Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g27871 Brassica carinata HOM05D006363 ORTHO05D007920 5.6e-46 187.2 90 100.0
C03p18470 Brassica napus HOM05D006363 ORTHO05D007920 7.3e-22 107.1 104 61.5
BraA03t10870Z Brassica rapa HOM05D006363 ORTHO05D007920 1.6e-21 105.9 104 60.6
BcaC01g06171 Brassica carinata HOM05D006363 ORTHO05D007920 4.7e-21 104.4 104 62.5
BolC3t14244H Brassica oleracea HOM05D006363 ORTHO05D007920 1.1e-20 103.2 104 58.7
A03p15800 Brassica napus HOM05D006363 ORTHO05D007920 2.4e-20 102.1 103 57.3
BcaB01g04190 Brassica carinata HOM05D006363 ORTHO05D007920 4.0e-20 101.3 104 61.5
Thhalv10015742m.g Eutrema salsugineum HOM05D006363 ORTHO05D007920 5.8e-19 97.4 103 60.2
A08p37210 Brassica napus HOM05D006363 ORTHO05D007920 1.4e-17 92.8 95 60.0
BolC5t32613H Brassica oleracea HOM05D006363 ORTHO05D007920 1.4e-17 92.8 54 85.2
C05p38730 Brassica napus HOM05D006363 ORTHO05D007920 5.4e-17 90.9 54 83.3
THA.LOC104811988 Tarenaya hassleriana HOM05D006363 ORTHO05D007920 2.1e-16 89.0 103 55.3
CARHR265110 Cardamine hirsuta HOM05D006363 ORTHO05D007920 6.0e-16 87.4 104 52.9
Carub.0008s1228 Capsella rubella HOM05D006363 ORTHO05D007920 1.0e-15 86.7 104 52.9
Sp6g14440 Schrenkiella parvula HOM05D006363 ORTHO05D007920 1.3e-15 86.3 105 56.2
AL8G26570 Arabidopsis lyrata HOM05D006363 ORTHO05D007920 4.3e-14 81.3 106 52.8
AT5G52190 Arabidopsis thaliana HOM05D006363 ORTHO05D007920 1.2e-13 79.7 106 50.0
PGR042G3170 Punica granatum HOM05D006363 ORTHO05D007920 4.7e-13 77.8 100 53.0
Cc03_g13850 Coffea canephora HOM05D006363 ORTHO05D007920 1.8e-12 75.9 104 50.0
TWI39G0139 Tripterygium wilfordii HOM05D006363 ORTHO05D007920 6.9e-12 73.9 104 47.1
Aa31LG3G8570 Aethionema arabicum HOM05D006363 ORTHO05D007920 1.2e-11 73.2 103 51.5
unitig_60.g25545 Utricularia gibba HOM05D006363 ORTHO05D007920 2.0e-11 72.4 104 50.0
MSTRG.8448 Avicennia marina HOM05D006363 ORTHO05D007920 2.6e-11 72.0 103 45.6
Nitab4.5_0001508g0030 Nicotiana tabacum HOM05D006363 ORTHO05D007920 2.6e-11 72.0 103 47.6
Ca_10782_v3 Cicer arietinum L. HOM05D006363 ORTHO05D007920 4.4e-11 71.2 103 47.6
BcaC06g36545 Brassica carinata HOM05D006363 ORTHO05D007920 5.8e-11 70.9 39 89.7
Solyc03g025990.1 Solanum lycopersicum HOM05D006363 ORTHO05D007920 5.8e-11 70.9 103 48.5
PGSC0003DMG400014325 Solanum tuberosum HOM05D006363 ORTHO05D007920 5.8e-11 70.9 103 46.6
BcaC01g06168 Brassica carinata HOM05D006363 ORTHO05D007920 7.6e-11 70.5 38 92.1
RcHm_v2.0_Chr1g0376991 Rosa chinensis HOM05D006363 ORTHO05D007920 7.6e-11 70.5 95 49.5
CSS0028509 Camellia sinensis var. sinensis HOM05D006363 ORTHO05D007920 9.9e-11 70.1 103 47.6
CiPaw.03G104700 Carya illinoinensis HOM05D006363 ORTHO05D007920 9.9e-11 70.1 103 47.6
Phvul.007G068100 Phaseolus vulgaris HOM05D006363 ORTHO05D007920 9.9e-11 70.1 103 47.6
Prupe.2G292400 Prunus persica HOM05D006363 ORTHO05D007920 9.9e-11 70.1 103 46.6
SalBow2G2214 Salvia bowleyana HOM05D006363 ORTHO05D007920 9.9e-11 70.1 95 47.4
Sopen03g004810 Solanum pennellii HOM05D006363 ORTHO05D007920 9.9e-11 70.1 103 47.6
Ciclev10007013m.g Citrus clementina HOM05D006363 ORTHO05D007920 1.3e-10 69.7 103 44.7
Nn6g34197 Nelumbo nucifera HOM05D006363 ORTHO05D007920 1.3e-10 69.7 107 44.9
TAR375G0304 Trochodendron aralioides HOM05D006363 ORTHO05D007920 1.3e-10 69.7 103 47.6
FAN10G0438 Fragaria x ananassa HOM05D006363 ORTHO05D007920 1.7e-10 69.3 95 49.5
MBI04_g04731_MAGBIO Magnolia biondii HOM05D006363 ORTHO05D007920 2.2e-10 68.9 105 42.9
Sabra15G0151200 Salix brachista HOM05D006363 ORTHO05D007920 2.9e-10 68.6 104 44.2
FAN03G1027 Fragaria x ananassa HOM05D006363 ORTHO05D007920 3.8e-10 68.2 95 48.4
FAN03G1282 Fragaria x ananassa HOM05D006363 ORTHO05D007920 3.8e-10 68.2 95 48.4
FAN06G3284 Fragaria x ananassa HOM05D006363 ORTHO05D007920 3.8e-10 68.2 95 48.4
FAN06G3928 Fragaria x ananassa HOM05D006363 ORTHO05D007920 3.8e-10 68.2 95 48.4
Glyma.20G157100 Glycine max HOM05D006363 ORTHO05D007920 3.8e-10 68.2 103 43.7
MD01G1199000 Malus domestica HOM05D006363 ORTHO05D007920 3.8e-10 68.2 104 45.2
Psat6g200600 Pisum sativum HOM05D006363 ORTHO05D007920 3.8e-10 68.2 103 48.5
VMungo0720G1872 Vigna mungo HOM05D006363 ORTHO05D007920 3.8e-10 68.2 103 46.6
Dinv28459 Davidia involucrata HOM05D006363 ORTHO05D007920 4.9e-10 67.8 109 45.9
GSVIVG01010552001 Vitis vinifera HOM05D006363 ORTHO05D007920 4.9e-10 67.8 104 45.2
MD07G1266800 Malus domestica HOM05D006363 ORTHO05D007920 6.4e-10 67.4 104 47.1
Migut.F01133 Erythranthe guttata HOM05D006363 ORTHO05D007920 8.4e-10 67.0 41 78.0
FvH4_7g29240 Fragaria vesca HOM05D006363 ORTHO05D007920 8.4e-10 67.0 95 47.4
Potri.015G140600 Populus trichocarpa HOM05D006363 ORTHO05D007920 8.4e-10 67.0 107 46.7
CAN.G947.11 Capsicum annuum HOM05D006363 ORTHO05D007920 1.1e-09 66.6 101 44.6
LjContig00238g0019616 Lotus japonicus HOM05D006363 ORTHO05D007920 1.1e-09 66.6 103 47.6
Rhsim09G0197500 Rhododendron simsii HOM05D006363 ORTHO05D007920 1.1e-09 66.6 103 46.6
CSS0002932 Camellia sinensis var. sinensis HOM05D006363 ORTHO05D007920 1.4e-09 66.2 90 50.0
Glyma.10G237500 Glycine max HOM05D006363 ORTHO05D007920 1.4e-09 66.2 104 44.2
Aqoxy7G00395 Aquilegia oxysepala HOM05D006363 ORTHO05D007920 1.9e-09 65.9 89 48.3
Lj8C25T12 Lonicera japonica HOM05D006363 ORTHO05D007920 1.9e-09 65.9 102 46.1
Medtr1g100753 Medicago truncatula HOM05D006363 ORTHO05D007920 1.9e-09 65.9 103 46.6
MELO3C006895.2 Cucumis melo HOM05D006363 ORTHO05D007920 2.4e-09 65.5 103 46.6
Peaxi162Scf00915g00018 Petunia axillaris HOM05D006363 ORTHO05D007920 2.4e-09 65.5 103 44.7
QL09p014582 Quercus lobata HOM05D006363 ORTHO05D007920 2.4e-09 65.5 103 45.6
Duzib205G1779 Durio zibethinus HOM05D006363 ORTHO05D007920 3.2e-09 65.1 103 43.7
Gohir.A12G258900 Gossypium hirsutum HOM05D006363 ORTHO05D007920 3.2e-09 65.1 101 42.6
Gohir.D12G260100 Gossypium hirsutum HOM05D006363 ORTHO05D007920 3.2e-09 65.1 92 47.8
Gorai.008G278600 Gossypium raimondii HOM05D006363 ORTHO05D007920 3.2e-09 65.1 92 47.8
Oeu062762.2 Olea europaea HOM05D006363 ORTHO05D007920 3.2e-09 65.1 105 45.7
Cfa008303 Carpinus fangiana HOM05D006363 ORTHO05D007920 4.2e-09 64.7 104 43.3
Haze_13734 Corylus avellana HOM05D006363 ORTHO05D007920 4.2e-09 64.7 106 46.2
Manes.07G111200 Manihot esculenta HOM05D006363 ORTHO05D007920 4.2e-09 64.7 104 45.2
Cpa.g.sc107.33 Carica papaya HOM05D006363 ORTHO05D007920 9.3e-09 63.5 103 43.7
CDE04G1845 Ceratophyllum demersum HOM05D006363 ORTHO05D007920 9.3e-09 63.5 41 75.6
HanXRQChr14g0462221 Helianthus annuus HOM05D006363 ORTHO05D007920 9.3e-09 63.5 103 42.7
Lsat_1_v5_gn_2_133820 Lactuca sativa HOM05D006363 ORTHO05D007920 1.2e-08 63.2 103 45.6
Nitab4.5_0000716g0210 Nicotiana tabacum HOM05D006363 ORTHO05D007920 1.2e-08 63.2 41 73.2
TPR.G14326 Trifolium pratense HOM05D006363 ORTHO05D007920 1.2e-08 63.2 103 44.7
AUR62016007 Chenopodium quinoa HOM05D006363 ORTHO05D007920 1.6e-08 62.8 103 43.7
CsaV3_3G016980 Cucumis sativus L. HOM05D006363 ORTHO05D007920 1.6e-08 62.8 103 44.7
vmacro09843 Vaccinium macrocarpon HOM05D006363 ORTHO05D007920 1.6e-08 62.8 103 44.7
Atru.chr1.482 Acer truncatum HOM05D006363 ORTHO05D007920 2.1e-08 62.4 102 47.1
HPP92_021110 Vanilla planifolia HOM05D006363 ORTHO05D007920 2.1e-08 62.4 90 46.7
ECA238G0548 Erigeron canadensis HOM05D006363 ORTHO05D007920 2.7e-08 62.0 41 73.2
PSO782G5704 Papaver somniferum HOM05D006363 ORTHO05D007920 2.7e-08 62.0 41 73.2
Sed0019375 Sechium edule HOM05D006363 ORTHO05D007920 2.7e-08 62.0 94 45.7
AUR62021214 Chenopodium quinoa HOM05D006363 ORTHO05D007920 3.5e-08 61.6 103 42.7
Thecc.03G174500 Theobroma cacao HOM05D006363 ORTHO05D007920 3.5e-08 61.6 103 42.7
COL.COLO4_14288 Corchorus olitorius HOM05D006363 ORTHO05D007920 4.6e-08 61.2 41 73.2
FAN01G1422 Fragaria x ananassa HOM05D006363 ORTHO05D007920 6.0e-08 60.8 41 73.2
SEGI_31787 Sequoiadendron giganteum HOM05D006363 ORTHO05D007920 6.0e-08 60.8 90 43.3
PSO478G1739 Papaver somniferum HOM05D006363 ORTHO05D007920 7.8e-08 60.5 98 43.9
Lalb_Chr02g0140961 Lupinus albus HOM05D006363 ORTHO05D007920 1.0e-07 60.1 41 70.7
ATR0757G111 Amborella trichopoda HOM05D006363 ORTHO05D007920 1.7e-07 59.3 88 43.2
CANSAT21G0627 Cannabis sativa HOM05D006363 ORTHO05D007920 3.9e-07 58.2 42 69.0
DCAR_018188 Daucus carota HOM05D006363 ORTHO05D007920 5.1e-07 57.8 101 38.6
Eucgr.A02801 Eucalyptus grandis HOM05D006363 ORTHO05D007920 5.1e-07 57.8 89 44.9
TAR291G0005 Trochodendron aralioides HOM05D006363 ORTHO05D007920 8.7e-07 57.0 33 78.8
TAR375G0495 Trochodendron aralioides HOM05D006363 ORTHO05D007920 8.7e-07 57.0 33 78.8
TAR624G1193 Trochodendron aralioides HOM05D006363 ORTHO05D007920 8.7e-07 57.0 33 78.8
Zm00001eb428810 Zea mays HOM05D006363 ORTHO05D007920 8.7e-07 57.0 95 41.1
Ah.13g075440 Amaranthus hybridus HOM05D006363 ORTHO05D007920 1.5e-06 56.2 103 41.7
CANSAT21G2254 Cannabis sativa HOM05D006363 ORTHO05D007920 1.9e-06 55.8 42 66.7
EL10Ac3g05667 Beta vulgaris HOM05D006363 ORTHO05D007920 2.5e-06 55.5 103 41.7
SMO367G0077 Selaginella moellendorffii HOM05D006363 ORTHO05D007920 2.5e-06 55.5 89 42.7
TAR633G0106 Trochodendron aralioides HOM05D006363 ORTHO05D007920 4.3e-06 54.7 33 75.8
Sc25g0000440 Simmondsia chinensis HOM05D006363 ORTHO05D007920 5.6e-06 54.3 92 41.3
TAR629G0450 Trochodendron aralioides HOM05D006363 ORTHO05D007920 7.3e-06 53.9 33 75.8
Pp3c6_24270 Physcomitrium patens HOM05D006363 ORTHO05D007920 9.6e-06 53.5 40 57.5


User provided reference genes

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