Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g27963 Brassica carinata HOM05D007759 ORTHO05D008318 7.9e-91 337.0 163 100.0
BcaC02g11605 Brassica carinata HOM05D007759 ORTHO05D008318 2.3e-66 255.8 163 75.5
C04p13390 Brassica napus HOM05D007759 ORTHO05D008318 2.3e-66 255.8 163 75.5
BcaC05g28733 Brassica carinata HOM05D007759 ORTHO05D008318 1.1e-65 253.4 163 74.2
BolC5t33570H Brassica oleracea HOM05D007759 ORTHO05D008318 1.1e-65 253.4 163 74.2
BolC6t36449H Brassica oleracea HOM05D007759 ORTHO05D008318 9.7e-65 250.4 163 76.1
A09p35430 Brassica napus HOM05D007759 ORTHO05D008318 1.8e-63 246.1 163 73.6
C01p19090 Brassica napus HOM05D007759 ORTHO05D008318 5.3e-63 244.6 163 74.2
BraA08t32106Z Brassica rapa HOM05D007759 ORTHO05D008318 1.2e-62 243.4 163 73.0
BcaC02g10745 Brassica carinata HOM05D007759 ORTHO05D008318 3.2e-60 235.3 146 80.1
C04p25470 Brassica napus HOM05D007759 ORTHO05D008318 3.2e-60 235.3 146 80.1
BolC4t24065H Brassica oleracea HOM05D007759 ORTHO05D008318 3.2e-60 235.3 146 80.1
BcaC02g10768 Brassica carinata HOM05D007759 ORTHO05D008318 9.4e-60 233.8 142 80.3
C04p25320 Brassica napus HOM05D007759 ORTHO05D008318 9.4e-60 233.8 142 80.3
BcaB04g19215 Brassica carinata HOM05D007759 ORTHO05D008318 2.1e-59 232.6 163 69.3
BcaC04g21104 Brassica carinata HOM05D007759 ORTHO05D008318 2.0e-57 226.1 163 69.9
C01p11620 Brassica napus HOM05D007759 ORTHO05D008318 7.4e-57 224.2 163 70.6
A07p09660 Brassica napus HOM05D007759 ORTHO05D008318 1.3e-56 223.4 163 67.5
A03p64890 Brassica napus HOM05D007759 ORTHO05D008318 1.1e-55 220.3 163 66.3
BraA02t06461Z Brassica rapa HOM05D007759 ORTHO05D008318 7.0e-55 217.6 163 65.0
A05p45000 Brassica napus HOM05D007759 ORTHO05D008318 1.5e-54 216.5 163 64.4
A05p25410 Brassica napus HOM05D007759 ORTHO05D008318 3.5e-54 215.3 163 63.8
BcaNung02441 Brassica carinata HOM05D007759 ORTHO05D008318 5.9e-54 214.5 158 65.2
BcaC04g19163 Brassica carinata HOM05D007759 ORTHO05D008318 5.0e-53 211.5 126 84.9
C09p64240 Brassica napus HOM05D007759 ORTHO05D008318 5.0e-53 211.5 126 84.9
BolC9t59261H Brassica oleracea HOM05D007759 ORTHO05D008318 5.0e-53 211.5 126 84.9
A09p61940 Brassica napus HOM05D007759 ORTHO05D008318 1.5e-52 209.9 163 63.2
BcaC09g50938 Brassica carinata HOM05D007759 ORTHO05D008318 5.2e-50 201.4 163 65.0
BraA03t13280Z Brassica rapa HOM05D007759 ORTHO05D008318 1.3e-48 196.8 145 64.1
A07p18500 Brassica napus HOM05D007759 ORTHO05D008318 1.7e-48 196.4 163 58.9
BraA05t20148Z Brassica rapa HOM05D007759 ORTHO05D008318 3.1e-47 192.2 145 63.4
A09p55860 Brassica napus HOM05D007759 ORTHO05D008318 7.0e-47 191.0 124 76.6
BraA09t40989Z Brassica rapa HOM05D007759 ORTHO05D008318 7.0e-47 191.0 124 76.6
A09p15820 Brassica napus HOM05D007759 ORTHO05D008318 1.2e-46 190.3 163 58.3
BcaC01g00595 Brassica carinata HOM05D007759 ORTHO05D008318 2.0e-46 189.5 145 66.9
BcaC03g17946 Brassica carinata HOM05D007759 ORTHO05D008318 5.9e-46 188.0 163 56.4
BcaC08g46655 Brassica carinata HOM05D007759 ORTHO05D008318 5.9e-46 188.0 163 57.1
BcaC08g43908 Brassica carinata HOM05D007759 ORTHO05D008318 1.3e-45 186.8 126 75.4
C06p12950 Brassica napus HOM05D007759 ORTHO05D008318 1.3e-45 186.8 126 75.4
A05p26180 Brassica napus HOM05D007759 ORTHO05D008318 2.2e-45 186.0 163 55.8
A09p16180 Brassica napus HOM05D000305 ORTHO05D000065 2.9e-45 185.7 163 57.1
A07p25500 Brassica napus HOM05D007759 ORTHO05D008318 3.8e-45 185.3 163 56.4
C02p60070 Brassica napus HOM05D000305 ORTHO05D000065 6.5e-45 184.5 163 55.2
BolC6t39668H Brassica oleracea HOM05D000305 ORTHO05D000065 6.5e-45 184.5 163 56.4
BolC6t39089H Brassica oleracea HOM05D007759 ORTHO05D008318 8.5e-45 184.1 125 74.4
BcaC05g25628 Brassica carinata HOM05D007011 ORTHO05D008837 1.1e-44 183.7 163 56.4
BraA09t37253Z Brassica rapa HOM05D000305 ORTHO05D000065 1.1e-44 183.7 163 56.4
A04p16590 Brassica napus HOM05D007759 ORTHO05D008318 9.4e-44 180.6 163 55.8
BraA05t23159Z Brassica rapa HOM05D007759 ORTHO05D008318 1.6e-43 179.9 141 59.6
C05p39710 Brassica napus HOM05D007759 ORTHO05D008318 2.7e-43 179.1 93 93.5
C09p35650 Brassica napus HOM05D007759 ORTHO05D008318 3.6e-43 178.7 133 69.9
BolC9t56401H Brassica oleracea HOM05D007759 ORTHO05D008318 3.6e-43 178.7 133 69.9
C03p87080 Brassica napus HOM05D007759 ORTHO05D008318 1.7e-40 169.9 119 75.6
C01p16160 Brassica napus HOM05D007759 ORTHO05D008318 3.1e-39 165.6 104 81.7
BcaC01g02224 Brassica carinata HOM05D007759 ORTHO05D008318 7.0e-39 164.5 144 56.9
C03p67680 Brassica napus HOM05D007759 ORTHO05D008318 7.0e-39 164.5 144 56.9
BolSC21t60227H Brassica oleracea HOM05D007759 ORTHO05D008318 1.2e-38 163.7 144 56.9
BraA06t24735Z Brassica rapa HOM05D007759 ORTHO05D008318 2.2e-37 159.5 126 65.9
BcaB06g26374 Brassica carinata HOM05D007759 ORTHO05D008318 6.5e-37 157.9 113 71.7
BolC1t01835H Brassica oleracea HOM05D007759 ORTHO05D008318 1.1e-36 157.1 108 73.1
BcaB01g03487 Brassica carinata HOM05D007759 ORTHO05D008318 1.5e-36 156.8 126 65.1
BraA03t15551Z Brassica rapa HOM05D007759 ORTHO05D008318 1.9e-36 156.4 126 64.3
BcaB03g12128 Brassica carinata HOM05D007759 ORTHO05D008318 4.2e-36 155.2 126 64.3
BolC5t31112H Brassica oleracea HOM05D007759 ORTHO05D008318 1.2e-33 147.1 101 72.3
BolC3t21010H Brassica oleracea HOM05D007759 ORTHO05D008318 4.8e-32 141.7 101 73.3
BcaB06g27974 Brassica carinata HOM05D000305 ORTHO05D000065 1.8e-31 139.8 111 63.1
BcaC04g21617 Brassica carinata HOM05D007759 ORTHO05D008318 1.6e-30 136.7 106 65.1
BcaC09g51523 Brassica carinata HOM05D007759 ORTHO05D008318 9.5e-28 127.5 158 41.8
A08p07380 Brassica napus HOM05D000305 ORTHO05D008318 1.0e-26 124.0 158 42.4
BraA08t32755Z Brassica rapa HOM05D007759 ORTHO05D008318 1.0e-26 124.0 158 42.4
C01p16170 Brassica napus HOM05D007759 ORTHO05D008318 6.8e-26 121.3 101 67.3
C05p36840 Brassica napus HOM05D000305 ORTHO05D008318 2.6e-25 119.4 158 39.9
BcaC05g27701 Brassica carinata HOM05D007759 ORTHO05D008318 5.7e-25 118.2 158 39.9
BcaB02g07732 Brassica carinata HOM05D007759 ORTHO05D008318 7.5e-25 117.9 158 37.3
BolC5t32424H Brassica oleracea HOM05D000305 ORTHO05D008318 2.7e-22 109.4 160 38.8
BolC4t24039H Brassica oleracea HOM05D007759 ORTHO05D008318 5.0e-21 105.1 64 81.2
BcaC01g00980 Brassica carinata HOM05D007759 ORTHO05D008318 3.3e-20 102.4 57 87.7
BcaC09g50078 Brassica carinata HOM05D000305 ORTHO05D000065 1.4e-18 97.1 158 34.8
Thhalv10002215m.g Eutrema salsugineum HOM05D007759 ORTHO05D008318 5.2e-18 95.1 157 33.1
BcaNung04086 Brassica carinata HOM05D007759 ORTHO05D008318 1.2e-17 94.0 70 67.1
BolC6t37317H Brassica oleracea HOM05D007759 ORTHO05D008318 2.6e-17 92.8 158 34.8
C08p12830 Brassica napus HOM05D007759 ORTHO05D008318 1.3e-16 90.5 123 43.9
A06p29370 Brassica napus HOM05D007759 ORTHO05D008318 1.7e-16 90.1 74 62.2
A08p19220 Brassica napus HOM05D007759 ORTHO05D008318 3.2e-15 85.9 64 68.8
BraA08t33884Z Brassica rapa HOM05D007759 ORTHO05D008318 3.2e-15 85.9 64 68.8
BraA03t15217Z Brassica rapa HOM05D009716 ORTHO05D008318 1.2e-14 84.0 136 27.2
Carub.0001s4072 Capsella rubella HOM05D007759 ORTHO05D008318 2.7e-14 82.8 162 29.6
BcaB07g32952 Brassica carinata HOM05D007759 ORTHO05D008318 4.6e-14 82.0 56 75.0
BolC8t48618H Brassica oleracea HOM05D009716 ORTHO05D008318 6.0e-14 81.6 129 28.7
BraA04t15920Z Brassica rapa HOM05D009716 ORTHO05D008318 2.3e-13 79.7 124 28.2
BolC7t43125H Brassica oleracea HOM05D009716 ORTHO05D008318 3.9e-13 79.0 124 29.0
A05p10430 Brassica napus HOM05D007759 ORTHO05D008318 8.6e-13 77.8 64 60.9
Carub.0003s3131 Capsella rubella HOM05D007759 ORTHO05D008318 1.1e-12 77.4 162 29.0
BcaB06g26970 Brassica carinata HOM05D007759 ORTHO05D008318 4.3e-12 75.5 84 41.7
AL4G17992 Arabidopsis lyrata HOM05D007759 ORTHO05D008318 2.1e-11 73.2 89 41.6
C08p08060 Brassica napus HOM05D000313 ORTHO05D000065 3.6e-11 72.4 125 33.6
BolC8t47656H Brassica oleracea HOM05D000096 ORTHO05D000045 3.6e-11 72.4 125 33.6
A09p01240 Brassica napus HOM05D007759 ORTHO05D008318 2.3e-10 69.7 57 59.6
PSO478G1138 Papaver somniferum HOM05D000082 ORTHO05D003202 9.8e-09 64.3 51 45.1
BolC1t02876H Brassica oleracea HOM05D000305 ORTHO05D000065 3.7e-08 62.4 158 29.1
PSO782G5266 Papaver somniferum HOM05D000082 ORTHO05D003202 4.9e-08 62.0 51 43.1
BolC8t46859H Brassica oleracea HOM05D009716 ORTHO05D008318 8.3e-08 61.2 85 29.4
ATR0665G404 Amborella trichopoda HOM05D000082 ORTHO05D003202 1.1e-07 60.8 62 38.7
C01p29370 Brassica napus HOM05D000305 ORTHO05D000065 4.1e-07 58.9 158 28.5
BolC1t02858H Brassica oleracea HOM05D007759 ORTHO05D008318 5.4e-07 58.5 158 28.5
MD01G1066500 Malus domestica HOM05D000990 ORTHO05D000810 9.2e-07 57.8 114 32.5
RcHm_v2.0_Chr1g0356711 Rosa chinensis HOM05D000990 ORTHO05D000810 9.2e-07 57.8 118 33.1
Oeu000191.1 Olea europaea HOM05D000082 ORTHO05D000038 1.2e-06 57.4 48 47.9
Rhsim12G0163600 Rhododendron simsii HOM05D000157 ORTHO05D001065 1.2e-06 57.4 80 36.2
THA.LOC104812152 Tarenaya hassleriana HOM05D000187 ORTHO05D000230 1.2e-06 57.4 60 36.7
THA.LOC104817919 Tarenaya hassleriana HOM05D000990 ORTHO05D000810 1.2e-06 57.4 88 28.4
AT5G41350 Arabidopsis thaliana HOM05D000990 ORTHO05D000810 1.6e-06 57.0 130 27.7
Lalb_Chr10g0096811 Lupinus albus HOM05D000990 ORTHO05D000810 1.6e-06 57.0 54 38.9
MD07G1134100 Malus domestica HOM05D000990 ORTHO05D000810 1.6e-06 57.0 159 28.9
Nitab4.5_0029176g0010 Nicotiana tabacum HOM05D010101 ORTHO05D011325 1.6e-06 57.0 46 45.7
Solyc01g016410.4 Solanum lycopersicum HOM05D000082 ORTHO05D000038 1.6e-06 57.0 51 43.1
Sopen01g012080 Solanum pennellii HOM05D000082 ORTHO05D000038 1.6e-06 57.0 51 43.1
Ah.11g045140 Amaranthus hybridus HOM05D000187 ORTHO05D000230 2.1e-06 56.6 52 42.3
Glyma.05G209600 Glycine max HOM05D000990 ORTHO05D000810 2.1e-06 56.6 63 38.1
HanXRQChr05g0133931 Helianthus annuus HOM05D000187 ORTHO05D000230 2.1e-06 56.6 71 38.0
THA.LOC104823591 Tarenaya hassleriana HOM05D000990 ORTHO05D000810 2.1e-06 56.6 49 42.9
Actinidia20890 Actinidia chinensis HOM05D000990 ORTHO05D000810 2.7e-06 56.2 121 32.2
Aa31LG9G580 Aethionema arabicum HOM05D000990 ORTHO05D000810 2.7e-06 56.2 114 30.7
arahy.Tifrunner.gnm1.ann1.U48FM1 Arachis hypogaea HOM05D000990 ORTHO05D000810 2.7e-06 56.2 59 40.7
PGSC0003DMG400018972 Solanum tuberosum HOM05D000082 ORTHO05D000038 2.7e-06 56.2 50 44.0
Atru.chr11.1587 Acer truncatum HOM05D000990 ORTHO05D000810 3.5e-06 55.8 47 40.4
arahy.Tifrunner.gnm1.ann1.CDI7P2 Arachis hypogaea HOM05D000990 ORTHO05D000810 3.5e-06 55.8 57 36.8
arahy.Tifrunner.gnm1.ann1.GVR1A9 Arachis hypogaea HOM05D000990 ORTHO05D000810 3.5e-06 55.8 57 36.8
Dinv27337 Davidia involucrata HOM05D000082 ORTHO05D000038 3.5e-06 55.8 54 42.6
Glyma.18G235300 Glycine max HOM05D000990 ORTHO05D000810 3.5e-06 55.8 47 42.6
Gohir.D07G147100 Gossypium hirsutum HOM05D000990 ORTHO05D000810 3.5e-06 55.8 47 44.7
Gorai.001G159800 Gossypium raimondii HOM05D000990 ORTHO05D000810 3.5e-06 55.8 47 44.7
MBI19_g25009_MAGBIO Magnolia biondii HOM05D002438 ORTHO05D002617 3.5e-06 55.8 86 32.6
Nitab4.5_0001703g0020 Nicotiana tabacum HOM05D010101 ORTHO05D011325 3.5e-06 55.8 46 43.5
Ah.01g005470 Amaranthus hybridus HOM05D010671 ORTHO05D013417 4.6e-06 55.5 54 38.9
Ciclev10020585m.g Citrus clementina HOM05D004077 ORTHO05D004872 4.6e-06 55.5 80 32.5
HanXRQChr08g0224571 Helianthus annuus HOM05D000187 ORTHO05D000230 4.6e-06 55.5 120 30.0
HanXRQChr08g0225071 Helianthus annuus HOM05D000187 ORTHO05D000230 4.6e-06 55.5 120 30.0
Lalb_Chr16g0387321 Lupinus albus HOM05D000187 ORTHO05D000230 4.6e-06 55.5 47 48.9
MBI10_g10241_MAGBIO Magnolia biondii HOM05D004077 ORTHO05D004872 4.6e-06 55.5 80 32.5
Sopen12g028820 Solanum pennellii HOM05D000187 ORTHO05D000230 4.6e-06 55.5 52 40.4
TPR.G37735 Trifolium pratense HOM05D000990 ORTHO05D000810 4.6e-06 55.5 54 38.9
TAR371G1277 Trochodendron aralioides HOM05D004077 ORTHO05D004872 4.6e-06 55.5 80 32.5
TAR629G0666 Trochodendron aralioides HOM05D004077 ORTHO05D004872 4.6e-06 55.5 80 32.5
GSVIVG01027002001 Vitis vinifera HOM05D000990 ORTHO05D000810 4.6e-06 55.5 101 34.7
AL7G48080 Arabidopsis lyrata HOM05D000990 ORTHO05D000810 6.0e-06 55.1 124 28.2
CDE04G2457 Ceratophyllum demersum HOM05D005049 ORTHO05D004872 6.0e-06 55.1 80 32.5
Ca_00082_v3 Cicer arietinum L. HOM05D000082 ORTHO05D000038 6.0e-06 55.1 53 45.3
Migut.N01453 Erythranthe guttata HOM05D000990 ORTHO05D000810 6.0e-06 55.1 76 30.3
Glyma.09G257100 Glycine max HOM05D000990 ORTHO05D000810 6.0e-06 55.1 47 40.4
Glyma.17G090200 Glycine max HOM05D004077 ORTHO05D004872 6.0e-06 55.1 80 31.2
HanXRQChr08g0224121 Helianthus annuus HOM05D000187 ORTHO05D000230 6.0e-06 55.1 120 30.0
Lj2C677T8 Lonicera japonica HOM05D000082 ORTHO05D000038 6.0e-06 55.1 48 47.9
Lj4g0024779 Lotus japonicus HOM05D000187 ORTHO05D000230 6.0e-06 55.1 52 44.2
Peaxi162Scf00021g00046 Petunia axillaris HOM05D011230 ORTHO05D013017 6.0e-06 55.1 127 28.3
Phvul.002G291400 Phaseolus vulgaris HOM05D000990 ORTHO05D000810 6.0e-06 55.1 63 36.5
Psat1g224440 Pisum sativum HOM05D000082 ORTHO05D000038 6.0e-06 55.1 48 47.9
Potri.014G087000 Populus trichocarpa HOM05D000990 ORTHO05D000810 6.0e-06 55.1 53 43.4
Sabra11G0045000 Salix brachista HOM05D000157 ORTHO05D000311 6.0e-06 55.1 94 34.0
Sabra14G0063100 Salix brachista HOM05D000990 ORTHO05D000810 6.0e-06 55.1 47 42.6
Thecc.06G015400 Theobroma cacao HOM05D000082 ORTHO05D014197 6.0e-06 55.1 59 37.3
Thecc.06G015500 Theobroma cacao HOM05D000082 ORTHO05D014197 6.0e-06 55.1 59 37.3
Ah.11g051660 Amaranthus hybridus HOM05D004077 ORTHO05D004872 7.8e-06 54.7 80 32.5
ATR0193G022 Amborella trichopoda HOM05D000082 ORTHO05D000038 7.8e-06 54.7 80 31.2
CSS0033784 Camellia sinensis var. sinensis HOM05D000082 ORTHO05D000038 7.8e-06 54.7 48 43.8
Glyma.08G016300 Glycine max HOM05D000990 ORTHO05D000810 7.8e-06 54.7 63 36.5
HanXRQChr08g0224151 Helianthus annuus HOM05D000187 ORTHO05D000230 7.8e-06 54.7 119 27.7
Nn3g16881 Nelumbo nucifera HOM05D004077 ORTHO05D004872 7.8e-06 54.7 80 32.5
Nn7g36593 Nelumbo nucifera HOM05D000187 ORTHO05D000230 7.8e-06 54.7 60 38.3
Os05g0145000 Oryza sativa ssp. japonica HOM05D004077 ORTHO05D004872 7.8e-06 54.7 80 32.5
Rhsim08G0130200 Rhododendron simsii HOM05D000187 ORTHO05D000230 7.8e-06 54.7 63 34.9
Hund09430 Selenicereus undatus HOM05D006935 ORTHO05D004872 7.8e-06 54.7 80 32.5
Sc03g0007630 Simmondsia chinensis HOM05D000082 ORTHO05D000038 7.8e-06 54.7 46 47.8
VMungo0251G0478 Vigna mungo HOM05D000990 ORTHO05D000810 7.8e-06 54.7 63 36.5
Zm00001eb259210 Zea mays HOM05D000990 ORTHO05D000810 7.8e-06 54.7 59 39.0


User provided reference genes

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