Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g27926 Brassica carinata HOM05D003649 ORTHO05D004498 2.5e-167 592.0 300 100.0
BcaC06g35364 Brassica carinata HOM05D003649 ORTHO05D004498 1.1e-74 284.3 331 57.1
A07p11220 Brassica napus HOM05D003649 ORTHO05D004498 2.1e-73 280.0 332 57.8
A07p08470 Brassica napus HOM05D003649 ORTHO05D004498 1.5e-71 273.9 330 57.0
BraA07t28915Z Brassica rapa HOM05D003649 ORTHO05D004498 3.4e-71 272.7 323 57.3
C07p16930 Brassica napus HOM05D003649 ORTHO05D004498 1.7e-70 270.4 352 53.7
BolC7t42199H Brassica oleracea HOM05D003649 ORTHO05D004498 2.4e-69 266.5 345 53.9
BcaC06g35591 Brassica carinata HOM05D003649 ORTHO05D004498 4.0e-64 249.2 296 56.8
C07p13190 Brassica napus HOM05D003649 ORTHO05D004498 4.0e-64 249.2 296 56.8
BolC7t41812H Brassica oleracea HOM05D003649 ORTHO05D004498 4.0e-64 249.2 296 56.8
Thhalv10028678m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 1.4e-53 214.2 311 46.9
C09p35530 Brassica napus HOM05D003649 ORTHO05D004498 1.9e-26 124.0 157 52.2
Cfa011266 Carpinus fangiana HOM05D003649 ORTHO05D004498 5.8e-23 112.5 310 32.3
GSVIVG01038352001 Vitis vinifera HOM05D003649 ORTHO05D004498 1.7e-22 110.9 303 30.7
GSVIVG01011050001 Vitis vinifera HOM05D003649 ORTHO05D004498 3.8e-22 109.8 302 31.1
Psat2g144640 Pisum sativum HOM05D003649 ORTHO05D004498 8.4e-22 108.6 303 31.7
AUR62036018 Chenopodium quinoa HOM05D003649 ORTHO05D004498 1.4e-21 107.8 303 34.0
Ca_25060_v3 Cicer arietinum L. HOM05D003649 ORTHO05D004498 2.4e-21 107.1 305 31.5
Sed0023018 Sechium edule HOM05D003649 ORTHO05D004498 3.2e-21 106.7 307 31.9
VMungo1127G0750 Vigna mungo HOM05D003649 ORTHO05D004498 5.4e-21 105.9 309 30.1
Peaxi162Scf00111g00723 Petunia axillaris HOM05D003649 ORTHO05D004498 1.2e-20 104.8 282 31.6
TWI38G0227 Tripterygium wilfordii HOM05D003649 ORTHO05D004498 1.2e-20 104.8 307 31.3
TPR.G34458 Trifolium pratense HOM05D003649 ORTHO05D004498 1.6e-20 104.4 324 29.6
Duzib168G1903 Durio zibethinus HOM05D003649 ORTHO05D004498 2.1e-20 104.0 305 30.8
Gohir.A07G112700 Gossypium hirsutum HOM05D003649 ORTHO05D004498 2.1e-20 104.0 304 31.9
FAN16G3269 Fragaria x ananassa HOM05D003649 ORTHO05D004498 2.7e-20 103.6 166 39.2
FAN21G1332 Fragaria x ananassa HOM05D003649 ORTHO05D004498 2.7e-20 103.6 166 39.2
FAN21G3990 Fragaria x ananassa HOM05D003649 ORTHO05D004498 2.7e-20 103.6 166 39.2
FAN25G2823 Fragaria x ananassa HOM05D003649 ORTHO05D004498 2.7e-20 103.6 166 39.2
COL.COLO4_24336 Corchorus olitorius HOM05D003649 ORTHO05D004498 4.6e-20 102.8 282 30.9
CsaV3_7G025330 Cucumis sativus L. HOM05D003649 ORTHO05D004498 4.6e-20 102.8 307 31.3
FvH4_3g16580 Fragaria vesca HOM05D003649 ORTHO05D004498 4.6e-20 102.8 166 39.2
Sc26g0001160 Simmondsia chinensis HOM05D003649 ORTHO05D004498 6.0e-20 102.4 311 31.2
BcaB03g13795 Brassica carinata HOM05D003649 ORTHO05D004498 7.8e-20 102.1 311 31.5
Glyma.03G190900 Glycine max HOM05D003649 ORTHO05D004498 7.8e-20 102.1 166 39.2
MD05G1209000 Malus domestica HOM05D003649 ORTHO05D004498 7.8e-20 102.1 321 30.5
RcHm_v2.0_Chr5g0027651 Rosa chinensis HOM05D003649 ORTHO05D004498 7.8e-20 102.1 166 38.6
Sabra11G0099700 Salix brachista HOM05D003649 ORTHO05D004498 7.8e-20 102.1 308 29.9
MELO3C024126.2 Cucumis melo HOM05D003649 ORTHO05D004498 1.0e-19 101.7 303 31.0
Nn7g38381 Nelumbo nucifera HOM05D003649 ORTHO05D004498 1.3e-19 101.3 304 32.6
Potri.011G112500 Populus trichocarpa HOM05D003649 ORTHO05D004498 1.3e-19 101.3 308 30.2
Ah.13g074570 Amaranthus hybridus HOM05D003649 ORTHO05D004498 1.7e-19 100.9 304 32.2
ATR1132G059 Amborella trichopoda HOM05D003649 ORTHO05D004498 1.7e-19 100.9 304 29.9
SGA_v2.0_scaffold73G24356 Striga asiatica HOM05D003649 ORTHO05D004498 1.7e-19 100.9 312 31.1
AUR62035508 Chenopodium quinoa HOM05D003649 ORTHO05D004498 3.0e-19 100.1 283 32.2
FAN11G3158 Fragaria x ananassa HOM05D003649 ORTHO05D004498 3.0e-19 100.1 166 39.2
CANSAT01G2347 Cannabis sativa HOM05D003649 ORTHO05D004498 3.9e-19 99.8 167 37.7
CiPaw.08G013900 Carya illinoinensis HOM05D003649 ORTHO05D004498 3.9e-19 99.8 315 30.5
Medtr5g025980 Medicago truncatula HOM05D003649 ORTHO05D004498 3.9e-19 99.8 291 28.9
Ah.13g066610 Amaranthus hybridus HOM05D003649 ORTHO05D004498 6.6e-19 99.0 300 30.3
BraA07t28555Z Brassica rapa HOM05D026784 ORTHO05D027400 6.6e-19 99.0 79 72.2
Cpa.g.sc54.5 Carica papaya HOM05D003649 ORTHO05D004498 6.6e-19 99.0 267 32.2
unitig_748.g7599 Utricularia gibba HOM05D003649 ORTHO05D004498 6.6e-19 99.0 303 33.3
Potri.001G394000 Populus trichocarpa HOM05D003649 ORTHO05D004498 8.7e-19 98.6 305 29.8
Glyma.05G087100 Glycine max HOM05D003649 ORTHO05D004498 1.1e-18 98.2 166 38.6
Solyc07g056550.3 Solanum lycopersicum HOM05D003649 ORTHO05D004498 1.1e-18 98.2 278 30.6
Aqoxy1G02521 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 1.5e-18 97.8 306 31.0
ECA236G2713 Erigeron canadensis HOM05D003649 ORTHO05D004498 1.5e-18 97.8 316 32.6
HanXRQChr13g0424451 Helianthus annuus HOM05D003649 ORTHO05D004498 1.5e-18 97.8 306 31.7
MD10G1195400 Malus domestica HOM05D003649 ORTHO05D004498 1.5e-18 97.8 319 30.1
Phvul.004G052800 Phaseolus vulgaris HOM05D003649 ORTHO05D004498 1.5e-18 97.8 277 29.6
Prupe.4G148600 Prunus persica HOM05D003649 ORTHO05D004498 1.5e-18 97.8 322 29.8
A07p07630 Brassica napus HOM05D026784 ORTHO05D027400 1.9e-18 97.4 79 72.2
Hund24921 Selenicereus undatus HOM05D003649 ORTHO05D004498 1.9e-18 97.4 303 31.0
PGSC0003DMG400027653 Solanum tuberosum HOM05D003649 ORTHO05D004498 1.9e-18 97.4 278 30.2
Carub.0001s2998 Capsella rubella HOM05D003649 ORTHO05D004498 2.5e-18 97.1 313 30.4
Hma1.2p1_0505F.1_g168130 Hydrangea macrophylla HOM05D003649 ORTHO05D004498 2.5e-18 97.1 303 30.4
Lsat_1_v5_gn_5_148460 Lactuca sativa HOM05D003649 ORTHO05D004498 2.5e-18 97.1 313 31.0
QL02p065039 Quercus lobata HOM05D003649 ORTHO05D004498 2.5e-18 97.1 312 28.8
Sopen07g029910 Solanum pennellii HOM05D003649 ORTHO05D004498 2.5e-18 97.1 278 30.2
EL10Ac3g06484 Beta vulgaris HOM05D003649 ORTHO05D004498 3.3e-18 96.7 302 29.5
Gorai.001G124600 Gossypium raimondii HOM05D003649 ORTHO05D004498 3.3e-18 96.7 166 36.7
Rhsim09G0104200 Rhododendron simsii HOM05D003649 ORTHO05D004498 4.3e-18 96.3 303 29.7
Thhalv10007604m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 5.6e-18 95.9 314 29.9
Manes.14G152600 Manihot esculenta HOM05D003649 ORTHO05D004498 5.6e-18 95.9 166 38.6
Nitab4.5_0001924g0070 Nicotiana tabacum HOM05D003649 ORTHO05D004498 5.6e-18 95.9 307 30.6
Os09g0352400 Oryza sativa ssp. japonica HOM05D003649 ORTHO05D004498 5.6e-18 95.9 168 38.7
EL10Ac3g06580 Beta vulgaris HOM05D003649 ORTHO05D004498 7.3e-18 95.5 306 28.8
Manes.14G150400 Manihot esculenta HOM05D003649 ORTHO05D004498 7.3e-18 95.5 216 34.3
MSTRG.6707 Avicennia marina HOM05D003649 ORTHO05D004498 9.6e-18 95.1 311 30.5
ClCG09G009520 Citrullus lanatus HOM05D003649 ORTHO05D004498 9.6e-18 95.1 314 30.3
PSO675G2950 Papaver somniferum HOM05D003649 ORTHO05D004498 9.6e-18 95.1 168 37.5
CARHR286950 Cardamine hirsuta HOM05D003649 ORTHO05D004498 1.3e-17 94.7 311 31.2
PSO541G1065 Papaver somniferum HOM05D003649 ORTHO05D004498 1.3e-17 94.7 168 37.5
Rhsim09G0104400 Rhododendron simsii HOM05D003649 ORTHO05D004498 1.3e-17 94.7 307 30.3
Thecc.09G275100 Theobroma cacao HOM05D003649 ORTHO05D004498 1.3e-17 94.7 305 29.2
SalBow5G3252 Salvia bowleyana HOM05D003649 ORTHO05D004498 1.6e-17 94.4 316 30.4
Lj2g0021753 Lotus japonicus HOM05D003649 ORTHO05D004498 2.1e-17 94.0 278 30.2
Lalb_Chr21g0316901 Lupinus albus HOM05D003649 ORTHO05D004498 2.1e-17 94.0 268 30.6
vmacro10596 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 2.1e-17 94.0 303 29.4
BcaB07g32813 Brassica carinata HOM05D003649 ORTHO05D004498 2.8e-17 93.6 170 35.3
BolC7t41946H Brassica oleracea HOM05D003649 ORTHO05D004498 3.6e-17 93.2 170 35.9
A07p09400 Brassica napus HOM05D003649 ORTHO05D004498 4.8e-17 92.8 170 35.9
A09p34660 Brassica napus HOM05D003649 ORTHO05D004498 4.8e-17 92.8 309 29.4
C07p14470 Brassica napus HOM05D003649 ORTHO05D004498 4.8e-17 92.8 170 35.9
BraA07t28735Z Brassica rapa HOM05D003649 ORTHO05D004498 4.8e-17 92.8 170 35.9
Ciclev10023274m.g Citrus clementina HOM05D003649 ORTHO05D004498 6.2e-17 92.4 166 35.5
MBI17_g43195_MAGBIO Magnolia biondii HOM05D003649 ORTHO05D004498 6.2e-17 92.4 264 30.3
SalBow8G0566 Salvia bowleyana HOM05D003649 ORTHO05D004498 6.2e-17 92.4 313 30.0
Thecc.09G274600 Theobroma cacao HOM05D003649 ORTHO05D004498 6.2e-17 92.4 302 29.1
TPR.G9666 Trifolium pratense HOM05D003649 ORTHO05D004498 8.1e-17 92.0 177 35.6
AT1G31660 Arabidopsis thaliana HOM05D003649 ORTHO05D004498 1.1e-16 91.7 315 30.2
CSS0028028 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 1.1e-16 91.7 304 28.9
TAR627G1042 Trochodendron aralioides HOM05D003649 ORTHO05D004498 1.1e-16 91.7 306 30.4
arahy.Tifrunner.gnm1.ann1.956DWW Arachis hypogaea HOM05D003649 ORTHO05D004498 1.4e-16 91.3 166 35.5
arahy.Tifrunner.gnm1.ann1.V43L5Z Arachis hypogaea HOM05D003649 ORTHO05D004498 1.4e-16 91.3 169 35.5
CSS0018218 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 1.4e-16 91.3 304 28.9
CDE06G0350 Ceratophyllum demersum HOM05D003649 ORTHO05D004498 1.4e-16 91.3 251 32.3
PGR142G4312 Punica granatum HOM05D003649 ORTHO05D004498 1.4e-16 91.3 337 28.2
SalBow6G0551 Salvia bowleyana HOM05D003649 ORTHO05D004498 1.4e-16 91.3 313 29.7
Gohir.D07G116200 Gossypium hirsutum HOM05D003649 ORTHO05D004498 2.4e-16 90.5 290 28.3
Nitab4.5_0001864g0020 Nicotiana tabacum HOM05D003649 ORTHO05D004498 2.4e-16 90.5 263 30.0
Actinidia14919 Actinidia chinensis HOM05D003649 ORTHO05D004498 3.1e-16 90.1 303 28.4
Actinidia37054 Actinidia chinensis HOM05D003649 ORTHO05D004498 3.1e-16 90.1 303 28.4
Sp1g27340 Schrenkiella parvula HOM05D003649 ORTHO05D004498 3.1e-16 90.1 314 29.3
Atru.chr3.3291 Acer truncatum HOM05D003649 ORTHO05D004498 5.3e-16 89.4 306 28.8
Aa31LG2G14410 Aethionema arabicum HOM05D003649 ORTHO05D004498 5.3e-16 89.4 327 29.7
arahy.Tifrunner.gnm1.ann1.2990BW Arachis hypogaea HOM05D003649 ORTHO05D004498 5.3e-16 89.4 166 35.5
arahy.Tifrunner.gnm1.ann1.FP5V95 Arachis hypogaea HOM05D003649 ORTHO05D004498 5.3e-16 89.4 166 35.5
Oeu058434.1 Olea europaea HOM05D003649 ORTHO05D004498 5.3e-16 89.4 166 36.1
BraA09t39000Z Brassica rapa HOM05D003649 ORTHO05D004498 6.9e-16 89.0 170 34.7
COL.COLO4_22663 Corchorus olitorius HOM05D003649 ORTHO05D004498 6.9e-16 89.0 310 29.0
THA.LOC104814384 Tarenaya hassleriana HOM05D003649 ORTHO05D004498 6.9e-16 89.0 267 32.6
PSO339G1025 Papaver somniferum HOM05D003649 ORTHO05D004498 9.0e-16 88.6 304 29.6
Gohir.A09G098001 Gossypium hirsutum HOM05D003649 ORTHO05D004498 1.5e-15 87.8 166 34.3
PSO339G4670 Papaver somniferum HOM05D003649 ORTHO05D004498 1.5e-15 87.8 304 29.6
HPP92_001514 Vanilla planifolia HOM05D003649 ORTHO05D004498 1.5e-15 87.8 174 35.6
CANSAT80G0167 Cannabis sativa HOM05D003649 ORTHO05D004498 2.6e-15 87.0 166 34.9
DCAR_002270 Daucus carota HOM05D003649 ORTHO05D004498 2.6e-15 87.0 305 28.5
Pp3c14_4070 Physcomitrium patens HOM05D003649 ORTHO05D004498 2.6e-15 87.0 167 32.9
Mapoly0048s0058 Marchantia polymorpha HOM05D003649 ORTHO05D004498 3.4e-15 86.7 167 33.5
Cc05_g10190 Coffea canephora HOM05D003649 ORTHO05D004498 5.8e-15 85.9 255 30.2
SMO358G0130 Selaginella moellendorffii HOM05D003649 ORTHO05D004498 5.8e-15 85.9 166 34.9
Aqoxy5G01320 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 9.9e-15 85.1 225 31.1
Migut.J00669 Erythranthe guttata HOM05D003649 ORTHO05D004498 9.9e-15 85.1 304 28.9
Pp3c10_5710 Physcomitrium patens HOM05D003649 ORTHO05D004498 9.9e-15 85.1 167 32.9
Eucgr.F01411 Eucalyptus grandis HOM05D003649 ORTHO05D004498 2.2e-14 84.0 246 30.5
Migut.M00658 Erythranthe guttata HOM05D003649 ORTHO05D004498 3.8e-14 83.2 326 27.0
AagrBONN_evm.TU.Sc2ySwM_117.301 Anthoceros agrestis HOM05D003649 ORTHO05D004498 4.9e-14 82.8 176 35.2
CBR_g984 Chara braunii HOM05D003649 ORTHO05D004498 4.9e-14 82.8 257 26.8
MCO03G098 Micromonas commoda HOM05D003649 ORTHO05D004498 1.1e-13 81.6 213 28.2
Zm00001eb065940 Zea mays HOM05D003649 ORTHO05D004498 1.4e-13 81.3 302 30.1
Migut.M00659 Erythranthe guttata HOM05D003649 ORTHO05D004498 5.4e-13 79.3 319 26.6
Haze_02513 Corylus avellana HOM05D003649 ORTHO05D004498 7.9e-12 75.5 348 26.4
BolC5t31810H Brassica oleracea HOM05D003649 ORTHO05D004498 1.8e-11 74.3 154 33.1
BolC6t37476H Brassica oleracea HOM05D000901 ORTHO05D004766 2.3e-11 73.9 91 51.6
vmacro10597 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 5.1e-11 72.8 196 30.6
Cre01.g063267 Chlamydomonas reinhardtii HOM05D003649 ORTHO05D004498 3.3e-10 70.1 167 29.9
Haze_18856 Corylus avellana HOM05D003649 ORTHO05D004498 3.3e-10 70.1 370 24.1
BcaC05g27183 Brassica carinata HOM05D003649 ORTHO05D004498 4.3e-10 69.7 109 39.4
PRCOL_00003636 Prasinoderma coloniale HOM05D003649 ORTHO05D004498 2.1e-09 67.4 171 29.8
Lj1C808T9 Lonicera japonica HOM05D003649 ORTHO05D004498 8.1e-09 65.5 283 28.3
Cfa011268 Carpinus fangiana HOM05D007039 ORTHO05D008886 5.3e-08 62.8 211 29.4
BcaB01g03858 Brassica carinata HOM05D026784 ORTHO05D027400 2.6e-07 60.5 77 51.9
BcaB03g15158 Brassica carinata HOM05D026784 ORTHO05D027400 2.6e-07 60.5 72 51.4
RcHm_v2.0_Chr6g0291881 Rosa chinensis HOM05D003649 ORTHO05D004498 2.6e-07 60.5 164 30.5
CANSAT54G0397 Cannabis sativa HOM05D003649 ORTHO05D004498 3.4e-07 60.1 103 36.9
Actinidia13653 Actinidia chinensis HOM05D003649 ORTHO05D004498 1.3e-06 58.2 79 44.3
BraA07t28632Z Brassica rapa HOM05D003649 ORTHO05D004498 2.9e-06 57.0 32 87.5
BcaC04g21367 Brassica carinata HOM05D001554 ORTHO05D001481 8.4e-06 55.5 48 60.4
C09p32650 Brassica napus HOM05D003649 ORTHO05D004498 8.4e-06 55.5 48 60.4


User provided reference genes

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