Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g27802 Brassica carinata HOM05D006511 ORTHO05D007567 6.7e-129 464.2 255 100.0
C05p38000 Brassica napus HOM05D006511 ORTHO05D007567 1.0e-124 450.3 280 91.1
BolC5t32531H Brassica oleracea HOM05D006511 ORTHO05D007567 4.9e-124 448.0 280 90.7
BcaB03g13696 Brassica carinata HOM05D006511 ORTHO05D007567 6.1e-122 441.0 253 95.3
BraA05t21311Z Brassica rapa HOM05D006511 ORTHO05D007567 1.9e-120 436.0 268 91.4
AT1G33500 Arabidopsis thaliana HOM05D006511 ORTHO05D007567 4.3e-112 408.3 253 87.4
Sp1g28980 Schrenkiella parvula HOM05D006511 ORTHO05D007567 1.7e-111 406.4 253 87.7
Carub.0001s3169 Capsella rubella HOM05D006511 ORTHO05D007567 8.2e-111 404.1 253 87.0
CARHR032940 Cardamine hirsuta HOM05D006511 ORTHO05D007567 2.9e-108 395.6 255 84.3
Aa31LG6G7970 Aethionema arabicum HOM05D006511 ORTHO05D007567 4.7e-90 335.1 283 68.9
Thhalv10008295m.g Eutrema salsugineum HOM05D006511 ORTHO05D007567 1.8e-89 333.2 304 67.1
THA.LOC104815798 Tarenaya hassleriana HOM05D006511 ORTHO05D007567 5.9e-85 318.2 251 68.9
AL1G47890 Arabidopsis lyrata HOM05D006511 ORTHO05D007567 2.8e-71 272.7 173 85.5
Dinv22148 Davidia involucrata HOM05D006511 ORTHO05D007567 1.7e-63 246.9 278 52.5
FAN19G0686 Fragaria x ananassa HOM05D006511 ORTHO05D007567 2.9e-63 246.1 281 52.0
FvH4_2g00330 Fragaria vesca HOM05D006511 ORTHO05D007567 1.2e-61 240.7 281 49.8
QL09p001374 Quercus lobata HOM05D006511 ORTHO05D007567 1.2e-61 240.7 281 49.8
CSS0025861 Camellia sinensis var. sinensis HOM05D006511 ORTHO05D007567 2.7e-61 239.6 263 54.4
RcHm_v2.0_Chr6g0249621 Rosa chinensis HOM05D006511 ORTHO05D007567 4.6e-61 238.8 281 51.2
Actinidia29367 Actinidia chinensis HOM05D006511 ORTHO05D007567 1.0e-60 237.7 279 52.3
FAN24G0692 Fragaria x ananassa HOM05D006511 ORTHO05D007567 1.0e-60 237.7 281 49.5
HanXRQChr04g0102481 Helianthus annuus HOM05D006511 ORTHO05D007567 8.6e-60 234.6 260 51.2
CiPaw.03G012800 Carya illinoinensis HOM05D006511 ORTHO05D007567 1.2e-58 230.7 278 49.3
MD05G1006300 Malus domestica HOM05D006511 ORTHO05D007567 2.8e-58 229.6 270 50.4
Potri.013G095400 Populus trichocarpa HOM05D006511 ORTHO05D007567 6.2e-58 228.4 281 49.8
FAN20G0885 Fragaria x ananassa HOM05D006511 ORTHO05D007567 8.1e-58 228.0 289 48.1
TAR636G2957 Trochodendron aralioides HOM05D006511 ORTHO05D007567 5.2e-57 225.3 255 53.3
HanXRQChr04g0102471 Helianthus annuus HOM05D006511 ORTHO05D007567 1.5e-56 223.8 253 50.6
Manes.18G109250 Manihot esculenta HOM05D006511 ORTHO05D007567 2.6e-56 223.0 280 49.6
DCAR_014062 Daucus carota HOM05D006511 ORTHO05D007567 1.3e-55 220.7 282 48.9
TWI12G0802 Tripterygium wilfordii HOM05D006511 ORTHO05D007567 1.3e-55 220.7 261 50.2
Phvul.011G215700 Phaseolus vulgaris HOM05D006511 ORTHO05D007567 1.7e-55 220.3 282 47.2
Sabra13G0081400 Salix brachista HOM05D006511 ORTHO05D007567 1.9e-54 216.9 280 47.9
Prupe.8G003600 Prunus persica HOM05D006511 ORTHO05D007567 2.1e-53 213.4 269 48.3
Hund17299 Selenicereus undatus HOM05D006511 ORTHO05D007567 2.7e-53 213.0 271 44.6
Rhsim02G0172300 Rhododendron simsii HOM05D006511 ORTHO05D007567 1.7e-52 210.3 269 49.4
Sc01g0000050 Simmondsia chinensis HOM05D006511 ORTHO05D007567 1.7e-52 210.3 274 47.1
Lsat_1_v5_gn_1_24541 Lactuca sativa HOM05D006511 ORTHO05D007567 3.0e-52 209.5 278 47.5
Sed0008597 Sechium edule HOM05D006511 ORTHO05D007567 1.5e-51 207.2 287 44.3
Thecc.08G168400 Theobroma cacao HOM05D006511 ORTHO05D007567 1.5e-51 207.2 281 44.8
Psat7g227400 Pisum sativum HOM05D006511 ORTHO05D007567 2.5e-51 206.5 280 43.9
PSO384G4286 Papaver somniferum HOM05D006511 ORTHO05D007567 1.2e-50 204.1 273 44.3
Solyc11g045100.2 Solanum lycopersicum HOM05D006511 ORTHO05D007567 1.6e-50 203.8 265 46.0
CANSAT56G0749 Cannabis sativa HOM05D006511 ORTHO05D007567 3.6e-50 202.6 279 45.5
ECA247G1184 Erigeron canadensis HOM05D006511 ORTHO05D007567 1.1e-49 201.1 269 45.7
Sopen11g020540 Solanum pennellii HOM05D006511 ORTHO05D007567 1.4e-49 200.7 269 43.1
TPR.G34175 Trifolium pratense HOM05D006511 ORTHO05D007567 2.3e-49 199.9 287 43.2
arahy.Tifrunner.gnm1.ann1.HN79E8 Arachis hypogaea HOM05D006511 ORTHO05D007567 3.1e-49 199.5 332 39.2
SalBow7G4276 Salvia bowleyana HOM05D006511 ORTHO05D007567 5.2e-49 198.7 312 42.6
VMungo1127G0740 Vigna mungo HOM05D006511 ORTHO05D007567 6.8e-49 198.4 323 41.5
Migut.C01397 Erythranthe guttata HOM05D006511 ORTHO05D007567 2.6e-48 196.4 264 46.2
Nn5g27238 Nelumbo nucifera HOM05D006511 ORTHO05D007567 2.6e-48 196.4 285 42.8
Cfa008039 Carpinus fangiana HOM05D006511 ORTHO05D007567 5.8e-48 195.3 279 45.5
Gohir.D08G249200 Gossypium hirsutum HOM05D006511 ORTHO05D007567 5.8e-48 195.3 280 43.2
SGA_v2.0_scaffold118G32636 Striga asiatica HOM05D006511 ORTHO05D007567 7.6e-48 194.9 279 43.7
Gorai.004G265800 Gossypium raimondii HOM05D006511 ORTHO05D007567 9.9e-48 194.5 280 43.2
Glyma.12G241400 Glycine max HOM05D006511 ORTHO05D007567 1.4e-46 190.7 272 44.9
Gohir.A08G228900 Gossypium hirsutum HOM05D006511 ORTHO05D007567 6.0e-45 185.3 260 46.2
MBI15_g27824_MAGBIO Magnolia biondii HOM05D006511 ORTHO05D007567 6.0e-45 185.3 266 44.0
AUR62038542 Chenopodium quinoa HOM05D006511 ORTHO05D007567 1.3e-44 184.1 253 44.7
PGSC0003DMG401019059 Solanum tuberosum HOM05D006511 ORTHO05D007567 2.5e-43 179.9 252 43.3
Lj3g0014137 Lotus japonicus HOM05D006511 ORTHO05D007567 4.3e-43 179.1 276 41.7
MBI15_g27821_MAGBIO Magnolia biondii HOM05D006511 ORTHO05D007567 1.6e-42 177.2 266 42.9
Ca_13616_v3 Cicer arietinum L. HOM05D006511 ORTHO05D007567 2.8e-42 176.4 286 40.9
Ca_30187_v3 Cicer arietinum L. HOM05D006511 ORTHO05D007567 2.8e-42 176.4 286 40.9
Haze_13990 Corylus avellana HOM05D006511 ORTHO05D007567 3.4e-40 169.5 271 42.8
MELO3C008102.2 Cucumis melo HOM05D006511 ORTHO05D007567 2.2e-39 166.8 286 39.9
Hma1.2p1_1405F.1_g281380 Hydrangea macrophylla HOM05D006511 ORTHO05D007567 4.9e-39 165.6 151 60.9
AL1G48040 Arabidopsis lyrata HOM05D006511 ORTHO05D007567 6.4e-39 165.2 110 80.9
ClCG11G008290 Citrullus lanatus HOM05D006511 ORTHO05D007567 5.4e-38 162.2 353 36.0
EL10Ac1g01283 Beta vulgaris HOM05D006511 ORTHO05D007567 7.1e-38 161.8 261 41.4
HPP92_003819 Vanilla planifolia HOM05D006511 ORTHO05D007567 6.6e-36 155.2 255 40.0
Aqoxy6G00041 Aquilegia oxysepala HOM05D006511 ORTHO05D007567 1.5e-35 154.1 254 40.2
FvH4_2g04930 Fragaria vesca HOM05D006511 ORTHO05D007567 3.3e-35 152.9 269 41.6
Atru.chr13.2578 Acer truncatum HOM05D006511 ORTHO05D007567 4.3e-35 152.5 278 39.2
FAN20G1821 Fragaria x ananassa HOM05D006511 ORTHO05D007567 5.6e-35 152.1 199 47.7
FAN24G3334 Fragaria x ananassa HOM05D006511 ORTHO05D007567 3.6e-34 149.4 216 44.9
Ah.13g067720 Amaranthus hybridus HOM05D006511 ORTHO05D007567 1.8e-33 147.1 235 40.9
CsaV3_2G033310 Cucumis sativus L. HOM05D006511 ORTHO05D007567 4.0e-33 146.0 292 36.0
Cc10_g16070 Coffea canephora HOM05D006511 ORTHO05D007567 7.6e-32 141.7 198 44.4
PGR004G0115 Punica granatum HOM05D006511 ORTHO05D007567 7.6e-32 141.7 224 41.5
Sc01g0000180 Simmondsia chinensis HOM05D006511 ORTHO05D007567 3.8e-31 139.4 137 59.1
CDE10G1127 Ceratophyllum demersum HOM05D006511 ORTHO05D007567 8.4e-31 138.3 251 35.1
Eucgr.F04079 Eucalyptus grandis HOM05D006511 ORTHO05D007567 4.2e-30 136.0 123 61.8
COL.COLO4_05796 Corchorus olitorius HOM05D006511 ORTHO05D007567 1.2e-29 134.4 343 32.1
AUR62013391 Chenopodium quinoa HOM05D006511 ORTHO05D007567 3.5e-29 132.9 224 39.7
Lj8A308G12 Lonicera japonica HOM05D006511 ORTHO05D007567 4.6e-29 132.5 234 41.9
arahy.Tifrunner.gnm1.ann1.VJ45CS Arachis hypogaea HOM05D006511 ORTHO05D007567 6.0e-29 132.1 128 56.2
unitig_749.g13868 Utricularia gibba HOM05D006511 ORTHO05D007567 1.5e-27 127.5 253 39.1
Ciclev10023919m.g Citrus clementina HOM05D006511 ORTHO05D007567 3.3e-27 126.3 142 54.9
COL.COLO4_05044 Corchorus olitorius HOM05D006511 ORTHO05D007567 9.6e-27 124.8 209 40.7
Peaxi162Scf00078g01026 Petunia axillaris HOM05D006511 ORTHO05D007567 3.6e-26 122.9 267 32.6
Medtr1g067720 Medicago truncatula HOM05D006511 ORTHO05D007567 5.3e-25 119.0 128 50.0
Nitab4.5_0001489g0030 Nicotiana tabacum HOM05D006511 ORTHO05D007567 4.9e-23 112.5 250 32.8
Lalb_Chr19g0131901 Lupinus albus HOM05D006511 ORTHO05D007567 2.4e-22 110.2 110 50.0
Hma1.2p1_1476F.1_g285820 Hydrangea macrophylla HOM05D006511 ORTHO05D007567 7.1e-22 108.6 161 43.5
MSTRG.1607 Avicennia marina HOM05D006511 ORTHO05D007567 1.6e-21 107.5 164 41.5
Medtr1g067710 Medicago truncatula HOM05D006511 ORTHO05D007567 4.6e-21 105.9 106 52.8
arahy.Tifrunner.gnm1.ann1.FKD4F4 Arachis hypogaea HOM05D006511 ORTHO05D007567 1.8e-20 104.0 106 48.1
Os08g0320300 Oryza sativa ssp. japonica HOM05D006511 ORTHO05D007567 3.9e-20 102.8 130 47.7
Nitab4.5_0000009g0490 Nicotiana tabacum HOM05D006511 ORTHO05D007567 1.9e-19 100.5 253 30.8
Cpa.g.sc142.8 Carica papaya HOM05D006511 ORTHO05D007567 4.8e-18 95.9 199 35.2
Zm00001eb028220 Zea mays HOM05D006511 ORTHO05D007567 4.0e-17 92.8 234 32.5
Haze_13992 Corylus avellana HOM05D006511 ORTHO05D007567 6.9e-17 92.0 206 33.0
Eucgr.F04078 Eucalyptus grandis HOM05D006511 ORTHO05D007567 1.7e-15 87.4 107 44.9
ATR1204G001 Amborella trichopoda HOM05D006511 ORTHO05D007567 6.5e-15 85.5 191 30.4
Sc01g0000190 Simmondsia chinensis HOM05D006511 ORTHO05D007567 8.4e-15 85.1 95 43.2
vmacro11027 Vaccinium macrocarpon HOM05D006511 ORTHO05D007567 8.4e-15 85.1 152 42.1
Ciclev10023084m.g Citrus clementina HOM05D006511 ORTHO05D007567 1.2e-13 81.3 95 47.4
COL.COLO4_36458 Corchorus olitorius HOM05D006511 ORTHO05D007567 4.6e-13 79.3 80 51.2
Nn5g27242 Nelumbo nucifera HOM05D006511 ORTHO05D007567 3.0e-12 76.6 84 47.6
Lalb_Chr19g0131891 Lupinus albus HOM05D006511 ORTHO05D007567 1.3e-10 71.2 70 52.9
Hma1.2p1_1476F.1_g285810 Hydrangea macrophylla HOM05D006511 ORTHO05D007567 1.4e-09 67.8 55 60.0
Haze_13997 Corylus avellana HOM05D006511 ORTHO05D007567 6.9e-09 65.5 63 57.1
Lalb_Chr19g0131881 Lupinus albus HOM05D006511 ORTHO05D007567 9.0e-09 65.1 48 66.7
SMO137G0232 Selaginella moellendorffii HOM05D006511 ORTHO05D007567 2.6e-08 63.5 128 33.6
vmacro11028 Vaccinium macrocarpon HOM05D006511 ORTHO05D007567 3.4e-08 63.2 56 57.1


User provided reference genes

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