Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g28162 Brassica carinata HOM05D005247 ORTHO05D006571 1.2e-219 766.1 385 100.0
C05p41980 Brassica napus HOM05D005247 ORTHO05D006571 1.2e-219 766.1 385 100.0
BolC5t32932H Brassica oleracea HOM05D005247 ORTHO05D006571 3.2e-215 751.5 401 96.0
A05p27200 Brassica napus HOM05D005247 ORTHO05D006571 1.8e-210 735.7 390 95.6
BraA05t21609Z Brassica rapa HOM05D005247 ORTHO05D006571 1.3e-208 729.6 395 94.4
Sp3g19500 Schrenkiella parvula HOM05D005247 ORTHO05D006571 3.0e-205 718.4 394 92.1
BcaB06g26247 Brassica carinata HOM05D005247 ORTHO05D006571 3.9e-205 718.0 385 94.0
AT3G21465 Arabidopsis thaliana HOM05D005247 ORTHO05D006571 4.8e-187 657.9 396 85.6
AL3G35540 Arabidopsis lyrata HOM05D005247 ORTHO05D006571 5.4e-183 644.4 393 84.7
Carub.0003s2149 Capsella rubella HOM05D005247 ORTHO05D006571 1.3e-181 639.8 398 81.7
AT4G15640 Arabidopsis thaliana HOM05D005247 ORTHO05D006571 1.5e-169 599.7 391 77.5
THA.LOC104802559 Tarenaya hassleriana HOM05D005247 ORTHO05D006571 2.6e-169 599.0 395 77.2
Carub.0007s2616 Capsella rubella HOM05D005247 ORTHO05D006571 3.4e-169 598.6 391 77.5
CARHR290040 Cardamine hirsuta HOM05D005247 ORTHO05D006571 3.2e-167 592.0 391 77.0
Thhalv10025397m.g Eutrema salsugineum HOM05D005247 ORTHO05D006571 1.6e-166 589.7 396 76.3
Sp7g13890 Schrenkiella parvula HOM05D005247 ORTHO05D006571 8.7e-165 583.9 395 77.0
Aa31LG9G1800 Aethionema arabicum HOM05D005247 ORTHO05D006571 2.9e-160 568.9 389 74.0
AL7G39790 Arabidopsis lyrata HOM05D005247 ORTHO05D006571 7.9e-158 560.8 328 85.1
Thhalv10021000m.g Eutrema salsugineum HOM05D005247 ORTHO05D006571 8.5e-152 540.8 393 72.0
QL06p007567 Quercus lobata HOM05D005247 ORTHO05D006571 5.5e-135 485.0 399 61.7
Prupe.1G141100 Prunus persica HOM05D005247 ORTHO05D006571 2.4e-130 469.5 399 59.6
MD13G1173000 Malus domestica HOM05D005247 ORTHO05D006571 1.1e-127 460.7 400 58.5
Atru.chr4.2766 Acer truncatum HOM05D005247 ORTHO05D006571 1.4e-125 453.8 405 58.8
MD16G1174400 Malus domestica HOM05D005247 ORTHO05D006571 5.2e-125 451.8 399 57.4
Duzib151G0039 Durio zibethinus HOM05D005247 ORTHO05D006571 3.4e-124 449.1 393 59.0
CiPaw.02G086000 Carya illinoinensis HOM05D005247 ORTHO05D006571 2.2e-123 446.4 396 57.1
Ciclev10005079m.g Citrus clementina HOM05D005247 ORTHO05D006571 4.8e-123 445.3 368 61.7
Gohir.A09G233900 Gossypium hirsutum HOM05D005247 ORTHO05D006571 4.8e-123 445.3 390 59.0
RcHm_v2.0_Chr4g0421281 Rosa chinensis HOM05D005247 ORTHO05D006571 6.3e-123 444.9 397 58.9
Gorai.006G257600 Gossypium raimondii HOM05D005247 ORTHO05D006571 8.3e-123 444.5 390 59.0
Hma1.2p1_0078F.1_g040780 Hydrangea macrophylla HOM05D005247 ORTHO05D006571 9.1e-122 441.0 399 56.1
Actinidia23422 Actinidia chinensis HOM05D005247 ORTHO05D006571 1.2e-121 440.7 406 56.2
CSS0036429 Camellia sinensis var. sinensis HOM05D005247 ORTHO05D006571 1.6e-121 440.3 404 56.7
Cfa015350 Carpinus fangiana HOM05D005247 ORTHO05D006571 5.9e-121 438.3 414 56.0
Thecc.04G278500 Theobroma cacao HOM05D005247 ORTHO05D006571 1.3e-120 437.2 391 57.8
Lalb_Chr12g0196461 Lupinus albus HOM05D005247 ORTHO05D006571 1.7e-120 436.8 383 56.1
Lj4g0024405 Lotus japonicus HOM05D005247 ORTHO05D006571 5.0e-120 435.3 386 57.3
TPR.G28788 Trifolium pratense HOM05D005247 ORTHO05D006571 6.5e-120 434.9 381 57.2
Gohir.D09G234700 Gossypium hirsutum HOM05D005247 ORTHO05D006571 1.5e-119 433.7 390 58.2
Psat5g125320 Pisum sativum HOM05D005247 ORTHO05D006571 1.5e-119 433.7 383 56.7
TAR362G0112 Trochodendron aralioides HOM05D005247 ORTHO05D006571 1.5e-119 433.7 400 57.5
BolC8t48291H Brassica oleracea HOM05D005247 ORTHO05D006571 1.6e-118 430.3 449 56.1
Nn7g38324 Nelumbo nucifera HOM05D005247 ORTHO05D006571 1.6e-118 430.3 404 54.5
Ca_21545_v3 Cicer arietinum L. HOM05D005247 ORTHO05D006571 2.8e-118 429.5 387 55.3
Phvul.003G101400 Phaseolus vulgaris HOM05D005247 ORTHO05D006571 4.7e-118 428.7 383 55.9
Cpa.g.sc16.124 Carica papaya HOM05D005247 ORTHO05D006571 8.0e-118 427.9 379 57.5
Potri.008G205300 Populus trichocarpa HOM05D005247 ORTHO05D006571 1.4e-117 427.2 386 57.3
Glyma.17G023300 Glycine max HOM05D005247 ORTHO05D006571 4.0e-117 425.6 321 62.9
Medtr3g069790 Medicago truncatula HOM05D005247 ORTHO05D006571 2.0e-116 423.3 379 56.2
PGR142G1936 Punica granatum HOM05D005247 ORTHO05D006571 2.0e-116 423.3 326 61.3
FvH4_4g17340 Fragaria vesca HOM05D005247 ORTHO05D006571 3.4e-116 422.5 382 57.3
BcaB04g18303 Brassica carinata HOM05D005247 ORTHO05D006571 5.7e-116 421.8 297 73.7
Eucgr.H03774 Eucalyptus grandis HOM05D005247 ORTHO05D006571 5.7e-116 421.8 318 62.9
CANSAT78G0941 Cannabis sativa HOM05D005247 ORTHO05D006571 9.8e-116 421.0 391 56.5
FAN07G0437 Fragaria x ananassa HOM05D005247 ORTHO05D006571 2.8e-115 419.5 386 57.5
Glyma.07G251000 Glycine max HOM05D005247 ORTHO05D006571 4.9e-115 418.7 381 55.4
Sc13g0003580 Simmondsia chinensis HOM05D005247 ORTHO05D006571 1.1e-114 417.5 327 59.9
Rhsim04G0216900 Rhododendron simsii HOM05D005247 ORTHO05D006571 4.1e-114 415.6 352 59.1
TPR.G29803 Trifolium pratense HOM05D005247 ORTHO05D006571 4.1e-114 415.6 374 57.0
Aqoxy5G00647 Aquilegia oxysepala HOM05D005247 ORTHO05D006571 9.2e-114 414.5 406 52.0
FAN17G1560 Fragaria x ananassa HOM05D005247 ORTHO05D006571 4.5e-113 412.1 394 56.1
Manes.15G016200 Manihot esculenta HOM05D005247 ORTHO05D006571 2.3e-112 409.8 324 61.7
VMungo1215G2055 Vigna mungo HOM05D005247 ORTHO05D006571 2.3e-112 409.8 391 53.5
FAN12G4219 Fragaria x ananassa HOM05D005247 ORTHO05D006571 1.5e-111 407.1 408 53.9
GSVIVG01017794001 Vitis vinifera HOM05D005247 ORTHO05D006571 1.5e-111 407.1 324 62.3
ECA234G2791 Erigeron canadensis HOM05D005247 ORTHO05D006571 3.3e-111 406.0 339 58.4
TWI09G0062 Tripterygium wilfordii HOM05D005247 ORTHO05D006571 3.3e-111 406.0 395 52.7
Solyc07g041930.3 Solanum lycopersicum HOM05D005247 ORTHO05D006571 4.3e-111 405.6 399 50.9
Cc03_g02260 Coffea canephora HOM05D005247 ORTHO05D006571 5.6e-111 405.2 403 53.6
Sopen07g021430 Solanum pennellii HOM05D005247 ORTHO05D006571 2.8e-110 402.9 365 54.0
Lsat_1_v5_gn_4_34220 Lactuca sativa HOM05D005247 ORTHO05D006571 1.0e-109 401.0 321 58.9
vmacro08197 Vaccinium macrocarpon HOM05D005247 ORTHO05D006571 1.8e-109 400.2 343 56.3
Ah.13g074520 Amaranthus hybridus HOM05D005247 ORTHO05D006571 6.8e-109 398.3 309 59.9
Haze_01257 Corylus avellana HOM05D005247 ORTHO05D006571 4.9e-107 392.1 463 49.0
EL10Ac3g06569 Beta vulgaris HOM05D005247 ORTHO05D006571 6.4e-107 391.7 306 59.2
AUR62043783 Chenopodium quinoa HOM05D005247 ORTHO05D006571 6.4e-107 391.7 384 51.6
Nitab4.5_0006478g0050 Nicotiana tabacum HOM05D005247 ORTHO05D006571 8.3e-107 391.3 328 56.1
AUR62040732 Chenopodium quinoa HOM05D005247 ORTHO05D006571 1.8e-106 390.2 381 52.5
CAN.G311.32 Capsicum annuum HOM05D005247 ORTHO05D006571 5.4e-106 388.7 320 56.6
Nitab4.5_0009436g0020 Nicotiana tabacum HOM05D005247 ORTHO05D006571 5.4e-106 388.7 402 48.5
DCAR_024549 Daucus carota HOM05D005247 ORTHO05D006571 1.2e-105 387.5 303 62.4
Nitab4.5_0001357g0080 Nicotiana tabacum HOM05D005247 ORTHO05D006571 2.7e-105 386.3 327 55.7
HanXRQChr17g0562111 Helianthus annuus HOM05D005247 ORTHO05D006571 3.5e-105 386.0 334 57.2
MSTRG.21809 Avicennia marina HOM05D005247 ORTHO05D006571 5.0e-104 382.1 321 57.6
Nitab4.5_0000343g0170 Nicotiana tabacum HOM05D005247 ORTHO05D006571 6.6e-104 381.7 324 55.2
TAR633G1275 Trochodendron aralioides HOM05D005247 ORTHO05D006571 8.6e-104 381.3 322 59.3
Peaxi162Scf00127g00146 Petunia axillaris HOM05D005247 ORTHO05D006571 1.2e-102 377.5 308 55.8
Dinv38319 Davidia involucrata HOM05D005247 ORTHO05D006571 3.6e-102 375.9 329 58.4
PSO541G1846 Papaver somniferum HOM05D005247 ORTHO05D006571 8.0e-102 374.8 402 49.8
arahy.Tifrunner.gnm1.ann1.8Y06GW Arachis hypogaea HOM05D005247 ORTHO05D006571 3.1e-101 372.9 380 51.1
arahy.Tifrunner.gnm1.ann1.A4UT9N Arachis hypogaea HOM05D005247 ORTHO05D006571 9.8e-100 367.9 380 50.8
PSO675G0879 Papaver somniferum HOM05D005247 ORTHO05D006571 1.3e-99 367.5 401 48.4
CsaV3_3G014210 Cucumis sativus L. HOM05D005247 ORTHO05D006571 3.2e-98 362.8 382 52.4
SGA_v2.0_scaffold89G27537 Striga asiatica HOM05D005247 ORTHO05D006571 1.6e-97 360.5 332 52.4
ClCG05G005860 Citrullus lanatus HOM05D005247 ORTHO05D006571 3.0e-96 356.3 383 51.7
FAN12G3211 Fragaria x ananassa HOM05D005247 ORTHO05D006571 2.5e-95 353.2 332 53.9
Migut.N00115 Erythranthe guttata HOM05D005247 ORTHO05D006571 3.3e-95 352.8 388 48.7
Sed0017520 Sechium edule HOM05D005247 ORTHO05D006571 5.6e-95 352.1 389 50.1
Zm00001eb330100 Zea mays HOM05D005247 ORTHO05D006571 1.3e-91 340.9 354 48.0
ATR0706G238 Amborella trichopoda HOM05D005247 ORTHO05D006571 2.2e-91 340.1 388 46.9
Dinv44420 Davidia involucrata HOM05D005247 ORTHO05D006571 1.1e-90 337.8 313 55.0
SGA_v2.0_scaffold175G39318 Striga asiatica HOM05D005247 ORTHO05D006571 4.1e-90 335.9 320 51.2
Os07g0668200 Oryza sativa ssp. japonica HOM05D005247 ORTHO05D006571 5.4e-90 335.5 340 48.2
unitig_748.g7195 Utricularia gibba HOM05D005247 ORTHO05D006571 1.5e-87 327.4 317 49.5
Hma1.2p1_3003F.1_g331535 Hydrangea macrophylla HOM05D005247 ORTHO05D006571 1.2e-81 307.8 345 47.8
Atru.chr4.2761 Acer truncatum HOM05D005247 ORTHO05D006571 1.1e-79 301.2 281 56.9
MELO3C006614.2 Cucumis melo HOM05D005247 ORTHO05D006571 1.5e-79 300.8 299 53.8
vmacro08194 Vaccinium macrocarpon HOM05D005247 ORTHO05D006571 2.6e-76 290.0 272 55.9
Sabra08G0156600 Salix brachista HOM05D005247 ORTHO05D006571 4.4e-76 289.3 265 56.2
COL.COLO4_13921 Corchorus olitorius HOM05D005247 ORTHO05D006571 6.4e-75 285.4 357 44.8
Eucgr.H03753 Eucalyptus grandis HOM05D005247 ORTHO05D006571 6.0e-73 278.9 229 58.5
Psat4g226360 Pisum sativum HOM05D005247 ORTHO05D006571 3.3e-71 273.1 385 42.1
Hund20585 Selenicereus undatus HOM05D005247 ORTHO05D006571 1.4e-69 267.7 203 62.1
Lj6A670T87 Lonicera japonica HOM05D005247 ORTHO05D006571 1.7e-59 234.2 261 49.4
BraA08t33173Z Brassica rapa HOM05D005247 ORTHO05D006571 7.4e-55 218.8 123 84.6
SHI00299 Sapria himalayana HOM05D005247 ORTHO05D000987 1.1e-50 204.9 248 44.8
RcHm_v2.0_Chr4g0421901 Rosa chinensis HOM05D005247 ORTHO05D006571 1.4e-50 204.5 266 44.4
Eucgr.C02045 Eucalyptus grandis HOM05D005247 ORTHO05D006571 2.3e-40 170.6 132 61.4
Pp3c14_15200 Physcomitrium patens HOM05D005247 ORTHO05D006571 1.3e-38 164.9 313 32.6
Psat5g177080 Pisum sativum HOM05D005247 ORTHO05D006571 1.8e-37 161.0 249 40.2
HPP92_013697 Vanilla planifolia HOM05D005247 ORTHO05D006571 4.5e-36 156.4 181 42.5
Mapoly0002s0143 Marchantia polymorpha HOM05D005247 ORTHO05D006571 7.7e-36 155.6 304 29.9
Sabra08G0156700 Salix brachista HOM05D005247 ORTHO05D006571 2.5e-34 150.6 123 61.0
BcaC07g37894 Brassica carinata HOM05D005247 ORTHO05D006571 4.7e-33 146.4 214 47.7
AagrBONN_evm.TU.Sc2ySwM_228.2885 Anthoceros agrestis HOM05D005247 ORTHO05D006571 2.2e-27 127.5 221 35.7
SEGI_33954 Sequoiadendron giganteum HOM05D005247 ORTHO05D000001 2.1e-25 120.9 149 40.3
Psat6g103040 Pisum sativum HOM05D005247 ORTHO05D006571 3.6e-25 120.2 77 68.8
Eucgr.F02603 Eucalyptus grandis HOM05D005247 ORTHO05D006571 1.1e-21 108.6 77 62.3
RcHm_v2.0_Chr4g0421891 Rosa chinensis HOM05D005247 ORTHO05D006571 1.4e-21 108.2 102 54.9
SMO202G0041 Selaginella moellendorffii HOM05D005247 ORTHO05D006571 4.5e-20 103.2 267 25.8
CBR_g30222 Chara braunii HOM05D005247 ORTHO05D006571 4.2e-18 96.7 315 24.1
Eucgr.H03759 Eucalyptus grandis HOM05D005247 ORTHO05D006571 5.5e-18 96.3 87 51.7
Actinidia40231 Actinidia chinensis HOM05D005247 ORTHO05D006571 1.8e-16 91.3 91 47.3
CAN.G640.20 Capsicum annuum HOM05D005247 ORTHO05D006571 3.3e-15 87.0 114 37.7
Pp3c14_7470 Physcomitrium patens HOM05D005247 ORTHO05D006571 4.1e-13 80.1 311 23.2
CAN.G640.21 Capsicum annuum HOM05D005247 ORTHO05D006571 1.5e-10 71.6 71 53.5
FAN22G1325 Fragaria x ananassa HOM05D005247 ORTHO05D006571 6.1e-09 66.2 70 47.1
Hund28065 Selenicereus undatus HOM05D000003 ORTHO05D000006 8.8e-08 62.4 162 28.4
Hund28074 Selenicereus undatus HOM05D000003 ORTHO05D000006 8.8e-08 62.4 162 28.4
Eucgr.H03758 Eucalyptus grandis HOM05D005247 ORTHO05D006571 8.3e-06 55.8 39 59.0


User provided reference genes

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