Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g28184 Brassica carinata HOM05D004845 ORTHO05D005957 0.0e+00 1906.3 1110 100.0
BolC5t32952H Brassica oleracea HOM05D004845 ORTHO05D005957 0.0e+00 1906.3 1110 100.0
C05p42240 Brassica napus HOM05D004845 ORTHO05D005957 0.0e+00 1904.0 1110 99.6
BraA05t21625Z Brassica rapa HOM05D004845 ORTHO05D005957 0.0e+00 1812.7 1122 95.6
A05p27330 Brassica napus HOM05D004845 ORTHO05D005957 0.0e+00 1808.5 1123 95.4
BcaB06g26218 Brassica carinata HOM05D004845 ORTHO05D005957 0.0e+00 1566.6 1126 84.5
Sp3g19330 Schrenkiella parvula HOM05D004845 ORTHO05D005957 0.0e+00 1385.2 1162 74.9
AL3G35330 Arabidopsis lyrata HOM05D004845 ORTHO05D005957 0.0e+00 1344.7 1186 69.7
Thhalv10019924m.g Eutrema salsugineum HOM05D004845 ORTHO05D005957 0.0e+00 1328.2 1183 69.1
Carub.0003s2130 Capsella rubella HOM05D004845 ORTHO05D005957 0.0e+00 1318.9 1176 68.5
AT3G21290 Arabidopsis thaliana HOM05D004845 ORTHO05D005957 0.0e+00 1290.8 1186 68.7
CARHR097190 Cardamine hirsuta HOM05D004845 ORTHO05D005957 6.4e-293 1011.1 982 65.4
Aa31LG8G7990 Aethionema arabicum HOM05D004845 ORTHO05D005957 1.4e-287 993.4 1106 59.8
THA.LOC104817934 Tarenaya hassleriana HOM05D004845 ORTHO05D005957 2.4e-279 966.1 1258 52.3
THA.LOC104810560 Tarenaya hassleriana HOM05D004845 ORTHO05D005957 4.9e-269 931.8 1252 50.9
BcaC09g49066 Brassica carinata HOM05D004845 ORTHO05D005957 1.9e-241 840.1 1189 52.7
Manes.04G137600 Manihot esculenta HOM05D004845 ORTHO05D005957 1.4e-159 568.2 1181 40.1
Duzib160G0801 Durio zibethinus HOM05D004845 ORTHO05D005957 1.2e-153 548.5 1182 40.2
Potri.003G033100 Populus trichocarpa HOM05D004845 ORTHO05D005957 9.3e-151 538.9 1195 39.4
Gohir.D05G135700 Gossypium hirsutum HOM05D004845 ORTHO05D005957 1.8e-149 534.6 1177 39.9
Gorai.009G139700 Gossypium raimondii HOM05D004845 ORTHO05D005957 1.9e-148 531.2 1173 40.1
Gohir.A05G133700 Gossypium hirsutum HOM05D004845 ORTHO05D005957 2.5e-148 530.8 1175 39.8
Sabra03G0019000 Salix brachista HOM05D004845 ORTHO05D005957 2.5e-148 530.8 1217 38.2
Thecc.06G108000 Theobroma cacao HOM05D004845 ORTHO05D005957 3.3e-148 530.4 1274 39.3
QL05p015844 Quercus lobata HOM05D004845 ORTHO05D005957 4.5e-145 520.0 1212 39.1
C01p42960 Brassica napus HOM05D004845 ORTHO05D005957 9.3e-143 512.3 849 49.2
Atru.chr1.3636 Acer truncatum HOM05D004845 ORTHO05D005957 1.0e-141 508.8 1202 38.3
TWI31G1049 Tripterygium wilfordii HOM05D004845 ORTHO05D005957 1.8e-141 508.1 1263 37.9
Glyma.07G012400 Glycine max HOM05D004845 ORTHO05D005957 1.4e-138 498.4 1228 37.5
RcHm_v2.0_Chr2g0142521 Rosa chinensis HOM05D004845 ORTHO05D005957 1.4e-138 498.4 1249 36.6
CiPaw.02G142000 Carya illinoinensis HOM05D004845 ORTHO05D005957 3.1e-138 497.3 1257 37.3
Glyma.08G196100 Glycine max HOM05D004845 ORTHO05D005957 1.5e-137 495.0 1230 37.4
Dinv30397 Davidia involucrata HOM05D004845 ORTHO05D005957 2.6e-137 494.2 1223 37.9
Prupe.3G052500 Prunus persica HOM05D004845 ORTHO05D005957 5.5e-135 486.5 1263 39.1
Cfa003605 Carpinus fangiana HOM05D004845 ORTHO05D005957 7.1e-135 486.1 1193 38.8
Ciclev10024729m.g Citrus clementina HOM05D004845 ORTHO05D005957 7.1e-135 486.1 1230 37.8
Duzib235G0635 Durio zibethinus HOM05D004845 ORTHO05D005957 2.7e-134 484.2 1240 37.2
CANSAT56G3316 Cannabis sativa HOM05D004845 ORTHO05D005957 3.5e-134 483.8 1184 38.3
FvH4_6g32970 Fragaria vesca HOM05D004845 ORTHO05D005957 6.7e-133 479.6 1254 36.9
Sed0014548 Sechium edule HOM05D004845 ORTHO05D005957 1.9e-132 478.0 1264 36.6
FAN14G1946 Fragaria x ananassa HOM05D004845 ORTHO05D005957 5.7e-132 476.5 1254 36.8
FAN09G4600 Fragaria x ananassa HOM05D004845 ORTHO05D005957 4.1e-130 470.3 1255 37.3
MELO3C013040.2 Cucumis melo HOM05D004845 ORTHO05D005957 2.6e-129 467.6 1265 36.2
CsaV3_3G044010 Cucumis sativus L. HOM05D004845 ORTHO05D005957 3.4e-129 467.2 1254 35.6
Cpa.g.sc131.35 Carica papaya HOM05D004845 ORTHO05D005957 2.5e-127 461.1 1150 38.7
FAN02G0586 Fragaria x ananassa HOM05D004845 ORTHO05D005957 2.5e-127 461.1 1184 37.5
ClCG07G013620 Citrullus lanatus HOM05D004845 ORTHO05D005957 7.9e-126 456.1 1264 35.8
MD09G1196000 Malus domestica HOM05D004845 ORTHO05D005957 1.3e-125 455.3 1180 37.1
Manes.11G028800 Manihot esculenta HOM05D004845 ORTHO05D005957 1.3e-125 455.3 1264 36.3
TAR629G3185 Trochodendron aralioides HOM05D004845 ORTHO05D005957 5.1e-125 453.4 1208 37.2
Dinv37932 Davidia involucrata HOM05D004845 ORTHO05D005957 3.3e-124 450.7 1255 36.3
Lj3g0006882 Lotus japonicus HOM05D004845 ORTHO05D005957 2.8e-123 447.6 1233 35.8
arahy.Tifrunner.gnm1.ann1.JSQ5P9 Arachis hypogaea HOM05D004845 ORTHO05D005957 3.1e-122 444.1 1186 36.9
Sed0023831 Sechium edule HOM05D004845 ORTHO05D005957 3.1e-122 444.1 1176 35.9
Medtr8g015620 Medicago truncatula HOM05D004845 ORTHO05D005957 4.5e-121 440.3 1183 36.5
vmacro18819 Vaccinium macrocarpon HOM05D004845 ORTHO05D005957 1.7e-120 438.3 1202 35.1
Ca_23299_v3 Cicer arietinum L. HOM05D004845 ORTHO05D005957 5.0e-120 436.8 1182 36.1
Rhsim08G0231600 Rhododendron simsii HOM05D004845 ORTHO05D005957 6.7e-117 426.4 1212 34.8
COL.COLO4_30609 Corchorus olitorius HOM05D004845 ORTHO05D005957 7.4e-116 422.9 1110 34.6
VMungo0331G0639 Vigna mungo HOM05D004845 ORTHO05D005957 2.2e-115 421.4 1216 34.6
Phvul.010G141800 Phaseolus vulgaris HOM05D004845 ORTHO05D005957 3.1e-114 417.5 1218 34.6
Nn1g08771 Nelumbo nucifera HOM05D004845 ORTHO05D005957 1.2e-113 415.6 1209 35.8
arahy.Tifrunner.gnm1.ann1.7F0ZFP Arachis hypogaea HOM05D004845 ORTHO05D005957 1.1e-111 409.1 1185 35.7
GSVIVG01016889001 Vitis vinifera HOM05D004845 ORTHO05D005957 6.1e-110 403.3 1199 32.4
Lj3g0020048 Lotus japonicus HOM05D004845 ORTHO05D005957 7.9e-110 402.9 1135 35.0
MSTRG.22604 Avicennia marina HOM05D004845 ORTHO05D005957 1.4e-109 402.1 1262 34.1
DCAR_026375 Daucus carota HOM05D004845 ORTHO05D005957 3.9e-109 400.6 1182 35.4
Sc12g0009860 Simmondsia chinensis HOM05D004845 ORTHO05D005957 8.8e-109 399.4 1166 36.6
Hund07666 Selenicereus undatus HOM05D004845 ORTHO05D005957 2.6e-108 397.9 1166 35.3
Peaxi162Scf00038g01322 Petunia axillaris HOM05D004845 ORTHO05D005957 3.1e-106 391.0 1248 36.6
Sopen03g040190 Solanum pennellii HOM05D004845 ORTHO05D005957 4.5e-105 387.1 1252 35.8
Lalb_Chr04g0263091 Lupinus albus HOM05D004845 ORTHO05D005957 1.0e-104 386.0 1212 33.9
FAN05G2503 Fragaria x ananassa HOM05D004845 ORTHO05D005957 2.2e-104 384.8 1403 31.5
CAN.G1668.10 Capsicum annuum HOM05D004845 ORTHO05D005957 1.8e-101 375.2 1150 35.6
Solyc03g121380.3 Solanum lycopersicum HOM05D004845 ORTHO05D005957 2.3e-101 374.8 1220 35.4
PGR102G0505 Punica granatum HOM05D004845 ORTHO05D005957 4.0e-101 374.0 1143 35.2
Migut.I01002 Erythranthe guttata HOM05D004845 ORTHO05D005957 1.5e-100 372.1 1216 33.6
ECA232G1750 Erigeron canadensis HOM05D004845 ORTHO05D005957 9.7e-100 369.4 1114 36.4
Cc04_g02180 Coffea canephora HOM05D004845 ORTHO05D005957 4.2e-95 354.0 1196 33.2
Lsat_1_v5_gn_4_95940 Lactuca sativa HOM05D004845 ORTHO05D005957 6.1e-94 350.1 1064 34.8
AUR62023919 Chenopodium quinoa HOM05D004845 ORTHO05D005957 2.3e-93 348.2 1163 31.4
HanXRQChr09g0276331 Helianthus annuus HOM05D004845 ORTHO05D005957 2.3e-93 348.2 1088 34.7
MD17G1176700 Malus domestica HOM05D004845 ORTHO05D005957 3.0e-93 347.8 1188 33.2
EL10Ac9g21102 Beta vulgaris HOM05D004845 ORTHO05D005957 6.8e-93 346.7 1152 34.9
PSO170G6909 Papaver somniferum HOM05D004845 ORTHO05D005957 2.2e-91 341.7 1149 34.9
AUR62038325 Chenopodium quinoa HOM05D004845 ORTHO05D005957 2.4e-90 338.2 1165 30.9
HanXRQChr05g0140141 Helianthus annuus HOM05D004845 ORTHO05D005957 3.1e-90 337.8 1060 35.2
Oeu052809.1 Olea europaea HOM05D004845 ORTHO05D005957 4.7e-86 323.9 1093 34.0
Aqoxy7G00060 Aquilegia oxysepala HOM05D004845 ORTHO05D005957 6.1e-86 323.6 1196 33.1
SGA_v2.0_scaffold71G23747 Striga asiatica HOM05D004845 ORTHO05D005957 1.4e-85 322.4 1104 33.2
Actinidia32134 Actinidia chinensis HOM05D004845 ORTHO05D005957 8.8e-85 319.7 1035 34.5
Oeu026736.3 Olea europaea HOM05D004845 ORTHO05D005957 5.7e-84 317.0 1130 32.4
DCAR_007608 Daucus carota HOM05D004845 ORTHO05D005957 3.5e-81 307.8 1099 33.7
ATR0730G184 Amborella trichopoda HOM05D004845 ORTHO05D005957 4.3e-79 300.8 1206 31.3
CDE10G0270 Ceratophyllum demersum HOM05D004845 ORTHO05D005957 1.6e-73 282.3 1141 31.7
Nitab4.5_0004848g0010 Nicotiana tabacum HOM05D004845 ORTHO05D005957 5.0e-72 277.3 1141 34.4
Zm00001eb006560 Zea mays HOM05D004845 ORTHO05D005957 1.1e-66 259.6 1178 30.1
Ah.01g016900 Amaranthus hybridus HOM05D004845 ORTHO05D005957 1.2e-65 256.1 1107 33.2
SGA_v2.0_scaffold45G16992 Striga asiatica HOM05D004845 ORTHO05D005957 1.9e-63 248.8 350 46.3
Eucgr.J02886 Eucalyptus grandis HOM05D004845 ORTHO05D005957 5.6e-63 247.3 1008 32.1
CDE10G0876 Ceratophyllum demersum HOM05D004845 ORTHO05D005957 1.8e-61 242.3 362 46.7
Zm00001eb401540 Zea mays HOM05D004845 ORTHO05D005957 2.3e-61 241.9 1164 30.0
TPR.G8763 Trifolium pratense HOM05D004845 ORTHO05D005957 8.9e-61 240.0 1191 29.4
Psat4g193760 Pisum sativum HOM05D004845 ORTHO05D005957 2.8e-54 218.4 1018 30.1
SEGI_05846 Sequoiadendron giganteum HOM05D004845 ORTHO05D005957 8.1e-54 216.9 1256 30.0
Actinidia21743 Actinidia chinensis HOM05D004845 ORTHO05D005957 6.4e-51 207.2 326 45.7
Lalb_Chr15g0087461 Lupinus albus HOM05D004845 ORTHO05D005957 1.6e-49 202.6 1002 27.7
HPP92_028291 Vanilla planifolia HOM05D004845 ORTHO05D005957 1.5e-47 196.1 143 69.2
SEGI_07021 Sequoiadendron giganteum HOM05D004845 ORTHO05D005957 1.8e-45 189.1 1204 29.7
Lalb_Chr14g0372871 Lupinus albus HOM05D004845 ORTHO05D005957 3.4e-44 184.9 129 68.2
Duzib192G0218 Durio zibethinus HOM05D004845 ORTHO05D005957 4.4e-44 184.5 276 44.9
Actinidia21742 Actinidia chinensis HOM05D004845 ORTHO05D005957 7.1e-42 177.2 835 28.1
unitig_749.g14048 Utricularia gibba HOM05D004845 ORTHO05D005957 7.1e-42 177.2 1005 29.3
CSS0001379 Camellia sinensis var. sinensis HOM05D004845 ORTHO05D005957 2.1e-41 175.6 654 29.2
BolC1t04239H Brassica oleracea HOM05D004845 ORTHO05D005957 3.0e-40 171.8 140 69.3
BolC1t04240H Brassica oleracea HOM05D004845 ORTHO05D005957 6.6e-40 170.6 140 68.6
Haze_15920 Corylus avellana HOM05D004845 ORTHO05D005957 1.4e-37 162.9 542 31.9
Lj5C49T6 Lonicera japonica HOM05D004845 ORTHO05D005957 2.6e-36 158.7 945 28.6
Medtr8g015610 Medicago truncatula HOM05D004845 ORTHO05D005957 1.6e-33 149.4 1002 24.6
Pp3c12_1570 Physcomitrium patens HOM05D004845 ORTHO05D005957 1.1e-31 143.3 458 31.7
C01p42950 Brassica napus HOM05D004845 ORTHO05D005957 2.5e-31 142.1 156 55.1
SMO334G0114 Selaginella moellendorffii HOM05D004845 ORTHO05D005957 7.4e-31 140.6 357 35.6
MBI01_g37799_MAGBIO Magnolia biondii HOM05D004845 ORTHO05D005957 1.6e-30 139.4 655 27.9
AagrBONN_evm.TU.Sc2ySwM_344.5033 Anthoceros agrestis HOM05D004845 ORTHO05D005957 8.1e-30 137.1 368 33.4
Mapoly0021s0057 Marchantia polymorpha HOM05D004845 ORTHO05D005957 4.0e-29 134.8 355 35.8
Lalb_Chr14g0372881 Lupinus albus HOM05D004845 ORTHO05D005957 5.5e-26 124.4 954 28.5
Atru.chr1.3631 Acer truncatum HOM05D001194 ORTHO05D005909 9.3e-26 123.6 286 37.1
CBR_g20996 Chara braunii HOM05D004845 ORTHO05D005957 3.1e-21 108.6 151 44.4
CDE10G0326 Ceratophyllum demersum HOM05D004845 ORTHO05D005957 4.0e-21 108.2 523 25.2
HPP92_028293 Vanilla planifolia HOM05D004845 ORTHO05D005957 7.6e-20 104.0 189 33.9
Haze_15921 Corylus avellana HOM05D004845 ORTHO05D005957 1.7e-19 102.8 233 36.9
unitig_749.g14049 Utricularia gibba HOM05D004845 ORTHO05D005957 6.5e-19 100.9 104 46.2
SHI11164 Sapria himalayana HOM05D004845 ORTHO05D003034 1.2e-17 96.7 61 73.8
Os03g0187100 Oryza sativa ssp. japonica HOM05D004845 ORTHO05D005957 2.3e-16 92.4 538 25.8
Ca_23298_v3 Cicer arietinum L. HOM05D004845 ORTHO05D005957 2.5e-15 89.0 145 38.6
BolC1t04238H Brassica oleracea HOM05D004845 ORTHO05D005957 3.3e-15 88.6 54 77.8
Zm00001eb424050 Zea mays HOM05D002942 ORTHO05D003270 3.7e-14 85.1 72 54.2
Cpa.g.sc131.32 Carica papaya HOM05D004845 ORTHO05D005957 6.3e-14 84.3 129 51.2
Actinidia32135 Actinidia chinensis HOM05D004845 ORTHO05D005957 4.5e-12 78.2 133 46.6
PGSC0003DMG400002508 Solanum tuberosum HOM05D004845 ORTHO05D005957 1.6e-09 69.7 127 45.7
SHI11163 Sapria himalayana HOM05D004845 ORTHO05D005957 4.6e-09 68.2 55 61.8
CBR_g20995 Chara braunii HOM05D004845 ORTHO05D005957 8.8e-08 63.9 111 34.2
Ca_23296_v3 Cicer arietinum L. HOM05D004845 ORTHO05D005957 8.8e-08 63.9 257 28.4
Medtr1g021875 Medicago truncatula HOM05D004845 ORTHO05D005957 1.1e-07 63.5 62 54.8
SHI11167 Sapria himalayana HOM05D004845 ORTHO05D005957 6.3e-06 57.8 199 31.2


User provided reference genes

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