Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g28213 Brassica carinata HOM05D004268 ORTHO05D004958 5.3e-48 194.1 105 100.0
C05p43040 Brassica napus HOM05D004268 ORTHO05D004958 5.3e-48 194.1 105 100.0
BolC5t33035H Brassica oleracea HOM05D004268 ORTHO05D004958 5.3e-48 194.1 105 100.0
BraA05t21659Z Brassica rapa HOM05D004268 ORTHO05D004958 1.9e-45 185.7 105 95.2
BcaB06g26173 Brassica carinata HOM05D004268 ORTHO05D004958 3.2e-45 184.9 105 94.3
A05p27660 Brassica napus HOM05D004268 ORTHO05D004958 4.2e-45 184.5 105 95.2
AL3G35000 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 1.5e-42 176.0 105 92.4
Thhalv10021813m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 4.3e-42 174.5 107 88.8
AT3G21055 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 5.7e-42 174.1 105 90.5
C03p51410 Brassica napus HOM05D004268 ORTHO05D004958 3.7e-41 171.4 107 87.9
BraA03t13354Z Brassica rapa HOM05D004268 ORTHO05D004958 1.8e-40 169.1 107 86.0
CARHR096900 Cardamine hirsuta HOM05D004268 ORTHO05D004958 1.8e-40 169.1 105 89.5
Carub.0003s2095 Capsella rubella HOM05D004268 ORTHO05D004958 1.5e-39 166.0 107 84.1
BcaC01g03530 Brassica carinata HOM05D004268 ORTHO05D004958 2.9e-38 161.8 107 83.2
BolC3t17427H Brassica oleracea HOM05D004268 ORTHO05D004958 2.9e-38 161.8 107 83.2
C01p43220 Brassica napus HOM05D004268 ORTHO05D004958 7.0e-32 140.6 107 74.8
BcaC09g49044 Brassica carinata HOM05D004268 ORTHO05D004958 7.7e-31 137.1 105 74.3
BcaC08g43309 Brassica carinata HOM05D004268 ORTHO05D004958 1.0e-30 136.7 106 72.6
C06p06560 Brassica napus HOM05D004268 ORTHO05D004958 1.0e-30 136.7 106 72.6
BolC6t35768H Brassica oleracea HOM05D004268 ORTHO05D004958 1.0e-30 136.7 106 72.6
Thhalv10011883m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 2.9e-30 135.2 106 71.7
AL1G59250 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 3.8e-30 134.8 106 71.7
CARHR041550 Cardamine hirsuta HOM05D004268 ORTHO05D004958 8.5e-30 133.7 106 69.8
A06p02510 Brassica napus HOM05D004268 ORTHO05D004958 2.5e-29 132.1 106 70.8
Aa31LG10G3570 Aethionema arabicum HOM05D004268 ORTHO05D004958 3.2e-29 131.7 112 69.6
AT1G51400 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 5.5e-29 131.0 106 70.8
BraA01t03491Z Brassica rapa HOM05D004268 ORTHO05D004958 2.1e-28 129.0 107 71.0
A01p33800 Brassica napus HOM05D004268 ORTHO05D004958 1.0e-27 126.7 107 70.1
BolC1t04268H Brassica oleracea HOM05D004268 ORTHO05D004958 1.8e-27 125.9 107 69.2
Sp1g38070 Schrenkiella parvula HOM05D004268 ORTHO05D004958 5.2e-27 124.4 106 67.9
Aa31LG8G7770 Aethionema arabicum HOM05D004268 ORTHO05D004958 2.6e-26 122.1 111 66.7
Sp3g19010 Schrenkiella parvula HOM05D004268 ORTHO05D004958 5.7e-26 120.9 107 67.3
BcaB04g20616 Brassica carinata HOM05D004268 ORTHO05D004958 2.7e-23 112.1 107 64.5
Cpa.g.sc84.45 Carica papaya HOM05D004268 ORTHO05D004958 5.0e-22 107.8 106 60.4
A03p42000 Brassica napus HOM05D004268 ORTHO05D004958 2.7e-20 102.1 107 58.9
BcaB04g19135 Brassica carinata HOM05D004268 ORTHO05D004958 3.0e-19 98.6 107 57.9
Lsat_1_v5_gn_6_25460 Lactuca sativa HOM05D004268 ORTHO05D004958 8.8e-19 97.1 111 55.9
THA.LOC104816876 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 3.4e-18 95.1 113 54.9
FAN25G2913 Fragaria x ananassa HOM05D004268 ORTHO05D004958 4.4e-18 94.7 106 58.5
HanXRQChr02g0052031 Helianthus annuus HOM05D004268 ORTHO05D004958 5.7e-18 94.4 109 54.1
THA.LOC104817911 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 7.5e-18 94.0 107 55.1
RcHm_v2.0_Chr5g0052351 Rosa chinensis HOM05D004268 ORTHO05D004958 9.8e-18 93.6 106 57.5
Potri.001G256900 Populus trichocarpa HOM05D004268 ORTHO05D004958 2.2e-17 92.4 105 54.3
Ca_14452_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 3.7e-17 91.7 107 56.1
Ca_14453_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 3.7e-17 91.7 107 56.1
Gohir.A09G113900 Gossypium hirsutum HOM05D004268 ORTHO05D004958 4.8e-17 91.3 109 54.1
Gohir.D09G110500 Gossypium hirsutum HOM05D004268 ORTHO05D004958 4.8e-17 91.3 109 54.1
CiPaw.14G118100 Carya illinoinensis HOM05D004268 ORTHO05D004958 6.3e-17 90.9 109 56.9
Cc06_g23280 Coffea canephora HOM05D004268 ORTHO05D004958 6.3e-17 90.9 106 53.8
AUR62000132 Chenopodium quinoa HOM05D004268 ORTHO05D004958 1.1e-16 90.1 107 57.9
AUR62019312 Chenopodium quinoa HOM05D004268 ORTHO05D004958 1.1e-16 90.1 107 58.9
Psat5g208760 Pisum sativum HOM05D004268 ORTHO05D004958 1.1e-16 90.1 105 52.4
Sed0025860 Sechium edule HOM05D004268 ORTHO05D004958 1.4e-16 89.7 111 54.1
Manes.06G163500 Manihot esculenta HOM05D004268 ORTHO05D004958 3.1e-16 88.6 107 53.3
Duzib150G0004 Durio zibethinus HOM05D004268 ORTHO05D004958 4.1e-16 88.2 107 51.4
Medtr3g030850 Medicago truncatula HOM05D004268 ORTHO05D004958 5.4e-16 87.8 106 54.7
TPR.G35302 Trifolium pratense HOM05D004268 ORTHO05D004958 5.4e-16 87.8 105 54.3
Medtr3g030860 Medicago truncatula HOM05D004268 ORTHO05D004958 7.0e-16 87.4 107 51.4
Rhsim01G0192200 Rhododendron simsii HOM05D004268 ORTHO05D004958 9.1e-16 87.0 105 56.2
SGA_v2.0_scaffold3G01494 Striga asiatica HOM05D004268 ORTHO05D004958 9.1e-16 87.0 105 55.2
EL10Ac4g10238 Beta vulgaris HOM05D004268 ORTHO05D004958 1.6e-15 86.3 102 52.0
Actinidia23976 Actinidia chinensis HOM05D004268 ORTHO05D004958 3.5e-15 85.1 111 55.0
MELO3C014587.2 Cucumis melo HOM05D004268 ORTHO05D004958 3.5e-15 85.1 107 54.2
Peaxi162Scf00032g00063 Petunia axillaris HOM05D004268 ORTHO05D004958 3.5e-15 85.1 107 51.4
Sed0017781 Sechium edule HOM05D004268 ORTHO05D004958 4.5e-15 84.7 107 52.3
CiPaw.13G159300 Carya illinoinensis HOM05D004268 ORTHO05D004958 5.9e-15 84.3 110 55.5
Hma1.2p1_0368F.1_g137310 Hydrangea macrophylla HOM05D004268 ORTHO05D004958 5.9e-15 84.3 117 52.1
Nn2g15305 Nelumbo nucifera HOM05D004268 ORTHO05D004958 5.9e-15 84.3 105 53.3
TPR.G35305 Trifolium pratense HOM05D004268 ORTHO05D004958 5.9e-15 84.3 107 51.4
Atru.chr3.2699 Acer truncatum HOM05D004268 ORTHO05D004958 7.7e-15 84.0 114 50.9
Ciclev10017247m.g Citrus clementina HOM05D004268 ORTHO05D004958 1.0e-14 83.6 110 50.0
Peaxi162Scf00004g00263 Petunia axillaris HOM05D004268 ORTHO05D004958 1.0e-14 83.6 109 50.5
Haze_23147 Corylus avellana HOM05D004268 ORTHO05D004958 1.7e-14 82.8 110 54.5
Duzib168G1465 Durio zibethinus HOM05D004268 ORTHO05D004958 1.7e-14 82.8 107 49.5
Glyma.15G275600 Glycine max HOM05D004268 ORTHO05D004958 1.7e-14 82.8 105 50.5
ClCG02G023150 Citrullus lanatus HOM05D004268 ORTHO05D004958 2.9e-14 82.0 107 49.5
DCAR_029953 Daucus carota HOM05D004268 ORTHO05D004958 5.0e-14 81.3 107 51.4
Sc09g0000770 Simmondsia chinensis HOM05D004268 ORTHO05D004958 6.5e-14 80.9 108 51.9
Cfa009783 Carpinus fangiana HOM05D004268 ORTHO05D004958 1.1e-13 80.1 109 54.1
Oeu063326.1 Olea europaea HOM05D004268 ORTHO05D004958 1.1e-13 80.1 108 52.8
Glyma.15G275700 Glycine max HOM05D004268 ORTHO05D004958 1.9e-13 79.3 106 50.9
Ah.06g194080 Amaranthus hybridus HOM05D004268 ORTHO05D004958 2.5e-13 79.0 102 48.0
BraA06t23458Z Brassica rapa HOM05D004268 ORTHO05D004958 2.5e-13 79.0 104 51.9
Medtr4g037505 Medicago truncatula HOM05D004268 ORTHO05D004958 2.5e-13 79.0 110 49.1
TAR633G1399 Trochodendron aralioides HOM05D004268 ORTHO05D004958 2.5e-13 79.0 109 46.8
DCAR_031628 Daucus carota HOM05D004268 ORTHO05D004958 3.2e-13 78.6 107 47.7
Potri.009G052500 Populus trichocarpa HOM05D004268 ORTHO05D004958 3.2e-13 78.6 105 48.6
Glyma.10G089300 Glycine max HOM05D004268 ORTHO05D004958 4.2e-13 78.2 105 51.4
Glyma.10G089500 Glycine max HOM05D004268 ORTHO05D004958 4.2e-13 78.2 105 51.4
Lj3g0003624 Lotus japonicus HOM05D004268 ORTHO05D004958 4.2e-13 78.2 105 50.5
Psat7g196400 Pisum sativum HOM05D004268 ORTHO05D004958 4.2e-13 78.2 108 49.1
COL.COLO4_06120 Corchorus olitorius HOM05D004268 ORTHO05D004958 1.2e-12 76.6 108 48.1
DCAR_002077 Daucus carota HOM05D004268 ORTHO05D004958 1.2e-12 76.6 107 46.7
PGR102G2953 Punica granatum HOM05D004268 ORTHO05D004958 1.6e-12 76.3 109 47.7
QL01p004584 Quercus lobata HOM05D004268 ORTHO05D004958 1.6e-12 76.3 108 46.3
TWI34G1192 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 1.6e-12 76.3 109 50.5
Cpa.g.sc125.13 Carica papaya HOM05D004268 ORTHO05D004958 2.1e-12 75.9 108 47.2
unitig_8.g2993 Utricularia gibba HOM05D004268 ORTHO05D004958 2.1e-12 75.9 105 49.5
CDE05G3212 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 3.6e-12 75.1 105 46.7
ECA233G4176 Erigeron canadensis HOM05D004268 ORTHO05D004958 3.6e-12 75.1 109 46.8
EL10Ac2g04340 Beta vulgaris HOM05D004268 ORTHO05D004958 4.7e-12 74.7 103 47.6
Ciclev10033132m.g Citrus clementina HOM05D004268 ORTHO05D004958 6.1e-12 74.3 107 48.6
QL04p008292 Quercus lobata HOM05D004268 ORTHO05D004958 6.1e-12 74.3 112 47.3
Duzib138G1697 Durio zibethinus HOM05D004268 ORTHO05D004958 8.0e-12 73.9 106 52.8
Gohir.D08G164800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 8.0e-12 73.9 107 48.6
FvH4_3g28710 Fragaria vesca HOM05D004268 ORTHO05D004958 1.0e-11 73.6 106 50.0
FAN11G3362 Fragaria x ananassa HOM05D004268 ORTHO05D004958 1.0e-11 73.6 106 50.0
Lj3g0019333 Lotus japonicus HOM05D004268 ORTHO05D004958 1.0e-11 73.6 105 49.5
CDE05G0821 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 1.4e-11 73.2 97 46.4
Dinv22170 Davidia involucrata HOM05D004268 ORTHO05D004958 1.4e-11 73.2 95 54.7
FAN21G1561 Fragaria x ananassa HOM05D004268 ORTHO05D004958 1.4e-11 73.2 106 50.0
Gohir.A08G143800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 1.4e-11 73.2 107 48.6
Gorai.004G171800 Gossypium raimondii HOM05D004268 ORTHO05D004958 1.4e-11 73.2 107 48.6
FAN16G2720 Fragaria x ananassa HOM05D004268 ORTHO05D004958 1.8e-11 72.8 106 50.0
Atru.chr11.2609 Acer truncatum HOM05D004268 ORTHO05D004958 3.0e-11 72.0 109 45.9
VMungo1127G0621 Vigna mungo HOM05D004268 ORTHO05D004958 3.0e-11 72.0 106 47.2
Nitab4.5_0002741g0110 Nicotiana tabacum HOM05D004268 ORTHO05D004958 4.0e-11 71.6 41 82.9
TPR.G3668 Trifolium pratense HOM05D004268 ORTHO05D004958 4.0e-11 71.6 109 45.9
MBI02_g05661_MAGBIO Magnolia biondii HOM05D004268 ORTHO05D004958 5.2e-11 71.2 113 47.8
Thecc.01G409600 Theobroma cacao HOM05D004268 ORTHO05D004958 8.8e-11 70.5 106 50.0
HanXRQChr13g0401101 Helianthus annuus HOM05D004268 ORTHO05D004958 1.5e-10 69.7 109 44.0
PSO541G0301 Papaver somniferum HOM05D004268 ORTHO05D004958 1.5e-10 69.7 113 43.4
Phvul.011G009700 Phaseolus vulgaris HOM05D004268 ORTHO05D004958 1.5e-10 69.7 106 45.3
CSS0050517 Camellia sinensis var. sinensis HOM05D004268 ORTHO05D004958 3.4e-10 68.6 112 49.1
A03p43270 Brassica napus HOM05D046874 ORTHO05D042050 5.7e-10 67.8 58 63.8
PGR119G0693 Punica granatum HOM05D004268 ORTHO05D004958 5.7e-10 67.8 108 44.4
Ah.10g038780 Amaranthus hybridus HOM05D000040 ORTHO05D000267 7.5e-10 67.4 102 47.1
Nitab4.5_0004741g0020 Nicotiana tabacum HOM05D004268 ORTHO05D004958 7.5e-10 67.4 86 48.8
TWI32G0064 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 7.5e-10 67.4 109 49.5
Thecc.09G235200 Theobroma cacao HOM05D004268 ORTHO05D004958 2.2e-09 65.9 106 42.5
Manes.14G003500 Manihot esculenta HOM05D004268 ORTHO05D004958 4.9e-09 64.7 108 47.2
Peaxi162Scf00032g00064 Petunia axillaris HOM05D004268 ORTHO05D004958 8.3e-09 63.9 107 45.8
CANSAT54G2544 Cannabis sativa HOM05D004268 ORTHO05D004958 1.1e-08 63.5 113 45.1
MBI04_g40114_MAGBIO Magnolia biondii HOM05D000074 ORTHO05D000220 1.4e-08 63.2 108 45.4
Migut.D00609 Erythranthe guttata HOM05D004268 ORTHO05D004958 1.8e-08 62.8 41 78.0
Duzib133G0767 Durio zibethinus HOM05D004268 ORTHO05D004958 2.4e-08 62.4 107 45.8
MD03G1173700 Malus domestica HOM05D004268 ORTHO05D004958 1.2e-07 60.1 111 48.6
ATR0763G199 Amborella trichopoda HOM05D004268 ORTHO05D004958 2.0e-07 59.3 114 40.4
Dinv09347 Davidia involucrata HOM05D004268 ORTHO05D004958 2.0e-07 59.3 96 47.9
Prupe.4G250700 Prunus persica HOM05D004268 ORTHO05D004958 2.0e-07 59.3 108 44.4
MD11G1191900 Malus domestica HOM05D004268 ORTHO05D004958 2.7e-07 58.9 109 46.8
Nitab4.5_0002741g0120 Nicotiana tabacum HOM05D004268 ORTHO05D004958 2.7e-07 58.9 108 38.9
Eucgr.B03692 Eucalyptus grandis HOM05D004268 ORTHO05D004958 4.5e-07 58.2 109 42.2
PGSC0003DMG400004639 Solanum tuberosum HOM05D004268 ORTHO05D004958 5.9e-07 57.8 117 39.3
Migut.N02326 Erythranthe guttata HOM05D004268 ORTHO05D004958 7.7e-07 57.4 38 73.7
BcaB07g33586 Brassica carinata HOM05D004268 ORTHO05D004958 1.0e-06 57.0 113 40.7
QL01p004491 Quercus lobata HOM05D004268 ORTHO05D004958 1.0e-06 57.0 108 39.8
SEGI_11181 Sequoiadendron giganteum HOM05D004268 ORTHO05D004958 2.3e-06 55.8 118 38.1
Os02g0581100 Oryza sativa ssp. japonica HOM05D004268 ORTHO05D004958 2.9e-06 55.5 56 53.6
TAR623G0940 Trochodendron aralioides HOM05D004268 ORTHO05D004958 3.8e-06 55.1 105 41.0


User provided reference genes

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