Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g27781 Brassica carinata HOM05D003947 ORTHO05D004614 5.4e-107 391.0 191 100.0
BolC5t32518H Brassica oleracea HOM05D003947 ORTHO05D004614 2.3e-97 359.0 192 94.3
A05p24080 Brassica napus HOM05D003947 ORTHO05D004614 1.6e-95 352.8 192 93.2
C05p37750 Brassica napus HOM05D003947 ORTHO05D004614 1.9e-91 339.3 167 99.4
BcaB07g33023 Brassica carinata HOM05D030501 ORTHO05D004614 1.2e-82 310.1 201 81.1
BraA05t21288Z Brassica rapa HOM05D003947 ORTHO05D006423 3.9e-81 305.1 168 92.9
Sp1g29270 Schrenkiella parvula HOM05D003947 ORTHO05D004614 1.9e-80 302.8 199 79.4
BcaC08g43824 Brassica carinata HOM05D003947 ORTHO05D004614 3.0e-73 278.9 198 76.8
BolC6t36345H Brassica oleracea HOM05D003947 ORTHO05D004614 3.0e-73 278.9 198 76.8
C06p12080 Brassica napus HOM05D003947 ORTHO05D004614 1.9e-72 276.2 198 76.3
A09p32460 Brassica napus HOM05D003947 ORTHO05D004614 1.4e-70 270.0 199 74.4
Thhalv10008850m.g Eutrema salsugineum HOM05D003947 ORTHO05D004614 1.8e-70 269.6 194 74.2
Carub.0001s3209 Capsella rubella HOM05D003947 ORTHO05D004614 2.0e-69 266.2 205 69.8
AL1G48450 Arabidopsis lyrata HOM05D003947 ORTHO05D004614 5.8e-69 264.6 203 70.9
Aa31LG6G8230 Aethionema arabicum HOM05D003947 ORTHO05D004614 2.4e-67 259.2 200 69.5
AT1G34010 Arabidopsis thaliana HOM05D003947 ORTHO05D004614 2.7e-66 255.8 195 69.7
CARHR033390 Cardamine hirsuta HOM05D003947 ORTHO05D004614 3.0e-65 252.3 203 67.5
BraA09t38788Z Brassica rapa HOM05D003947 ORTHO05D004614 1.5e-61 240.0 175 76.0
THA.LOC104806764 Tarenaya hassleriana HOM05D003947 ORTHO05D004614 1.4e-54 216.9 206 61.7
THA.LOC104813088 Tarenaya hassleriana HOM05D003947 ORTHO05D004614 4.5e-53 211.8 206 59.2
CiPaw.15G012800 Carya illinoinensis HOM05D003947 ORTHO05D004614 9.3e-43 177.6 208 49.0
FvH4_2g13060 Fragaria vesca HOM05D003947 ORTHO05D004614 9.3e-43 177.6 208 50.0
RcHm_v2.0_Chr6g0274321 Rosa chinensis HOM05D003947 ORTHO05D004614 1.6e-42 176.8 205 50.7
FAN24G1125 Fragaria x ananassa HOM05D003947 ORTHO05D004614 3.6e-42 175.6 207 49.3
Sopen04g027950 Solanum pennellii HOM05D003947 ORTHO05D004614 3.6e-42 175.6 208 51.0
FAN27G1126 Fragaria x ananassa HOM05D003947 ORTHO05D004614 1.0e-41 174.1 208 50.5
Solyc04g071970.4 Solanum lycopersicum HOM05D003947 ORTHO05D004614 2.3e-41 172.9 208 50.5
TWI32G0514 Tripterygium wilfordii HOM05D003947 ORTHO05D004614 2.3e-41 172.9 207 49.8
Prupe.8G040000 Prunus persica HOM05D003947 ORTHO05D004614 3.9e-41 172.2 207 51.2
TWI60G0849 Tripterygium wilfordii HOM05D003947 ORTHO05D004614 3.9e-41 172.2 207 48.3
Lalb_Chr21g0305571 Lupinus albus HOM05D003947 ORTHO05D004614 8.7e-41 171.0 208 49.0
Duzib116G0212 Durio zibethinus HOM05D003947 ORTHO05D004614 1.1e-40 170.6 208 49.0
Eucgr.F04191 Eucalyptus grandis HOM05D003947 ORTHO05D004614 1.1e-40 170.6 206 48.1
MD05G1032900 Malus domestica HOM05D003947 ORTHO05D004614 1.1e-40 170.6 207 47.3
Cfa018286 Carpinus fangiana HOM05D003947 ORTHO05D004614 1.9e-40 169.9 207 48.8
Thecc.08G158700 Theobroma cacao HOM05D003947 ORTHO05D004614 1.9e-40 169.9 208 50.5
CANSAT25G3237 Cannabis sativa HOM05D003947 ORTHO05D004614 2.5e-40 169.5 208 48.6
MD10G1033900 Malus domestica HOM05D003947 ORTHO05D004614 2.5e-40 169.5 207 49.8
Ciclev10002453m.g Citrus clementina HOM05D003947 ORTHO05D004614 5.7e-40 168.3 214 48.6
Lalb_Chr02g0141531 Lupinus albus HOM05D003947 ORTHO05D004614 5.7e-40 168.3 207 45.4
Psat6g190840 Pisum sativum HOM05D003947 ORTHO05D004614 1.3e-39 167.2 208 46.6
arahy.Tifrunner.gnm1.ann1.8MR9WY Arachis hypogaea HOM05D003947 ORTHO05D004614 1.6e-39 166.8 208 48.1
CiPaw.16G008700 Carya illinoinensis HOM05D003947 ORTHO05D004614 2.2e-39 166.4 206 48.5
PGSC0003DMG401025066 Solanum tuberosum HOM05D003947 ORTHO05D004614 2.2e-39 166.4 208 49.0
Ca_10666_v3 Cicer arietinum L. HOM05D003947 ORTHO05D004614 2.8e-39 166.0 209 44.5
Sed0008617 Sechium edule HOM05D003947 ORTHO05D004614 3.7e-39 165.6 210 48.1
FAN15G1092 Fragaria x ananassa HOM05D003947 ORTHO05D004614 8.2e-39 164.5 203 48.3
Glyma.20G169600 Glycine max HOM05D003947 ORTHO05D004614 8.2e-39 164.5 208 46.6
VMungo0720G0983 Vigna mungo HOM05D003947 ORTHO05D004614 8.2e-39 164.5 208 45.7
Sabra05G0149600 Salix brachista HOM05D003947 ORTHO05D004614 1.1e-38 164.1 207 48.3
Peaxi162Scf00360g00029 Petunia axillaris HOM05D003947 ORTHO05D004614 1.4e-38 163.7 210 48.1
Glyma.10G221900 Glycine max HOM05D003947 ORTHO05D004614 3.1e-38 162.5 208 46.6
Gohir.A05G246100 Gossypium hirsutum HOM05D003947 ORTHO05D004614 3.1e-38 162.5 209 50.2
Potri.005G196300 Populus trichocarpa HOM05D003947 ORTHO05D004614 3.1e-38 162.5 207 47.3
Duzib093G0177 Durio zibethinus HOM05D003947 ORTHO05D004614 4.1e-38 162.2 208 48.1
Gohir.D05G247600 Gossypium hirsutum HOM05D003947 ORTHO05D004614 4.1e-38 162.2 209 49.8
Gorai.005G077400 Gossypium raimondii HOM05D003947 ORTHO05D004614 4.1e-38 162.2 210 49.0
Gorai.009G258400 Gossypium raimondii HOM05D003947 ORTHO05D004614 4.1e-38 162.2 209 49.8
Nitab4.5_0002812g0010 Nicotiana tabacum HOM05D003947 ORTHO05D004614 4.1e-38 162.2 210 47.1
Phvul.007G083100 Phaseolus vulgaris HOM05D003947 ORTHO05D004614 5.3e-38 161.8 208 45.2
Gohir.D02G068500 Gossypium hirsutum HOM05D003947 ORTHO05D004614 1.2e-37 160.6 210 48.6
Hma1.2p1_0678F.1_g202000 Hydrangea macrophylla HOM05D003947 ORTHO05D004614 1.2e-37 160.6 210 45.7
Cc10_g15190 Coffea canephora HOM05D003947 ORTHO05D004614 1.5e-37 160.2 207 45.9
Nitab4.5_0000099g0180 Nicotiana tabacum HOM05D003947 ORTHO05D004614 1.5e-37 160.2 210 47.1
Sabra02G0051800 Salix brachista HOM05D003947 ORTHO05D004614 4.5e-37 158.7 207 45.9
Actinidia29546 Actinidia chinensis HOM05D003947 ORTHO05D004614 5.9e-37 158.3 210 45.2
Gohir.A02G062801 Gossypium hirsutum HOM05D003947 ORTHO05D004614 1.0e-36 157.5 210 48.1
Atru.chr13.2012 Acer truncatum HOM05D003947 ORTHO05D004614 1.3e-36 157.1 212 47.6
Manes.02G182900 Manihot esculenta HOM05D003947 ORTHO05D004614 1.3e-36 157.1 209 45.9
PGR044G0664 Punica granatum HOM05D003947 ORTHO05D004614 1.3e-36 157.1 210 45.2
GSVIVG01034579001 Vitis vinifera HOM05D003947 ORTHO05D004614 1.7e-36 156.8 206 49.5
PSO541G4258 Papaver somniferum HOM05D003947 ORTHO05D004614 2.2e-36 156.4 213 47.9
Potri.002G064900 Populus trichocarpa HOM05D003947 ORTHO05D004614 2.2e-36 156.4 206 46.1
Dinv41043 Davidia involucrata HOM05D003947 ORTHO05D004614 2.9e-36 156.0 209 46.9
Medtr1g098260 Medicago truncatula HOM05D003947 ORTHO05D004614 3.8e-36 155.6 229 41.0
PSO675G7401 Papaver somniferum HOM05D003947 ORTHO05D004614 5.0e-36 155.2 215 47.9
ClCG08G003050 Citrullus lanatus HOM05D003947 ORTHO05D004614 8.5e-36 154.5 199 47.2
Actinidia04751 Actinidia chinensis HOM05D003947 ORTHO05D004614 3.2e-35 152.5 191 45.5
AUR62026639 Chenopodium quinoa HOM05D003947 ORTHO05D004614 4.2e-35 152.1 209 44.5
Sc02g0003850 Simmondsia chinensis HOM05D003947 ORTHO05D004614 5.5e-35 151.8 207 45.9
Lj5g0019118 Lotus japonicus HOM05D003947 ORTHO05D004614 1.2e-34 150.6 212 44.3
Glyma.16G163700 Glycine max HOM05D003947 ORTHO05D004614 2.1e-34 149.8 206 43.7
Manes.18G094500 Manihot esculenta HOM05D003947 ORTHO05D004614 3.6e-34 149.1 207 45.9
Migut.C00963 Erythranthe guttata HOM05D003947 ORTHO05D004614 7.9e-34 147.9 222 44.1
COL.COLO4_03360 Corchorus olitorius HOM05D003947 ORTHO05D004614 1.0e-33 147.5 184 48.4
Aa31LG4G8980 Aethionema arabicum HOM05D003947 ORTHO05D004614 1.8e-33 146.7 205 43.9
arahy.Tifrunner.gnm1.ann1.H1TMWI Arachis hypogaea HOM05D003947 ORTHO05D004614 1.8e-33 146.7 206 44.2
Actinidia17770 Actinidia chinensis HOM05D003947 ORTHO05D004614 2.3e-33 146.4 208 43.8
Hma1.2p1_0358F.1_g134715 Hydrangea macrophylla HOM05D003947 ORTHO05D004614 3.0e-33 146.0 212 43.9
Duzib041G0104 Durio zibethinus HOM05D003947 ORTHO05D004614 8.8e-33 144.4 184 53.3
Haze_17801 Corylus avellana HOM05D003947 ORTHO05D004614 1.5e-32 143.7 183 48.1
arahy.Tifrunner.gnm1.ann1.P1AQDG Arachis hypogaea HOM05D003947 ORTHO05D004614 2.0e-32 143.3 186 47.8
HPP92_002802 Vanilla planifolia HOM05D003947 ORTHO05D004614 2.6e-32 142.9 206 44.2
arahy.Tifrunner.gnm1.ann1.2W58SS Arachis hypogaea HOM05D003947 ORTHO05D004614 3.3e-32 142.5 206 43.7
CSS0022992 Camellia sinensis var. sinensis HOM05D003947 ORTHO05D004614 3.3e-32 142.5 210 44.8
QL02p038162 Quercus lobata HOM05D003947 ORTHO05D004614 1.7e-31 140.2 183 44.8
Hund17479 Selenicereus undatus HOM05D003947 ORTHO05D004614 1.7e-31 140.2 202 45.5
PGR042G2534 Punica granatum HOM05D003947 ORTHO05D004614 2.2e-31 139.8 207 44.4
Glyma.02G079300 Glycine max HOM05D003947 ORTHO05D004614 2.8e-31 139.4 202 42.1
MSTRG.1106 Avicennia marina HOM05D003947 ORTHO05D004614 8.2e-31 137.9 218 41.3
HanXRQChr05g0162361 Helianthus annuus HOM05D003947 ORTHO05D004614 8.2e-31 137.9 213 42.7
Migut.N03200 Erythranthe guttata HOM05D003947 ORTHO05D004614 1.4e-30 137.1 224 39.7
CSS0014660 Camellia sinensis var. sinensis HOM05D003947 ORTHO05D004614 1.8e-30 136.7 194 41.8
MSTRG.24219 Avicennia marina HOM05D003947 ORTHO05D004614 2.4e-30 136.3 214 41.6
Rhsim11G0087300 Rhododendron simsii HOM05D003947 ORTHO05D004614 2.4e-30 136.3 209 43.1
Aa31LG7G6750 Aethionema arabicum HOM05D003947 ORTHO05D004614 3.1e-30 136.0 210 41.4
AL1G36340 Arabidopsis lyrata HOM05D003947 ORTHO05D004614 1.2e-29 134.0 215 40.9
TAR376G1220 Trochodendron aralioides HOM05D003947 ORTHO05D004614 1.2e-29 134.0 207 42.5
MSTRG.25300 Avicennia marina HOM05D003947 ORTHO05D004614 3.4e-29 132.5 225 39.6
HanXRQChr10g0278611 Helianthus annuus HOM05D003947 ORTHO05D004614 3.4e-29 132.5 210 41.9
vmacro21121 Vaccinium macrocarpon HOM05D003947 ORTHO05D004614 3.4e-29 132.5 211 42.2
AUR62034897 Chenopodium quinoa HOM05D003947 ORTHO05D004614 5.9e-29 131.7 185 44.9
AT1G22790 Arabidopsis thaliana HOM05D003947 ORTHO05D004614 1.3e-28 130.6 217 41.0
Cpa.g.sc26.88 Carica papaya HOM05D003947 ORTHO05D004614 1.3e-28 130.6 179 43.6
ECA246G0665 Erigeron canadensis HOM05D003947 ORTHO05D006423 1.7e-28 130.2 204 40.7
THA.LOC104810422 Tarenaya hassleriana HOM05D003947 ORTHO05D004614 2.2e-28 129.8 208 40.9
CARHR023150 Cardamine hirsuta HOM05D003947 ORTHO05D004614 2.9e-28 129.4 227 38.8
MELO3C008326.2 Cucumis melo HOM05D003947 ORTHO05D004614 1.1e-27 127.5 213 41.3
SGA_v2.0_scaffold108G30867 Striga asiatica HOM05D003947 ORTHO05D004614 1.1e-27 127.5 205 44.9
Carub.0001s2230 Capsella rubella HOM05D003947 ORTHO05D004614 1.4e-27 127.1 218 41.3
DCAR_001161 Daucus carota HOM05D003947 ORTHO05D004614 1.4e-27 127.1 186 43.0
Dinv25896 Davidia involucrata HOM05D003947 ORTHO05D004614 3.2e-27 125.9 206 40.3
CsaV3_6G005040 Cucumis sativus L. HOM05D003947 ORTHO05D004614 4.2e-27 125.6 213 41.3
Os01g0589700 Oryza sativa ssp. japonica HOM05D003947 ORTHO05D004614 5.5e-27 125.2 205 38.0
Sed0016828 Sechium edule HOM05D003947 ORTHO05D004614 5.5e-27 125.2 184 41.8
TAR628G1588 Trochodendron aralioides HOM05D003947 ORTHO05D004614 1.2e-26 124.0 182 44.0
Aqoxy6G00408 Aquilegia oxysepala HOM05D003947 ORTHO05D004614 1.6e-26 123.6 185 41.6
Oeu017623.1 Olea europaea HOM05D003947 ORTHO05D004614 1.6e-26 123.6 188 42.0
Zm00001eb160770 Zea mays HOM05D003947 ORTHO05D004614 1.6e-26 123.6 209 37.8
MBI04_g08942_MAGBIO Magnolia biondii HOM05D003947 ORTHO05D004614 2.1e-26 123.2 181 44.2
Nn1g06005 Nelumbo nucifera HOM05D003947 ORTHO05D004614 2.7e-26 122.9 202 43.1
Ah.05g168170 Amaranthus hybridus HOM05D003947 ORTHO05D004614 4.7e-26 122.1 186 43.0
Lj4P703T37 Lonicera japonica HOM05D003947 ORTHO05D004614 4.7e-26 122.1 187 44.9
Oeu022056.3 Olea europaea HOM05D003947 ORTHO05D004614 6.1e-26 121.7 187 41.2
SGA_v2.0_scaffold195G40776 Striga asiatica HOM05D003947 ORTHO05D004614 1.8e-25 120.2 196 41.3
TAR625G1169 Trochodendron aralioides HOM05D003947 ORTHO05D004614 3.9e-25 119.0 183 42.1
ClCG08G007400 Citrullus lanatus HOM05D003947 ORTHO05D004614 6.7e-25 118.2 209 39.7
Hund26679 Selenicereus undatus HOM05D003947 ORTHO05D004614 8.8e-25 117.9 179 41.3
SalBow6G2315 Salvia bowleyana HOM05D003947 ORTHO05D004614 1.1e-24 117.5 205 41.5
TAR381G1088 Trochodendron aralioides HOM05D003947 ORTHO05D004614 2.0e-24 116.7 189 43.4
Lj7P382T65 Lonicera japonica HOM05D003947 ORTHO05D004614 5.7e-24 115.2 187 44.9
Oeu051281.1 Olea europaea HOM05D003947 ORTHO05D004614 5.7e-24 115.2 192 41.1
vmacro01489 Vaccinium macrocarpon HOM05D003947 ORTHO05D004614 9.7e-24 114.4 184 44.6
Zm00001eb357510 Zea mays HOM05D003947 ORTHO05D004614 1.3e-23 114.0 184 39.1
Lalb_Chr19g0130101 Lupinus albus HOM05D003947 ORTHO05D004614 2.8e-23 112.8 205 37.1
Lsat_1_v5_gn_6_101640 Lactuca sativa HOM05D003947 ORTHO05D004614 4.8e-23 112.1 213 38.0
PSO700G0284 Papaver somniferum HOM05D003947 ORTHO05D004614 8.2e-23 111.3 201 39.8
SalBow7G0665 Salvia bowleyana HOM05D003947 ORTHO05D004614 1.8e-22 110.2 188 42.6
PSO170G0396 Papaver somniferum HOM05D003947 ORTHO05D004614 2.4e-22 109.8 204 39.7
VMungo0464G0903 Vigna mungo HOM05D003947 ORTHO05D004614 7.0e-22 108.2 181 39.8
Oeu002064.1 Olea europaea HOM05D003947 ORTHO05D004614 9.1e-22 107.8 189 40.2
Lj2g0016258 Lotus japonicus HOM05D003947 ORTHO05D004614 2.0e-21 106.7 205 37.1
ATR1120G111 Amborella trichopoda HOM05D003947 ORTHO05D004614 2.6e-21 106.3 212 39.6
TPR.G17018 Trifolium pratense HOM05D003947 ORTHO05D004614 2.6e-21 106.3 170 35.9
BraA09t39684Z Brassica rapa HOM05D003947 ORTHO05D004614 3.8e-20 102.4 225 34.2
Actinidia26828 Actinidia chinensis HOM05D003947 ORTHO05D004614 1.8e-17 93.6 148 37.2
unitig_32.g11256 Utricularia gibba HOM05D003947 ORTHO05D004614 2.3e-17 93.2 230 34.3
Rhsim06G0091600 Rhododendron simsii HOM05D003947 ORTHO05D004614 6.7e-17 91.7 204 34.8
Phvul.004G091200 Phaseolus vulgaris HOM05D003947 ORTHO05D004614 8.8e-17 91.3 181 35.4
BcaNung06442 Brassica carinata HOM05D003947 ORTHO05D004614 1.2e-16 90.9 234 33.3
Sed0022469 Sechium edule HOM05D003947 ORTHO05D004614 1.2e-16 90.9 162 40.7
SHI09085 Sapria himalayana HOM05D003947 ORTHO05D004614 2.0e-16 90.1 188 36.2
Manes.16G051400 Manihot esculenta HOM05D003947 ORTHO05D004614 5.7e-16 88.6 149 41.6
Sed0006124 Sechium edule HOM05D003947 ORTHO05D004614 6.3e-15 85.1 166 37.3
Lsat_1_v5_gn_1_5261 Lactuca sativa HOM05D003947 ORTHO05D004614 9.1e-14 81.3 220 30.9
Os05g0591450 Oryza sativa ssp. japonica HOM05D003947 ORTHO05D004614 2.0e-13 80.1 104 48.1
BolC5t30884H Brassica oleracea HOM05D003947 ORTHO05D004614 1.1e-11 74.3 173 32.9
BcaNung06106 Brassica carinata HOM05D003947 ORTHO05D004614 1.5e-11 73.9 171 33.3
A09p41960 Brassica napus HOM05D003947 ORTHO05D004614 7.2e-11 71.6 213 28.6
C05p21890 Brassica napus HOM05D003947 ORTHO05D004614 1.2e-10 70.9 170 32.4
Lsat_1_v5_gn_9_42121 Lactuca sativa HOM05D003947 ORTHO05D004614 1.2e-10 70.9 199 35.7
HPP92_002804 Vanilla planifolia HOM05D003947 ORTHO05D004614 1.7e-07 60.5 151 33.1
Gohir.A09G202700 Gossypium hirsutum HOM05D009286 ORTHO05D011130 6.3e-07 58.5 80 48.8
Gohir.D09G196800 Gossypium hirsutum HOM05D009286 ORTHO05D011130 6.3e-07 58.5 80 48.8
Gorai.006G220200 Gossypium raimondii HOM05D009286 ORTHO05D011130 6.3e-07 58.5 80 48.8
ClCG03G014560 Citrullus lanatus HOM05D007392 ORTHO05D009181 7.0e-06 55.1 89 38.2
TWI34G1824 Tripterygium wilfordii HOM05D007392 ORTHO05D009181 9.1e-06 54.7 46 47.8


User provided reference genes

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