Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g28094 Brassica carinata HOM05D007061 ORTHO05D009017 8.0e-258 893.3 456 100.0
C05p41210 Brassica napus HOM05D007061 ORTHO05D009017 1.8e-225 785.8 459 90.6
A05p26620 Brassica napus HOM05D007061 ORTHO05D009017 7.8e-213 743.8 460 87.0
BraA05t21537Z Brassica rapa HOM05D007061 ORTHO05D009017 7.8e-213 743.8 460 87.0
Sp1g41850 Schrenkiella parvula HOM05D007061 ORTHO05D009017 6.2e-194 681.0 467 81.2
BcaB02g10820 Brassica carinata HOM05D007061 ORTHO05D009017 2.9e-191 672.2 468 79.5
CARHR045980 Cardamine hirsuta HOM05D007061 ORTHO05D009017 1.5e-187 659.8 463 78.8
Thhalv10011478m.g Eutrema salsugineum HOM05D007061 ORTHO05D009017 4.3e-187 658.3 462 79.0
AL1G64530 Arabidopsis lyrata HOM05D007061 ORTHO05D009017 6.2e-186 654.4 464 78.4
Aa31LG10G30 Aethionema arabicum HOM05D007061 ORTHO05D009017 1.9e-174 616.3 461 74.0
Carub.0001s4486 Capsella rubella HOM05D007061 ORTHO05D009017 1.6e-170 603.2 404 80.2
THA.LOC104810275 Tarenaya hassleriana HOM05D007061 ORTHO05D009017 6.1e-165 584.7 441 71.7
Lalb_Chr03g0031881 Lupinus albus HOM05D007061 ORTHO05D009017 1.1e-158 563.9 439 67.0
Potri.010G173800 Populus trichocarpa HOM05D007061 ORTHO05D009017 4.2e-158 562.0 428 67.8
CANSAT35G1572 Cannabis sativa HOM05D007061 ORTHO05D009017 3.7e-154 548.9 443 65.7
QL04p093744 Quercus lobata HOM05D007061 ORTHO05D009017 6.3e-154 548.1 449 64.6
Psat4g170560 Pisum sativum HOM05D007061 ORTHO05D009017 2.4e-153 546.2 441 65.1
TPR.G9404 Trifolium pratense HOM05D007061 ORTHO05D009017 2.4e-153 546.2 441 65.8
MD10G1216400 Malus domestica HOM05D007061 ORTHO05D009017 5.3e-153 545.0 446 64.3
FvH4_3g14100 Fragaria vesca HOM05D007061 ORTHO05D009017 9.1e-153 544.3 424 67.0
Prupe.4G128300 Prunus persica HOM05D007061 ORTHO05D009017 1.5e-152 543.5 439 64.9
Nn7g38366 Nelumbo nucifera HOM05D007061 ORTHO05D009017 2.0e-152 543.1 428 65.2
Sabra10G0133700 Salix brachista HOM05D007061 ORTHO05D009017 4.5e-152 542.0 434 65.2
RcHm_v2.0_Chr5g0023411 Rosa chinensis HOM05D007061 ORTHO05D009017 5.9e-152 541.6 447 64.4
Gohir.D07G048400 Gossypium hirsutum HOM05D007061 ORTHO05D009017 7.7e-152 541.2 436 65.4
Lj3g0003258 Lotus japonicus HOM05D007061 ORTHO05D009017 7.7e-152 541.2 444 64.0
Gorai.001G051600 Gossypium raimondii HOM05D007061 ORTHO05D009017 2.9e-151 539.3 436 64.9
TAR627G0473 Trochodendron aralioides HOM05D007061 ORTHO05D009017 2.9e-151 539.3 423 65.7
Duzib213G0730 Durio zibethinus HOM05D007061 ORTHO05D009017 1.4e-150 537.0 436 65.1
CSS0041382 Camellia sinensis var. sinensis HOM05D007061 ORTHO05D009017 2.5e-150 536.2 424 65.8
CsaV3_6G013460 Cucumis sativus L. HOM05D007061 ORTHO05D009017 3.2e-150 535.8 424 66.0
Ca_23083_v3 Cicer arietinum L. HOM05D007061 ORTHO05D009017 7.2e-150 534.6 440 63.9
Glyma.08G234700 Glycine max HOM05D007061 ORTHO05D009017 7.2e-150 534.6 446 63.5
CiPaw.11G057200 Carya illinoinensis HOM05D007061 ORTHO05D009017 9.4e-150 534.3 428 64.5
Eucgr.K03462 Eucalyptus grandis HOM05D007061 ORTHO05D009017 1.2e-149 533.9 426 64.3
Aqoxy2G00253 Aquilegia oxysepala HOM05D007061 ORTHO05D009017 2.3e-148 529.6 448 60.9
arahy.Tifrunner.gnm1.ann1.69KP4R Arachis hypogaea HOM05D007061 ORTHO05D009017 3.0e-148 529.3 443 63.7
PGR044G2241 Punica granatum HOM05D007061 ORTHO05D009017 2.0e-147 526.6 461 61.8
Manes.16G047900 Manihot esculenta HOM05D007061 ORTHO05D009017 1.3e-146 523.9 414 65.7
PSO675G3863 Papaver somniferum HOM05D007061 ORTHO05D009017 1.3e-146 523.9 424 64.4
PSO675G0660 Papaver somniferum HOM05D007061 ORTHO05D009017 6.3e-146 521.5 450 60.9
ECA240G0752 Erigeron canadensis HOM05D007061 ORTHO05D009017 1.1e-145 520.8 424 64.9
Ciclev10004974m.g Citrus clementina HOM05D007061 ORTHO05D009017 1.4e-145 520.4 442 62.4
Hma1.2p1_0151F.1_g067030 Hydrangea macrophylla HOM05D007061 ORTHO05D009017 1.4e-145 520.4 424 63.9
ClCG02G018710 Citrullus lanatus HOM05D007061 ORTHO05D009017 1.2e-144 517.3 436 64.2
HanXRQChr03g0080291 Helianthus annuus HOM05D007061 ORTHO05D009017 2.9e-143 512.7 424 63.2
Lj2A10G39 Lonicera japonica HOM05D007061 ORTHO05D009017 6.5e-143 511.5 444 61.3
Lsat_1_v5_gn_7_70001 Lactuca sativa HOM05D007061 ORTHO05D009017 8.5e-143 511.1 424 63.7
Zm00001eb233280 Zea mays HOM05D007061 ORTHO05D009017 2.5e-142 509.6 419 61.8
Actinidia24658 Actinidia chinensis HOM05D007061 ORTHO05D009017 4.2e-142 508.8 416 62.3
Phvul.011G179100 Phaseolus vulgaris HOM05D007061 ORTHO05D009017 1.6e-141 506.9 402 65.9
vmacro11681 Vaccinium macrocarpon HOM05D007061 ORTHO05D009017 3.0e-140 502.7 472 56.8
ATR0763G190 Amborella trichopoda HOM05D007061 ORTHO05D009017 5.2e-140 501.9 435 61.6
GSVIVG01036723001 Vitis vinifera HOM05D007061 ORTHO05D009017 8.8e-140 501.1 403 64.8
Migut.M01505 Erythranthe guttata HOM05D007061 ORTHO05D009017 4.7e-133 478.8 421 58.7
FAN11G3441 Fragaria x ananassa HOM05D007061 ORTHO05D009017 4.7e-133 478.8 384 65.4
unitig_37.g12195 Utricularia gibba HOM05D007061 ORTHO05D009017 2.3e-132 476.5 422 58.5
arahy.Tifrunner.gnm1.ann1.RLLR5G Arachis hypogaea HOM05D007061 ORTHO05D009017 6.8e-132 474.9 641 46.0
BolC5t32863H Brassica oleracea HOM05D007061 ORTHO05D009017 7.5e-131 471.5 271 90.8
SalBow8G1251 Salvia bowleyana HOM05D007061 ORTHO05D009017 7.5e-131 471.5 533 51.0
Cc05_g16540 Coffea canephora HOM05D007061 ORTHO05D009017 4.8e-130 468.8 382 64.9
FAN25G0842 Fragaria x ananassa HOM05D007061 ORTHO05D009017 5.4e-121 438.7 443 55.1
Os02g0173700 Oryza sativa ssp. japonica HOM05D007061 ORTHO05D009017 7.0e-121 438.3 381 59.6
Gohir.A07G044000 Gossypium hirsutum HOM05D007061 ORTHO05D009017 2.0e-120 436.8 457 54.5
Pp3c22_13410 Physcomitrium patens HOM05D007061 ORTHO05D009017 3.5e-120 436.0 422 52.8
FAN16G1770 Fragaria x ananassa HOM05D007061 ORTHO05D009017 2.9e-119 433.0 439 55.6
SGA_v2.0_scaffold186G40180 Striga asiatica HOM05D007061 ORTHO05D009017 3.3e-118 429.5 422 57.1
Nitab4.5_0000029g0190 Nicotiana tabacum HOM05D007061 ORTHO05D009017 7.3e-118 428.3 424 55.0
Peaxi162Scf00452g00232 Petunia axillaris HOM05D007061 ORTHO05D009017 7.3e-118 428.3 424 54.0
AagrBONN_evm.TU.Sc2ySwM_228.3482 Anthoceros agrestis HOM05D007061 ORTHO05D009017 1.4e-116 424.1 448 50.7
Cpa.g.sc32.92 Carica papaya HOM05D007061 ORTHO05D009017 1.8e-116 423.7 367 62.7
CAN.G943.59 Capsicum annuum HOM05D007061 ORTHO05D009017 8.3e-114 414.8 424 54.2
SalBow8G1458 Salvia bowleyana HOM05D007061 ORTHO05D009017 1.8e-113 413.7 544 46.5
Mapoly0013s0085 Marchantia polymorpha HOM05D007061 ORTHO05D009017 5.4e-113 412.1 429 51.5
DCAR_009658 Daucus carota HOM05D007061 ORTHO05D009017 1.5e-110 404.1 356 59.8
Atru.chr1.57 Acer truncatum HOM05D007061 ORTHO05D009017 1.9e-110 403.7 349 61.3
MELO3C019630.2 Cucumis melo HOM05D007061 ORTHO05D009017 1.9e-110 403.7 367 60.5
SMO145G0248 Selaginella moellendorffii HOM05D007061 ORTHO05D009017 1.6e-109 400.6 428 50.5
AUR62037650 Chenopodium quinoa HOM05D007061 ORTHO05D009017 1.5e-107 394.0 340 62.6
CDE01G0579 Ceratophyllum demersum HOM05D007061 ORTHO05D009017 3.4e-107 392.9 422 52.1
Dinv42463 Davidia involucrata HOM05D007061 ORTHO05D009017 1.7e-106 390.6 334 59.9
AT1G54310 Arabidopsis thaliana HOM05D007061 ORTHO05D009017 1.7e-98 364.0 255 78.8
Nitab4.5_0002862g0050 Nicotiana tabacum HOM05D007061 ORTHO05D009017 4.6e-96 355.9 440 47.5
COL.COLO4_24973 Corchorus olitorius HOM05D007061 ORTHO05D009017 4.3e-94 349.4 437 48.5
Cre16.g649400 Chlamydomonas reinhardtii HOM05D007061 ORTHO05D009017 2.3e-87 327.0 447 44.3
Thecc.07G189200 Theobroma cacao HOM05D007061 ORTHO05D009017 5.6e-86 322.4 295 61.7
Haze_07765 Corylus avellana HOM05D007061 ORTHO05D009017 2.1e-85 320.5 314 55.1
VMungo1127G1118 Vigna mungo HOM05D007061 ORTHO05D009017 1.8e-84 317.4 300 59.0
TWI59G0237 Tripterygium wilfordii HOM05D007061 ORTHO05D009017 7.6e-83 312.0 277 60.3
Sc03g0005020 Simmondsia chinensis HOM05D007061 ORTHO05D009017 1.4e-81 307.8 276 60.5
Sed0001021 Sechium edule HOM05D007061 ORTHO05D009017 1.0e-79 301.6 303 56.4
PRCOL_00003223 Prasinoderma coloniale HOM05D007061 ORTHO05D009017 2.7e-72 276.9 439 37.8
arahy.Tifrunner.gnm1.ann1.R5CYRF Arachis hypogaea HOM05D007061 ORTHO05D009017 7.4e-70 268.9 200 68.5
Rhsim06G0244100 Rhododendron simsii HOM05D007061 ORTHO05D009017 7.4e-62 242.3 325 43.4
MCO09G574 Micromonas commoda HOM05D007061 ORTHO05D009017 6.2e-61 239.2 457 35.2
Actinidia26210 Actinidia chinensis HOM05D007061 ORTHO05D009017 1.9e-49 201.1 122 78.7
MD05G1238000 Malus domestica HOM05D007061 ORTHO05D009017 1.6e-48 198.0 127 78.0
Rhsim06G0244000 Rhododendron simsii HOM05D007061 ORTHO05D009017 1.1e-46 191.8 121 76.0
SEGI_33801 Sequoiadendron giganteum HOM05D007061 ORTHO05D009017 6.5e-42 176.0 122 66.4
HPP92_028078 Vanilla planifolia HOM05D007061 ORTHO05D009017 2.3e-39 167.5 115 71.3
Hma1.2p1_0151F.1_g067050 Hydrangea macrophylla HOM05D007061 ORTHO05D009017 9.7e-38 162.2 102 76.5
arahy.Tifrunner.gnm1.ann1.4L0SCR Arachis hypogaea HOM05D007061 ORTHO05D009017 1.3e-37 161.8 103 76.7
SEGI_31810 Sequoiadendron giganteum HOM05D007061 ORTHO05D009017 1.7e-37 161.4 212 45.8
SGA_v2.0_scaffold112G31643 Striga asiatica HOM05D007061 ORTHO05D009017 7.2e-33 146.0 78 88.5
SGA_v2.0_scaffold60G20904 Striga asiatica HOM05D007061 ORTHO05D009017 7.2e-33 146.0 78 88.5
RcHm_v2.0_Chr1g0324361 Rosa chinensis HOM05D007061 ORTHO05D009017 8.8e-31 139.0 75 85.3
HPP92_028076 Vanilla planifolia HOM05D007061 ORTHO05D009017 4.4e-30 136.7 73 83.6
Cre09.g407900 Chlamydomonas reinhardtii HOM05D007061 ORTHO05D009017 7.4e-30 136.0 425 26.6
AUR62041050 Chenopodium quinoa HOM05D007061 ORTHO05D009017 6.5e-18 96.3 63 68.3
Lsat_1_v5_gn_4_131100 Lactuca sativa HOM05D007061 ORTHO05D004266 1.0e-10 72.4 53 60.4
Lsat_1_v5_gn_0_28960 Lactuca sativa HOM05D004968 ORTHO05D005922 5.5e-09 66.6 47 74.5
Manes.04G057176 Manihot esculenta HOM05D007061 ORTHO05D005365 8.0e-08 62.8 46 69.6
Lsat_1_v5_gn_3_11400 Lactuca sativa HOM05D003461 ORTHO05D004386 1.4e-07 62.0 76 43.4
MD05G1238100 Malus domestica HOM05D007061 ORTHO05D009017 3.0e-07 60.8 42 66.7


User provided reference genes

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