Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g28281 Brassica carinata HOM05D006024 ORTHO05D007505 2.4e-198 695.3 350 100.0
BcaB06g26149 Brassica carinata HOM05D006024 ORTHO05D007505 9.0e-193 676.8 350 96.9
A05p27990 Brassica napus HOM05D006024 ORTHO05D007505 5.8e-192 674.1 356 96.1
BolC5t33061H Brassica oleracea HOM05D006024 ORTHO05D007505 7.9e-189 663.7 356 95.5
C05p43290 Brassica napus HOM05D006024 ORTHO05D007505 1.0e-188 663.3 356 95.5
BraA05t21682Z Brassica rapa HOM05D006024 ORTHO05D007505 8.2e-186 653.7 356 94.1
Sp3g18810 Schrenkiella parvula HOM05D006024 ORTHO05D007505 5.8e-184 647.5 356 91.9
AT3G20790 Arabidopsis thaliana HOM05D006024 ORTHO05D007505 6.7e-180 634.0 356 88.5
Thhalv10021019m.g Eutrema salsugineum HOM05D006024 ORTHO05D007505 1.3e-178 629.8 357 89.9
AL3G34710 Arabidopsis lyrata HOM05D006024 ORTHO05D007505 8.2e-178 627.1 356 88.8
CARHR096620 Cardamine hirsuta HOM05D006024 ORTHO05D007505 1.0e-175 620.2 357 88.5
Carub.0003s2075 Capsella rubella HOM05D006024 ORTHO05D007505 6.1e-173 610.9 357 86.6
THA.LOC104816910 Tarenaya hassleriana HOM05D006024 ORTHO05D007505 3.9e-164 581.6 358 82.4
Cpa.g.sc84.110 Carica papaya HOM05D006024 ORTHO05D007505 4.7e-149 531.6 362 74.6
Aa31LG8G7600 Aethionema arabicum HOM05D006024 ORTHO05D007505 2.6e-147 525.8 357 77.9
CANSAT54G0336 Cannabis sativa HOM05D006024 ORTHO05D007505 2.4e-145 519.2 361 72.0
Ciclev10015756m.g Citrus clementina HOM05D006024 ORTHO05D007505 2.4e-145 519.2 354 73.7
FAN11G3540 Fragaria x ananassa HOM05D006024 ORTHO05D007505 2.4e-145 519.2 353 73.1
CSS0019947 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 4.1e-145 518.5 350 74.3
CSS0045029 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 4.1e-145 518.5 350 74.3
COL.COLO4_09894 Corchorus olitorius HOM05D006024 ORTHO05D007505 5.3e-145 518.1 352 71.9
CiPaw.13G165500 Carya illinoinensis HOM05D006024 ORTHO05D007505 7.0e-145 517.7 354 72.9
FvH4_3g43551 Fragaria vesca HOM05D006024 ORTHO05D007505 7.0e-145 517.7 356 72.2
MD11G1022800 Malus domestica HOM05D006024 ORTHO05D007505 2.7e-144 515.8 356 72.2
Prupe.6G018500 Prunus persica HOM05D006024 ORTHO05D007505 2.7e-144 515.8 355 71.3
Manes.14G014400 Manihot esculenta HOM05D006024 ORTHO05D007505 7.7e-144 514.2 363 72.2
Thecc.09G223300 Theobroma cacao HOM05D006024 ORTHO05D007505 1.7e-143 513.1 358 71.8
Eucgr.J00813 Eucalyptus grandis HOM05D006024 ORTHO05D007505 2.9e-143 512.3 354 71.8
Potri.003G210900 Populus trichocarpa HOM05D006024 ORTHO05D007505 3.8e-143 511.9 361 72.6
RcHm_v2.0_Chr5g0078111 Rosa chinensis HOM05D006024 ORTHO05D007505 3.8e-143 511.9 356 71.6
Potri.T085501 Populus trichocarpa HOM05D006024 ORTHO05D007505 5.0e-143 511.5 362 72.4
TWI60G1552 Tripterygium wilfordii HOM05D006024 ORTHO05D007505 1.9e-142 509.6 356 72.2
Oeu042179.3 Olea europaea HOM05D006024 ORTHO05D007505 9.4e-142 507.3 356 70.8
Gohir.D06G112300 Gossypium hirsutum HOM05D006024 ORTHO05D007505 3.6e-141 505.4 356 70.8
Gorai.010G128200 Gossypium raimondii HOM05D006024 ORTHO05D007505 3.6e-141 505.4 356 70.8
Cc01_g04140 Coffea canephora HOM05D006024 ORTHO05D007505 6.1e-141 504.6 356 71.3
Hma1.2p1_2304F.1_g319350 Hydrangea macrophylla HOM05D006024 ORTHO05D007505 1.4e-140 503.4 356 71.3
Lsat_1_v5_gn_6_50101 Lactuca sativa HOM05D006024 ORTHO05D007505 2.3e-140 502.7 351 71.2
PGR119G1295 Punica granatum HOM05D006024 ORTHO05D007505 3.0e-140 502.3 354 71.2
Atru.chr3.2505 Acer truncatum HOM05D006024 ORTHO05D007505 6.8e-140 501.1 364 69.8
GSVIVG01025335001 Vitis vinifera HOM05D006024 ORTHO05D007505 6.8e-140 501.1 358 70.7
CsaV3_4G023790 Cucumis sativus L. HOM05D006024 ORTHO05D007505 2.2e-138 496.1 352 70.2
Duzib168G0763 Durio zibethinus HOM05D006024 ORTHO05D007505 3.7e-138 495.4 352 69.9
Cfa009695 Carpinus fangiana HOM05D006024 ORTHO05D007505 4.8e-138 495.0 354 69.5
arahy.Tifrunner.gnm1.ann1.7L1RE9 Arachis hypogaea HOM05D006024 ORTHO05D007505 6.3e-138 494.6 354 70.1
MELO3C014640.2 Cucumis melo HOM05D006024 ORTHO05D007505 6.3e-138 494.6 353 69.7
Sed0023125 Sechium edule HOM05D006024 ORTHO05D007505 1.4e-137 493.4 353 70.0
Nitab4.5_0003796g0050 Nicotiana tabacum HOM05D006024 ORTHO05D007505 1.8e-137 493.0 356 69.1
HanXRQChr02g0056471 Helianthus annuus HOM05D006024 ORTHO05D007505 2.4e-137 492.7 359 69.6
Aqoxy1G00184 Aquilegia oxysepala HOM05D006024 ORTHO05D007505 1.2e-136 490.3 357 69.2
Lj4g0026168 Lotus japonicus HOM05D006024 ORTHO05D007505 2.7e-136 489.2 356 69.4
Sopen01g002620 Solanum pennellii HOM05D006024 ORTHO05D007505 2.7e-136 489.2 356 67.4
Lj3g0007180 Lotus japonicus HOM05D006024 ORTHO05D007505 1.0e-135 487.3 356 69.4
Solyc01g006630.3 Solanum lycopersicum HOM05D006024 ORTHO05D007505 1.3e-135 486.9 356 66.6
Peaxi162Scf00559g00415 Petunia axillaris HOM05D006024 ORTHO05D007505 2.3e-135 486.1 356 68.8
Ca_01271_v3 Cicer arietinum L. HOM05D006024 ORTHO05D007505 3.8e-135 485.3 356 69.4
TPR.G18832 Trifolium pratense HOM05D006024 ORTHO05D007505 3.8e-135 485.3 364 69.0
PSO339G6331 Papaver somniferum HOM05D006024 ORTHO05D007505 1.9e-134 483.0 357 68.3
Glyma.13G342800 Glycine max HOM05D006024 ORTHO05D007505 2.5e-134 482.6 362 68.2
Lalb_Chr24g0396941 Lupinus albus HOM05D006024 ORTHO05D007505 5.5e-134 481.5 355 69.3
Phvul.005G150400 Phaseolus vulgaris HOM05D006024 ORTHO05D007505 7.2e-134 481.1 356 69.4
MSTRG.21409 Avicennia marina HOM05D006024 ORTHO05D007505 1.2e-133 480.3 356 68.5
VMungo1080G1755 Vigna mungo HOM05D004763 ORTHO05D007492 1.6e-133 479.9 356 69.4
DCAR_002037 Daucus carota HOM05D006024 ORTHO05D007505 6.1e-133 478.0 358 67.6
Nn7g36060 Nelumbo nucifera HOM05D006024 ORTHO05D007505 8.0e-133 477.6 353 66.9
FAN11G0987 Fragaria x ananassa HOM05D006024 ORTHO05D007505 1.4e-132 476.9 353 68.8
Hund22080 Selenicereus undatus HOM05D006024 ORTHO05D007505 1.2e-131 473.8 344 69.2
QL01p006224 Quercus lobata HOM05D006024 ORTHO05D007505 5.7e-131 471.5 385 63.4
AUR62000078 Chenopodium quinoa HOM05D006024 ORTHO05D007505 9.8e-131 470.7 344 68.0
AUR62019251 Chenopodium quinoa HOM05D006024 ORTHO05D007505 2.2e-130 469.5 344 67.7
Medtr2g098500 Medicago truncatula HOM05D006024 ORTHO05D007505 4.9e-130 468.4 357 67.8
Gohir.A06G108500 Gossypium hirsutum HOM05D006024 ORTHO05D007505 3.5e-128 462.2 350 67.4
MSTRG.12483 Avicennia marina HOM05D006024 ORTHO05D007505 4.3e-126 455.3 356 63.8
EL10Ac4g10317 Beta vulgaris HOM05D006024 ORTHO05D007505 7.3e-126 454.5 358 64.8
CAN.G388.68 Capsicum annuum HOM05D006024 ORTHO05D007505 1.2e-125 453.8 390 60.3
Os09g0280300 Oryza sativa ssp. japonica HOM05D006024 ORTHO05D007505 8.9e-124 447.6 360 62.2
arahy.Tifrunner.gnm1.ann1.3AB71G Arachis hypogaea HOM05D006024 ORTHO05D007505 2.2e-122 443.0 345 66.4
Dinv36303 Davidia involucrata HOM05D006024 ORTHO05D007505 3.7e-122 442.2 309 70.9
ATR0605G294 Amborella trichopoda HOM05D006024 ORTHO05D007505 2.0e-120 436.4 356 61.5
Lju1319A3G40 Lonicera japonica HOM05D006024 ORTHO05D007505 7.3e-118 427.9 365 61.9
Migut.D00559 Erythranthe guttata HOM05D006024 ORTHO05D007505 1.2e-117 427.2 362 62.7
Migut.N02293 Erythranthe guttata HOM05D006024 ORTHO05D007505 3.6e-117 425.6 358 59.8
Lj1A365G18 Lonicera japonica HOM05D006024 ORTHO05D007505 4.7e-117 425.2 369 61.0
vmacro04169 Vaccinium macrocarpon HOM05D006024 ORTHO05D007505 1.4e-116 423.7 479 51.4
MBI04_g27131_MAGBIO Magnolia biondii HOM05D006024 ORTHO05D007505 2.0e-115 419.9 350 61.7
VMungo0251G0909 Vigna mungo HOM05D006024 ORTHO05D007505 3.9e-111 405.6 356 58.4
VMungo1080G1390 Vigna mungo HOM05D006024 ORTHO05D007505 3.9e-111 405.6 356 57.9
SEGI_39854 Sequoiadendron giganteum HOM05D006024 ORTHO05D007505 6.2e-109 398.3 352 57.7
SGA_v2.0_scaffold1G00800 Striga asiatica HOM05D006024 ORTHO05D007505 4.1e-105 385.6 357 58.3
unitig_8.g3081 Utricularia gibba HOM05D006024 ORTHO05D007505 3.9e-103 379.0 361 56.8
Pp3c6_24290 Physcomitrium patens HOM05D006024 ORTHO05D007505 3.2e-97 359.4 350 51.1
Sc06g0004470 Simmondsia chinensis HOM05D006024 ORTHO05D007505 1.9e-94 350.1 255 68.2
ECA233G0904 Erigeron canadensis HOM05D006024 ORTHO05D007505 7.3e-94 348.2 254 69.3
TAR636G0774 Trochodendron aralioides HOM05D006024 ORTHO05D007505 1.4e-92 344.0 250 66.8
Rhsim13G0225400 Rhododendron simsii HOM05D006024 ORTHO05D007505 4.9e-90 335.5 255 67.1
Pp3c16_13070 Physcomitrium patens HOM05D006024 ORTHO05D007505 6.4e-90 335.1 374 47.1
Haze_23046 Corylus avellana HOM05D006024 ORTHO05D007505 2.4e-89 333.2 286 60.1
Mapoly0150s0011 Marchantia polymorpha HOM05D006024 ORTHO05D007505 4.2e-89 332.4 355 47.0
Nitab4.5_0008137g0040 Nicotiana tabacum HOM05D006024 ORTHO05D007505 1.5e-86 323.9 350 51.1
AagrBONN_evm.TU.Sc2ySwM_344.3372 Anthoceros agrestis HOM05D006024 ORTHO05D007505 2.5e-86 323.2 358 46.1
SMO116G0160 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 1.3e-85 320.9 356 46.9
SMO146G0097 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 1.5e-78 297.4 337 45.4
SMO144G0113 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 1.8e-76 290.4 347 44.7
ClCG02G023630 Citrullus lanatus HOM05D006024 ORTHO05D007505 6.9e-76 288.5 197 71.6
Zm00001eb094580 Zea mays HOM05D006024 ORTHO05D007505 6.7e-71 271.9 201 65.2
AagrBONN_evm.TU.Sc2ySwM_344.254 Anthoceros agrestis HOM05D006024 ORTHO05D007505 2.0e-67 260.4 353 39.9
Pp3c3_20310 Physcomitrium patens HOM05D006024 ORTHO05D007505 8.4e-66 255.0 352 40.3
Mapoly0033s0066 Marchantia polymorpha HOM05D006024 ORTHO05D007505 1.6e-61 240.7 352 38.9
FAN16G2307 Fragaria x ananassa HOM05D006024 ORTHO05D007505 2.5e-57 226.9 140 78.6
TAR636G1381 Trochodendron aralioides HOM05D006024 ORTHO05D007505 6.5e-42 175.6 177 56.5
HPP92_000457 Vanilla planifolia HOM05D006024 ORTHO05D007505 5.2e-39 166.0 148 58.8
C01p43430 Brassica napus HOM05D006024 ORTHO05D007505 6.3e-37 159.1 149 61.1
BolC1t04302H Brassica oleracea HOM05D006024 ORTHO05D007505 6.3e-37 159.1 149 61.1
Cre01.g023300 Chlamydomonas reinhardtii HOM05D006024 ORTHO05D007505 1.5e-33 147.9 404 29.2
ECA233G1997 Erigeron canadensis HOM05D006024 ORTHO05D007505 1.9e-33 147.5 106 68.9
Psat7g086040 Pisum sativum HOM05D006024 ORTHO05D007505 1.9e-33 147.5 216 41.2
Sc06g0004480 Simmondsia chinensis HOM05D006024 ORTHO05D007505 2.5e-33 147.1 98 71.4
Psat6g204000 Pisum sativum HOM05D006024 ORTHO05D007505 4.7e-32 142.9 147 56.5
Rhsim13G0225300 Rhododendron simsii HOM05D006024 ORTHO05D007505 8.8e-31 138.7 90 75.6
Cfa023900 Carpinus fangiana HOM05D006024 ORTHO05D007505 1.3e-29 134.8 357 30.3
Psat5g288680 Pisum sativum HOM05D006024 ORTHO05D007505 1.1e-28 131.7 100 65.0
BcaC09g49021 Brassica carinata HOM05D006024 ORTHO05D007505 2.9e-26 123.6 76 86.8
FAN25G0441 Fragaria x ananassa HOM05D006024 ORTHO05D007505 2.1e-24 117.5 128 49.2
Glyma.15G031500 Glycine max HOM05D006024 ORTHO05D007505 2.1e-24 117.5 127 52.8
CSS0049558 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 3.4e-22 110.2 85 69.4
CSS0042824 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 9.8e-22 108.6 85 68.2
Actinidia16298 Actinidia chinensis HOM05D006024 ORTHO05D007505 1.7e-21 107.8 75 68.0
Medtr8g016390 Medicago truncatula HOM05D006024 ORTHO05D007505 9.1e-20 102.1 96 54.2
CSS0043067 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 4.2e-17 93.2 94 58.5
Psat5g288640 Pisum sativum HOM05D006024 ORTHO05D007505 1.2e-14 85.1 130 40.0
Oeu037561.1 Olea europaea HOM05D006024 ORTHO05D007505 1.8e-12 77.8 49 71.4


User provided reference genes

Program Settings