Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g27832 Brassica carinata HOM05D004742 ORTHO05D005677 6.6e-105 384.0 192 100.0
C05p38300 Brassica napus HOM05D004742 ORTHO05D005677 6.6e-105 384.0 192 100.0
BolC5t32562H Brassica oleracea HOM05D004742 ORTHO05D005677 6.6e-105 384.0 192 100.0
BcaC01g01725 Brassica carinata HOM05D004742 ORTHO05D005677 8.4e-100 367.1 191 94.2
C03p72460 Brassica napus HOM05D004742 ORTHO05D005677 8.4e-100 367.1 191 94.2
BolC3t19547H Brassica oleracea HOM05D004742 ORTHO05D005677 4.1e-99 364.8 191 93.7
BcaB03g13715 Brassica carinata HOM05D004742 ORTHO05D005677 9.0e-94 347.1 191 91.1
A05p24650 Brassica napus HOM05D004742 ORTHO05D005677 3.5e-90 335.1 191 89.0
BraA05t21351Z Brassica rapa HOM05D004742 ORTHO05D005677 3.5e-90 335.1 191 89.0
Thhalv10008795m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 8.7e-81 303.9 199 80.4
Sp1g28270 Schrenkiella parvula HOM05D004742 ORTHO05D005677 2.4e-78 295.8 199 76.9
CARHR032080 Cardamine hirsuta HOM05D004742 ORTHO05D005677 1.5e-77 293.1 199 78.4
AT1G32690 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 1.1e-67 260.4 201 71.6
AL1G46920 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 9.3e-67 257.3 203 70.4
Carub.0001s3103 Capsella rubella HOM05D004742 ORTHO05D005677 2.2e-60 236.1 204 67.6
Aa31LG2G13280 Aethionema arabicum HOM05D004742 ORTHO05D005677 4.5e-53 211.8 202 60.4
THA.LOC104814447 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 5.5e-51 204.9 214 59.3
Sp4g17420 Schrenkiella parvula HOM05D004742 ORTHO05D005677 8.2e-47 191.0 204 56.9
Aa31LG9G15210 Aethionema arabicum HOM05D004742 ORTHO05D005677 2.4e-46 189.5 199 59.8
THA.LOC104812742 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 3.8e-44 182.2 210 55.2
Thhalv10017262m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 2.7e-42 176.0 202 54.5
BcaC02g11593 Brassica carinata HOM05D004742 ORTHO05D005677 3.6e-42 175.6 194 51.5
C04p13600 Brassica napus HOM05D004742 ORTHO05D005677 1.4e-41 173.7 195 50.8
BolC4t22951H Brassica oleracea HOM05D004742 ORTHO05D005677 1.4e-41 173.7 195 50.8
A05p10550 Brassica napus HOM05D004742 ORTHO05D005677 2.4e-38 162.9 180 52.8
BraA05t19993Z Brassica rapa HOM05D004742 ORTHO05D005677 2.4e-38 162.9 180 52.8
Carub.0004s1689 Capsella rubella HOM05D004742 ORTHO05D005677 2.0e-37 159.8 202 50.0
AL4G31210 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 1.2e-34 150.6 199 49.7
Thecc.03G226400 Theobroma cacao HOM05D004742 ORTHO05D005677 2.1e-34 149.8 222 44.1
AT2G35200 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 3.3e-32 142.5 199 46.7
COL.COLO4_17015 Corchorus olitorius HOM05D004742 ORTHO05D005677 1.7e-31 140.2 219 45.2
CARHR129360 Cardamine hirsuta HOM05D004742 ORTHO05D005677 2.8e-31 139.4 199 44.7
Duzib205G0563 Durio zibethinus HOM05D004742 ORTHO05D005677 3.7e-31 139.0 222 43.2
TWI60G1233 Tripterygium wilfordii HOM05D004742 ORTHO05D005677 6.3e-31 138.3 224 42.4
Ca_06086_v3 Cicer arietinum L. HOM05D004742 ORTHO05D005677 4.1e-30 135.6 234 42.7
TPR.G1023 Trifolium pratense HOM05D004742 ORTHO05D005677 3.5e-29 132.5 225 42.7
Duzib084G1225 Durio zibethinus HOM05D004742 ORTHO05D005677 1.0e-28 131.0 222 39.2
Duzib084G0476 Durio zibethinus HOM05D004742 ORTHO05D005677 1.1e-27 127.5 222 38.7
Gohir.A08G156100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.9e-27 126.7 216 41.2
Gohir.A09G199100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.9e-27 126.7 226 39.4
Medtr5g030210 Medicago truncatula HOM05D004742 ORTHO05D005677 2.5e-27 126.3 234 41.5
Medtr5g430370 Medicago truncatula HOM05D004742 ORTHO05D005677 2.5e-27 126.3 234 41.5
Atru.chr6.1683 Acer truncatum HOM05D004742 ORTHO05D005677 1.6e-26 123.6 208 45.7
Gohir.D08G176700 Gossypium hirsutum HOM05D004742 ORTHO05D005677 2.7e-26 122.9 216 41.2
Gorai.004G184600 Gossypium raimondii HOM05D004742 ORTHO05D005677 2.7e-26 122.9 216 41.2
Sabra03G0062000 Salix brachista HOM05D004742 ORTHO05D001134 2.7e-26 122.9 218 40.8
Gohir.A11G030800 Gossypium hirsutum HOM05D004742 ORTHO05D005677 4.7e-26 122.1 219 39.7
QL12p005003 Quercus lobata HOM05D004742 ORTHO05D005677 4.7e-26 122.1 205 41.5
Glyma.01G017800 Glycine max HOM05D004742 ORTHO05D005677 1.0e-25 120.9 233 41.2
arahy.Tifrunner.gnm1.ann1.EZQY9P Arachis hypogaea HOM05D004742 ORTHO05D005677 1.8e-25 120.2 224 40.6
arahy.Tifrunner.gnm1.ann1.RMRK9P Arachis hypogaea HOM05D004742 ORTHO05D005677 1.8e-25 120.2 224 40.6
Gohir.D11G029500 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.8e-25 120.2 219 41.1
Glyma.09G205100 Glycine max HOM05D004742 ORTHO05D005677 2.3e-25 119.8 237 40.1
Lsat_1_v5_gn_3_18001 Lactuca sativa HOM05D004742 ORTHO05D005677 2.3e-25 119.8 231 38.1
Gorai.007G032300 Gossypium raimondii HOM05D004742 ORTHO05D005677 3.0e-25 119.4 219 40.6
Lalb_Chr09g0325611 Lupinus albus HOM05D004742 ORTHO05D005677 3.0e-25 119.4 226 38.9
Dinv25223 Davidia involucrata HOM05D004742 ORTHO05D005677 8.8e-25 117.9 219 38.4
Phvul.002G140700 Phaseolus vulgaris HOM05D004742 ORTHO05D005677 8.8e-25 117.9 228 39.0
VMungo1215G1913 Vigna mungo HOM05D004742 ORTHO05D005677 8.8e-25 117.9 228 40.4
Duzib068G0638 Durio zibethinus HOM05D004742 ORTHO05D005677 1.2e-24 117.5 215 38.6
Ciclev10016629m.g Citrus clementina HOM05D004742 ORTHO05D005677 1.5e-24 117.1 216 40.7
PGR031G2228 Punica granatum HOM05D004742 ORTHO05D005677 2.0e-24 116.7 244 38.5
CsaV3_3G001600 Cucumis sativus L. HOM05D004742 ORTHO05D005677 4.4e-24 115.5 224 40.6
CANSAT21G2184 Cannabis sativa HOM05D004742 ORTHO05D005677 5.7e-24 115.2 232 38.4
Gorai.006G216900 Gossypium raimondii HOM05D004742 ORTHO05D005677 7.5e-24 114.8 226 35.4
Manes.17G011300 Manihot esculenta HOM05D004742 ORTHO05D005677 1.3e-23 114.0 231 40.3
Lj2g0023551 Lotus japonicus HOM05D004742 ORTHO05D005677 2.2e-23 113.2 228 38.6
HanXRQChr17g0536221 Helianthus annuus HOM05D004742 ORTHO05D005677 2.8e-23 112.8 219 38.4
ClCG10G001520 Citrullus lanatus HOM05D004742 ORTHO05D005677 3.7e-23 112.5 229 38.9
MELO3C027362.2 Cucumis melo HOM05D004742 ORTHO05D005677 4.8e-23 112.1 223 41.3
Nn1g00114 Nelumbo nucifera HOM05D004742 ORTHO05D005677 4.8e-23 112.1 213 39.9
Gohir.D09G193400 Gossypium hirsutum HOM05D004742 ORTHO05D005677 6.3e-23 111.7 226 35.0
Potri.001G141600 Populus trichocarpa HOM05D004742 ORTHO05D005677 1.1e-22 110.9 227 36.1
Manes.15G188900 Manihot esculenta HOM05D004742 ORTHO05D005677 2.4e-22 109.8 229 40.2
CSS0042903 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 3.1e-22 109.4 216 35.6
Lj3A410T15 Lonicera japonica HOM05D004742 ORTHO05D005677 2.0e-21 106.7 197 40.1
Potri.003G092700 Populus trichocarpa HOM05D004742 ORTHO05D005677 4.5e-21 105.5 226 35.4
PGSC0003DMG400017538 Solanum tuberosum HOM05D004742 ORTHO05D005677 4.5e-21 105.5 237 37.1
CiPaw.12G064300 Carya illinoinensis HOM05D004742 ORTHO05D005677 7.7e-21 104.8 225 34.2
Ah.12g055130 Amaranthus hybridus HOM05D004742 ORTHO05D005677 1.3e-20 104.0 196 36.2
Hma1.2p1_0303F.1_g119030 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 1.3e-20 104.0 226 38.1
TAR374G0395 Trochodendron aralioides HOM05D004742 ORTHO05D005677 1.7e-20 103.6 204 38.2
EL10Ac5g12098 Beta vulgaris HOM05D004742 ORTHO05D005677 2.9e-20 102.8 195 40.5
Cfa012451 Carpinus fangiana HOM05D004742 ORTHO05D005677 6.6e-20 101.7 220 32.7
CiPaw.11G094200 Carya illinoinensis HOM05D004742 ORTHO05D005677 6.6e-20 101.7 229 36.7
Sopen08g025400 Solanum pennellii HOM05D004742 ORTHO05D005677 8.6e-20 101.3 240 36.2
Nitab4.5_0010403g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 1.9e-19 100.1 236 34.3
Actinidia14802 Actinidia chinensis HOM05D004742 ORTHO05D005677 2.5e-19 99.8 206 34.0
Solyc08g076870.1 Solanum lycopersicum HOM05D004742 ORTHO05D005677 5.5e-19 98.6 239 34.7
Actinidia03372 Actinidia chinensis HOM05D004742 ORTHO05D005677 7.2e-19 98.2 233 31.8
Psat2g136480 Pisum sativum HOM05D004742 ORTHO05D005677 7.2e-19 98.2 228 35.1
Prupe.5G034500 Prunus persica HOM05D004742 ORTHO05D005677 7.2e-19 98.2 241 37.8
CSS0044674 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 9.5e-19 97.8 206 35.4
MD16G1273500 Malus domestica HOM05D004742 ORTHO05D005677 1.2e-18 97.4 243 34.6
Lalb_Chr16g0381321 Lupinus albus HOM05D004742 ORTHO05D005677 1.6e-18 97.1 206 35.9
EL10Ac5g12097 Beta vulgaris HOM05D004742 ORTHO05D005677 4.7e-18 95.5 181 40.3
FvH4_5g22200 Fragaria vesca HOM05D004742 ORTHO05D005677 6.1e-18 95.1 235 33.6
FAN08G0406 Fragaria x ananassa HOM05D004742 ORTHO05D005677 8.0e-18 94.7 235 33.2
CSS0004262 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 1.0e-17 94.4 222 35.1
Lsat_1_v5_gn_6_421 Lactuca sativa HOM05D004742 ORTHO05D005677 1.0e-17 94.4 226 33.6
CSS0028083 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 1.4e-17 94.0 220 32.7
FAN18G2180 Fragaria x ananassa HOM05D004742 ORTHO05D005677 1.4e-17 94.0 235 35.7
FAN13G2654 Fragaria x ananassa HOM05D004742 ORTHO05D005677 1.8e-17 93.6 235 34.0
DCAR_032208 Daucus carota HOM05D004742 ORTHO05D005677 2.3e-17 93.2 203 33.0
MD06G1035300 Malus domestica HOM05D004742 ORTHO05D005677 2.3e-17 93.2 245 33.5
FAN04G2756 Fragaria x ananassa HOM05D004742 ORTHO05D005677 4.0e-17 92.4 235 33.6
Eucgr.D02205 Eucalyptus grandis HOM05D004742 ORTHO05D005677 5.2e-17 92.0 235 36.2
Nitab4.5_0000529g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 1.2e-16 90.9 228 33.3
Haze_08216 Corylus avellana HOM05D004742 ORTHO05D005677 1.5e-16 90.5 223 30.5
RcHm_v2.0_Chr7g0209881 Rosa chinensis HOM05D004742 ORTHO05D005677 7.5e-16 88.2 237 33.3
Oeu006253.1 Olea europaea HOM05D004742 ORTHO05D005677 9.8e-16 87.8 215 35.8
TAR629G2541 Trochodendron aralioides HOM05D004742 ORTHO05D005677 1.7e-15 87.0 167 38.3
Rhsim07G0128300 Rhododendron simsii HOM05D004742 ORTHO05D005677 2.2e-15 86.7 202 33.7
Migut.E00942 Erythranthe guttata HOM05D004742 ORTHO05D005677 2.8e-15 86.3 226 30.5
SalBow6G3311 Salvia bowleyana HOM05D004742 ORTHO05D005677 6.3e-15 85.1 229 30.1
HanXRQChr12g0360911 Helianthus annuus HOM05D004742 ORTHO05D005677 1.4e-14 84.0 224 32.1
TAR636G0473 Trochodendron aralioides HOM05D004742 ORTHO05D005677 1.4e-14 84.0 208 35.1
HanXRQChr06g0167541 Helianthus annuus HOM05D004742 ORTHO05D005677 7.0e-14 81.6 205 32.7
Rhsim11G0016100 Rhododendron simsii HOM05D004742 ORTHO05D005677 9.2e-14 81.3 191 35.6
Actinidia25968 Actinidia chinensis HOM05D004742 ORTHO05D005677 2.0e-13 80.1 238 31.1
SGA_v2.0_scaffold6G03142 Striga asiatica HOM05D004742 ORTHO05D005677 1.3e-12 77.4 187 34.8
MSTRG.12162 Avicennia marina HOM05D004742 ORTHO05D005677 2.9e-12 76.3 228 30.7
TAR375G0192 Trochodendron aralioides HOM05D004742 ORTHO05D005677 5.0e-12 75.5 133 39.8
HPP92_014611 Vanilla planifolia HOM05D004742 ORTHO05D005677 5.0e-12 75.5 204 34.3
Nitab4.5_0008566g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 8.6e-12 74.7 215 31.2
Aqoxy3G02336 Aquilegia oxysepala HOM05D004742 ORTHO05D005677 7.3e-11 71.6 233 30.5
DCAR_008263 Daucus carota HOM05D004742 ORTHO05D005677 9.5e-11 71.2 232 28.4
HPP92_020967 Vanilla planifolia HOM05D004742 ORTHO05D005677 9.5e-11 71.2 166 39.2
Hma1.2p1_0574F.1_g181490 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 2.8e-10 69.7 262 31.7
PSO210G7694 Papaver somniferum HOM05D004742 ORTHO05D005677 2.8e-10 69.7 128 37.5
ATR0665G540 Amborella trichopoda HOM05D004742 ORTHO05D005677 3.6e-10 69.3 91 46.2
MBI04_g46668_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 3.6e-10 69.3 184 33.7
Sed0001883 Sechium edule HOM05D004742 ORTHO05D005677 1.4e-09 67.4 223 32.3
DCAR_004297 Daucus carota HOM05D004742 ORTHO05D005677 4.0e-09 65.9 103 39.8
SGA_v2.0_scaffold20G09271 Striga asiatica HOM05D004742 ORTHO05D005677 4.0e-09 65.9 193 31.6
CDE06G1944 Ceratophyllum demersum HOM05D003296 ORTHO05D003720 5.2e-09 65.5 190 33.7
Cc08_g02870 Coffea canephora HOM05D004742 ORTHO05D005677 6.8e-09 65.1 103 40.8
MBI04_g25303_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 1.2e-08 64.3 187 32.6
Nitab4.5_0006434g0030 Nicotiana tabacum HOM05D004742 ORTHO05D005677 4.4e-08 62.4 124 34.7
AUR62018706 Chenopodium quinoa HOM05D004742 ORTHO05D005677 5.8e-08 62.0 196 29.1
CDE03G0209 Ceratophyllum demersum HOM05D004742 ORTHO05D005677 1.1e-06 57.8 151 33.8
CDE11G0293 Ceratophyllum demersum HOM05D004742 ORTHO05D005677 1.9e-06 57.0 98 40.8


User provided reference genes

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