ORTHO05D005923 3.4e-78 295.8 280 62.5
AT3G20070 Arabidopsis thaliana HOM05D001447 ORTHO05D005923 5.7e-62 241.9 281 54.8
THA.LOC104811411 Tarenaya hassleriana HOM05D001447 ORTHO05D005923 9.2e-60 234.6 278 54.3
THA.LOC104809267 Tarenaya hassleriana HOM05D001447 ORTHO05D005923 3.4e-54 216.1 297 48.8
BolC4t26880H Brassica oleracea HOM05D001447 ORTHO05D005923 1.3e-50 204.1 228 60.1
Gorai.006G125800 Gossypium raimondii HOM05D001447 ORTHO05D005923 8.6e-50 201.4 302 42.4
Gohir.D09G108100 Gossypium hirsutum HOM05D001447 ORTHO05D005923 1.1e-49 201.1 302 42.4
Gohir.A09G111500 Gossypium hirsutum HOM05D001447 ORTHO05D005923 1.2e-48 197.6 302 41.4
Thecc.09G241000 Theobroma cacao HOM05D001447 ORTHO05D005923 4.7e-48 195.7 303 42.9
CiPaw.13G153600 Carya illinoinensis HOM05D001447 ORTHO05D005923 2.3e-47 193.4 296 43.6
TWI14G1124 Tripterygium wilfordii HOM05D001447 ORTHO05D005923 3.1e-47 193.0 328 41.8
Cfa009826 Carpinus fangiana HOM05D001447 ORTHO05D008204 4.0e-47 192.6 299 45.2
GSVIVG01031554001 Vitis vinifera HOM05D001447 ORTHO05D005923 5.2e-47 192.2 311 44.1
BcaB06g26464 Brassica carinata HOM05D001447 ORTHO05D005923 2.0e-46 190.3 154 70.8
CANSAT54G2333 Cannabis sativa HOM05D001447 ORTHO05D005923 2.0e-46 190.3 313 41.2
TWI23G0345 Tripterygium wilfordii HOM05D001447 ORTHO05D005923 5.8e-46 188.7 323 41.2
Cpa.g.sc84.6 Carica papaya HOM05D001447 ORTHO05D005923 2.9e-45 186.4 299 41.1
Gohir.D05G073400 Gossypium hirsutum HOM05D001447 ORTHO05D005923 2.9e-45 186.4 272 43.8
Manes.09G003800 Manihot esculenta HOM05D001447 ORTHO05D005923 4.9e-45 185.7 307 43.0
Dinv36208 Davidia involucrata HOM05D001447 ORTHO05D005923 2.4e-44 183.3 305 41.0
Manes.06G161200 Manihot esculenta HOM05D001447 ORTHO05D005923 4.1e-44 182.6 306 41.5
Prupe.4G257000 Prunus persica HOM05D001447 ORTHO05D005923 1.6e-43 180.6 310 40.3
CAN.G625.44 Capsicum annuum HOM05D001447 ORTHO05D005923 2.1e-43 180.3 293 39.6
Gorai.009G074300 Gossypium raimondii HOM05D001447 ORTHO05D005923 3.5e-43 179.5 304 40.8
Sopen02g030930 Solanum pennellii HOM05D001447 ORTHO05D005923 6.0e-43 178.7 293 41.6
RcHm_v2.0_Chr5g0051191 Rosa chinensis HOM05D001447 ORTHO05D005923 7.8e-43 178.3 311 38.9
Medtr7g075050 Medicago truncatula HOM05D001447 ORTHO05D005923 3.9e-42 176.0 290 43.1
ClCG02G023020 Citrullus lanatus HOM05D001447 ORTHO05D008204 5.1e-42 175.6 302 39.1
Haze_23187 Corylus avellana HOM05D001447 ORTHO05D005923 5.1e-42 175.6 292 43.2
Nn2g15058 Nelumbo nucifera HOM05D001447 ORTHO05D005923 1.1e-41 174.5 307 40.4
Solyc02g086250.4 Solanum lycopersicum HOM05D001447 ORTHO05D005923 1.1e-41 174.5 295 40.7
BcaB02g07197 Brassica carinata HOM05D001447 ORTHO05D005923 1.5e-41 174.1 119 76.5
BcaB01g01441 Brassica carinata HOM05D001447 ORTHO05D005923 5.6e-41 172.2 204 55.9
Glyma.18G222500 Glycine max HOM05D001447 ORTHO05D005923 5.6e-41 172.2 295 40.0
Medtr8g059560 Medicago truncatula HOM05D001447 ORTHO05D005923 5.6e-41 172.2 290 42.4
MD11G1187600 Malus domestica HOM05D001447 ORTHO05D005923 7.3e-41 171.8 291 39.5
Duzib168G0657 Durio zibethinus HOM05D001447 ORTHO05D005923 2.1e-40 170.2 281 42.0
LjContig00136g0008106 Lotus japonicus HOM05D001447 ORTHO05D005923 2.1e-40 170.2 296 39.5
CSS0020855 Camellia sinensis var. sinensis HOM05D001447 ORTHO05D005923 3.6e-40 169.5 312 39.7
Oeu038401.1 Olea europaea HOM05D001447 ORTHO05D005923 4.7e-40 169.1 299 39.5
TPR.G26927 Trifolium pratense HOM05D001447 ORTHO05D005923 4.7e-40 169.1 292 40.8
Glyma.10G069400 Glycine max HOM05D001447 ORTHO05D005923 6.2e-40 168.7 295 41.0
CsaV3_6G039120 Cucumis sativus L. HOM05D001447 ORTHO05D008204 1.1e-39 167.9 297 40.7
FvH4_3g28310 Fragaria vesca HOM05D001447 ORTHO05D005923 1.1e-39 167.9 311 37.9
FAN11G3154 Fragaria x ananassa HOM05D001447 ORTHO05D005923 1.1e-39 167.9 311 37.9
TAR369G0010 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.4e-39 167.5 314 38.2
MELO3C014572.2 Cucumis melo HOM05D001447 ORTHO05D005923 1.8e-39 167.2 304 40.5
FAN16G0976 Fragaria x ananassa HOM05D001447 ORTHO05D005923 3.1e-39 166.4 311 37.9
Glyma.09G267400 Glycine max HOM05D001447 ORTHO05D005923 5.2e-39 165.6 308 37.7
Glyma.13G152406 Glycine max HOM05D001447 ORTHO05D005923 8.9e-39 164.9 300 40.0
AUR62000166 Chenopodium quinoa HOM05D001447 ORTHO05D005923 1.2e-38 164.5 301 39.9
MD03G1170100 Malus domestica HOM05D001447 ORTHO05D005923 1.2e-38 164.5 289 39.4
Potri.009G049500 Populus trichocarpa HOM05D001447 ORTHO05D005923 1.2e-38 164.5 307 38.1
COL.COLO4_36479 Corchorus olitorius HOM05D001447 ORTHO05D005923 1.5e-38 164.1 265 40.4
Gohir.A05G070400 Gossypium hirsutum HOM05D001447 ORTHO05D005923 1.5e-38 164.1 304 40.5
Eucgr.J00732 Eucalyptus grandis HOM05D001447 ORTHO05D005923 3.4e-38 162.9 314 39.2
Actinidia06934 Actinidia chinensis HOM05D001447 ORTHO05D008204 5.8e-38 162.2 308 39.3
Lalb_Chr17g0336631 Lupinus albus HOM05D001447 ORTHO05D005923 1.3e-37 161.0 327 36.7
VMungo1383G2912 Vigna mungo HOM05D001447 ORTHO05D005923 1.7e-37 160.6 283 39.6
Nitab4.5_0003652g0030 Nicotiana tabacum HOM05D001447 ORTHO05D005923 2.2e-37 160.2 302 38.4
Hund21995 Selenicereus undatus HOM05D001447 ORTHO05D005923 2.9e-37 159.8 325 36.9
MSTRG.11555 Avicennia marina HOM05D001447 ORTHO05D005923 3.8e-37 159.5 298 38.6
TAR623G1061 Trochodendron aralioides HOM05D001447 ORTHO05D005923 4.9e-37 159.1 296 39.5
Phvul.008G074800 Phaseolus vulgaris HOM05D001447 ORTHO05D005923 1.4e-36 157.5 281 38.8
PGR119G0225 Punica granatum HOM05D001447 ORTHO05D005923 1.9e-36 157.1 298 36.9
Migut.O00259 Erythranthe guttata HOM05D001447 ORTHO05D005923 3.2e-36 156.4 279 38.7
Hma1.2p1_1503F.1_g287490 Hydrangea macrophylla HOM05D001447 ORTHO05D005923 4.1e-36 156.0 289 38.4
FAN21G0933 Fragaria x ananassa HOM05D001447 ORTHO05D005923 7.1e-36 155.2 317 36.6
arahy.Tifrunner.gnm1.ann1.Q3UL2U Arachis hypogaea HOM05D001447 ORTHO05D005923 9.2e-36 154.8 305 37.4
Cc01_g06480 Coffea canephora HOM05D001447 ORTHO05D005923 1.6e-35 154.1 309 37.9
arahy.Tifrunner.gnm1.ann1.QJKL08 Arachis hypogaea HOM05D001447 ORTHO05D005923 2.1e-35 153.7 305 37.4
AUR62039845 Chenopodium quinoa HOM05D001447 ORTHO05D005923 2.7e-35 153.3 312 38.8
PSO170G2976 Papaver somniferum HOM05D001447 ORTHO05D005923 3.5e-35 152.9 288 38.9
Sc09g0000900 Simmondsia chinensis HOM05D001447 ORTHO05D005923 3.5e-35 152.9 289 36.0
ECA233G1682 Erigeron canadensis HOM05D001447 ORTHO05D005923 4.6e-35 152.5 301 40.5
FAN25G1867 Fragaria x ananassa HOM05D001447 ORTHO05D005923 7.8e-35 151.8 311 36.7
Psat3g114240 Pisum sativum HOM05D001447 ORTHO05D005923 8.6e-34 148.3 287 39.7
Peaxi162Scf00394g00910 Petunia axillaris HOM05D001447 ORTHO05D005923 1.5e-33 147.5 265 38.5
PSO384G1304 Papaver somniferum HOM05D001447 ORTHO05D005923 2.5e-33 146.7 294 36.7
Lalb_Chr20g0108071 Lupinus albus HOM05D001447 ORTHO05D005923 4.3e-33 146.0 330 34.8
PSO339G5991 Papaver somniferum HOM05D001447 ORTHO05D005923 5.6e-33 145.6 294 37.1
MBI13_g04766_MAGBIO Magnolia biondii HOM05D001447 ORTHO05D005923 9.6e-33 144.8 310 35.8
PGSC0003DMG400026385 Solanum tuberosum HOM05D001447 ORTHO05D005923 1.2e-32 144.4 274 38.3
Nitab4.5_0000753g0110 Nicotiana tabacum HOM05D001447 ORTHO05D005923 2.1e-32 143.7 290 35.2
Lsat_1_v5_gn_2_28360 Lactuca sativa HOM05D001447 ORTHO05D005923 8.1e-32 141.7 290 36.6
Ah.06g193790 Amaranthus hybridus HOM05D001447 ORTHO05D005923 1.4e-31 141.0 300 37.0
Thhalv10023995m.g Eutrema salsugineum HOM05D001447 ORTHO05D005923 2.4e-31 140.2 232 45.3
HanXRQChr14g0441711 Helianthus annuus HOM05D001447 ORTHO05D005923 3.1e-31 139.8 273 38.8
VMungo0540G1247 Vigna mungo HOM05D001447 ORTHO05D003921 6.9e-31 138.7 307 34.9
Atru.chr3.2630 Acer truncatum HOM05D001447 ORTHO05D005923 1.5e-30 137.5 348 33.3
Aqoxy2G00276 Aquilegia oxysepala HOM05D001447 ORTHO05D005923 3.4e-30 136.3 305 34.1
ECA234G3051 Erigeron canadensis HOM05D001447 ORTHO05D005923 2.2e-29 133.7 286 39.2
Hma1.2p1_1116F.1_g258880 Hydrangea macrophylla HOM05D001447 ORTHO05D005923 4.2e-28 129.4 275 35.6
EL10Ac4g10184 Beta vulgaris HOM05D001447 ORTHO05D005923 9.3e-28 128.3 279 36.9
Actinidia16355 Actinidia chinensis HOM05D001447 ORTHO05D005923 2.1e-27 127.1 372 31.5
PSO210G7517 Papaver somniferum HOM05D001447 ORTHO05D005923 2.7e-27 126.7 274 37.2
SalBow4G0828 Salvia bowleyana HOM05D001447 ORTHO05D005923 3.5e-27 126.3 354 32.2
vmacro10456 Vaccinium macrocarpon HOM05D001447 ORTHO05D005923 1.0e-26 124.8 335 33.7
Ciclev10006845m.g Citrus clementina HOM05D001447 ORTHO05D005923 2.3e-26 123.6 290 36.6
Sed0027916 Sechium edule HOM05D001447 ORTHO05D005923 5.1e-26 122.5 295 32.5
Aqoxy2G00275 Aquilegia oxysepala HOM05D001447 ORTHO05D005923 1.5e-25 120.9 303 33.7
TAR623G0977 Trochodendron aralioides HOM05D001447 ORTHO05D005923 2.8e-24 116.7 139 51.8
HPP92_015725 Vanilla planifolia HOM05D001447 ORTHO05D005923 4.8e-24 115.9 275 34.9
Rhsim13G0217200 Rhododendron simsii HOM05D001447 ORTHO05D005923 9.0e-23 111.7 340 33.2
TAR623G1057 Trochodendron aralioides HOM05D001447 ORTHO05D005923 2.6e-22 110.2 225 39.1
BcaC01g05497 Brassica carinata HOM05D001447 ORTHO05D005923 1.3e-21 107.8 118 57.6
BcaC03g16136 Brassica carinata HOM05D015278 ORTHO05D032781 1.7e-21 107.5 246 41.1
QL01p018064 Quercus lobata HOM05D001447 ORTHO05D005923 1.7e-21 107.5 207 42.5
ATR0681G241 Amborella trichopoda HOM05D001447 ORTHO05D005923 1.4e-20 104.4 321 32.1
BcaC02g08532 Brassica carinata HOM05D001447 ORTHO05D005923 1.4e-20 104.4 118 56.8
Aa31LG7G13510 Aethionema arabicum HOM05D001447 ORTHO05D005923 7.1e-20 102.1 143 46.9
DCAR_002089 Daucus carota HOM05D001447 ORTHO05D005923 1.2e-19 101.3 124 48.4
BcaC03g18319 Brassica carinata HOM05D001447 ORTHO05D005923 6.0e-19 99.0 107 57.9
unitig_8.g3773 Utricularia gibba HOM05D001447 ORTHO05D005923 3.9e-18 96.3 108 53.7
Lj5A793G14 Lonicera japonica HOM05D001447 ORTHO05D005923 3.3e-17 93.2 119 47.1
vmacro04118 Vaccinium macrocarpon HOM05D001447 ORTHO05D005923 5.6e-17 92.4 404 28.5
Lj2A623T26 Lonicera japonica HOM05D001447 ORTHO05D005923 6.2e-16 89.0 173 38.7
CDE02G0596 Ceratophyllum demersum HOM05D001447 ORTHO05D005923 1.1e-15 88.2 105 49.5
HanXRQChr04g0117031 Helianthus annuus HOM05D001447 ORTHO05D005923 3.1e-15 86.7 217 35.5
SGA_v2.0_scaffold25G10748 Striga asiatica HOM05D001447 ORTHO05D005923 1.2e-14 84.7 212 33.0
BcaC04g19960 Brassica carinata HOM05D001447 ORTHO05D005923 1.5e-14 84.3 101 54.5
SHI27451 Sapria himalayana HOM05D001447 ORTHO05D000654 2.6e-14 83.6 147 37.4
TAR622G0649 Trochodendron aralioides HOM05D000050 ORTHO05D000654 5.8e-14 82.4 265 26.8
AL6G53120 Arabidopsis lyrata HOM05D001447 ORTHO05D005923 2.2e-13 80.5 59 74.6
Ca_07826_v3 Cicer arietinum L. HOM05D001447 ORTHO05D005923 4.2e-12 76.3 225 33.3
QL01p018054 Quercus lobata HOM05D001447 ORTHO05D005923 1.2e-11 74.7 70 54.3
SEGI_16617 Sequoiadendron giganteum HOM05D001447 ORTHO05D005923 1.2e-11 74.7 342 25.1
SEGI_06958 Sequoiadendron giganteum HOM05D001447 ORTHO05D005923 2.1e-11 73.9 344 25.6
TAR623G0319 Trochodendron aralioides HOM05D001447 ORTHO05D005923 4.6e-11 72.8 165 35.2
Os06g0245600 Oryza sativa ssp. japonica HOM05D001447 ORTHO05D005923 7.9e-11 72.0 239 28.0
TAR623G0653 Trochodendron aralioides HOM05D001447 ORTHO05D005923 6.7e-10 68.9 55 67.3
Zm00001eb128570 Zea mays HOM05D001447 ORTHO05D005923 2.5e-09 67.0 316 26.3
C09p74960 Brassica napus HOM05D015278 ORTHO05D005923 8.1e-08 62.0 56 69.6
TAR623G1702 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.8e-07 60.8 109 39.4
C01p41070 Brassica napus HOM05D015278 ORTHO05D005923 4.0e-07 59.7 56 67.9
C04p53240 Brassica napus HOM05D015278 ORTHO05D005923 5.3e-07 59.3 56 67.9
C04p53330 Brassica napus HOM05D015278 ORTHO05D005923 5.3e-07 59.3 56 67.9
C02p39380 Brassica napus HOM05D015278 ORTHO05D032781 2.6e-06 57.0 64 64.1
BolC2t09948H Brassica oleracea HOM05D015278 ORTHO05D032781 2.6e-06 57.0 64 64.1
C02p22810 Brassica napus HOM05D015278 ORTHO05D005923 4.5e-06 56.2 56 66.1
C07p45330 Brassica napus HOM05D015278 ORTHO05D005923 4.5e-06 56.2 56 66.1


User provided reference genes

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