Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g27681 Brassica carinata HOM05D005489 ORTHO05D006629 4.9e-72 274.2 127 100.0
BcaB03g13640 Brassica carinata HOM05D005489 ORTHO05D006629 1.1e-58 229.9 121 92.6
A05p23180 Brassica napus HOM05D005489 ORTHO05D006629 1.1e-58 229.9 121 92.6
C05p36630 Brassica napus HOM05D005489 ORTHO05D006629 1.1e-58 229.9 121 92.6
BraA05t21185Z Brassica rapa HOM05D005489 ORTHO05D006629 1.1e-58 229.9 121 92.6
CARHR034780 Cardamine hirsuta HOM05D005489 ORTHO05D006629 1.8e-58 229.2 121 90.9
AL1G51120 Arabidopsis lyrata HOM05D005489 ORTHO05D006629 2.4e-58 228.8 121 91.7
AT1G36980 Arabidopsis thaliana HOM05D005489 ORTHO05D006629 2.4e-58 228.8 121 91.7
Sp1g31180 Schrenkiella parvula HOM05D005489 ORTHO05D006629 3.1e-58 228.4 121 91.7
Carub.0001s3388 Capsella rubella HOM05D005489 ORTHO05D006629 4.0e-58 228.0 121 91.7
Thhalv10005115m.g Eutrema salsugineum HOM05D005489 ORTHO05D006629 4.0e-58 228.0 121 90.9
THA.LOC104806808 Tarenaya hassleriana HOM05D005489 ORTHO05D006629 6.4e-56 220.7 121 86.8
Aa31LG6G9070 Aethionema arabicum HOM05D005489 ORTHO05D006629 4.1e-55 218.0 121 85.1
BolC5t32398H Brassica oleracea HOM05D005489 ORTHO05D006629 1.6e-54 216.1 115 92.2
THA.LOC104813132 Tarenaya hassleriana HOM05D005489 ORTHO05D006629 1.7e-53 212.6 121 83.5
Ciclev10002818m.g Citrus clementina HOM05D005489 ORTHO05D006629 6.6e-53 210.7 121 81.8
Hma1.2p1_0221F.1_g093180 Hydrangea macrophylla HOM05D005489 ORTHO05D006629 1.9e-52 209.1 121 82.6
SalBow1G3581 Salvia bowleyana HOM05D005489 ORTHO05D006629 5.6e-52 207.6 121 82.6
COL.COLO4_32811 Corchorus olitorius HOM05D005489 ORTHO05D006629 7.3e-52 207.2 121 81.8
Nitab4.5_0000051g0120 Nicotiana tabacum HOM05D005489 ORTHO05D006629 7.3e-52 207.2 121 82.6
Lsat_1_v5_gn_4_135561 Lactuca sativa HOM05D005489 ORTHO05D006629 9.6e-52 206.8 121 81.0
Nn5g27958 Nelumbo nucifera HOM05D005489 ORTHO05D006629 1.2e-51 206.5 121 79.3
PGSC0003DMG400027793 Solanum tuberosum HOM05D005489 ORTHO05D006629 1.2e-51 206.5 121 81.0
SGA_v2.0_scaffold118G32436 Striga asiatica HOM05D005489 ORTHO05D006629 1.2e-51 206.5 121 81.0
Aqoxy5G02479 Aquilegia oxysepala HOM05D005489 ORTHO05D006629 1.6e-51 206.1 121 81.0
Nitab4.5_0002332g0020 Nicotiana tabacum HOM05D005489 ORTHO05D006629 1.6e-51 206.1 120 83.3
Sopen11g008580 Solanum pennellii HOM05D005489 ORTHO05D006629 2.1e-51 205.7 121 80.2
TWI56G0906 Tripterygium wilfordii HOM05D005489 ORTHO05D006629 2.1e-51 205.7 121 79.3
Atru.chr13.1318 Acer truncatum HOM05D005489 ORTHO05D006629 2.8e-51 205.3 121 79.3
Atru.chr13.1362 Acer truncatum HOM05D005489 ORTHO05D006629 2.8e-51 205.3 121 79.3
PGR044G1289 Punica granatum HOM05D005489 ORTHO05D006629 2.8e-51 205.3 121 80.2
CAN.G255.20 Capsicum annuum HOM05D005489 ORTHO05D006629 3.6e-51 204.9 121 79.3
Gohir.A06G041000 Gossypium hirsutum HOM05D005489 ORTHO05D006629 3.6e-51 204.9 121 79.3
Gohir.D06G041900 Gossypium hirsutum HOM05D005489 ORTHO05D006629 3.6e-51 204.9 121 79.3
Gorai.010G047100 Gossypium raimondii HOM05D005489 ORTHO05D006629 3.6e-51 204.9 121 79.3
Manes.18G073000 Manihot esculenta HOM05D005489 ORTHO05D006629 4.7e-51 204.5 121 80.2
Solyc11g013550.2 Solanum lycopersicum HOM05D005489 ORTHO05D006629 4.7e-51 204.5 121 79.3
MELO3C022783.2 Cucumis melo HOM05D005489 ORTHO05D006629 8.1e-51 203.8 121 80.2
Dinv26716 Davidia involucrata HOM05D005489 ORTHO05D006629 8.1e-51 203.8 121 79.3
Gohir.A02G075000 Gossypium hirsutum HOM05D005489 ORTHO05D006629 8.1e-51 203.8 121 78.5
MD15G1359200 Malus domestica HOM05D005489 ORTHO05D006629 8.1e-51 203.8 121 81.0
Sed0015736 Sechium edule HOM05D005489 ORTHO05D006629 8.1e-51 203.8 121 80.2
MBI06_g01046_MAGBIO Magnolia biondii HOM05D005489 ORTHO05D006629 1.1e-50 203.4 120 76.7
Thecc.08G116800 Theobroma cacao HOM05D005489 ORTHO05D006629 1.1e-50 203.4 121 79.3
Gohir.D02G082100 Gossypium hirsutum HOM05D005489 ORTHO05D006629 1.4e-50 203.0 121 78.5
Sc01g0001550 Simmondsia chinensis HOM05D005489 ORTHO05D006629 1.4e-50 203.0 120 75.0
SGA_v2.0_scaffold24G10504 Striga asiatica HOM05D005489 ORTHO05D006629 1.4e-50 203.0 121 79.3
Gohir.A01G187700 Gossypium hirsutum HOM05D005489 ORTHO05D006629 1.8e-50 202.6 120 76.7
Nn1g08538 Nelumbo nucifera HOM05D005489 ORTHO05D006629 1.8e-50 202.6 121 76.9
TAR628G1556 Trochodendron aralioides HOM05D005489 ORTHO05D006629 1.8e-50 202.6 121 78.5
Dinv27383 Davidia involucrata HOM05D005489 ORTHO05D006629 2.4e-50 202.2 121 80.2
Sabra02G0070300 Salix brachista HOM05D005489 ORTHO05D006629 2.4e-50 202.2 121 79.3
Hund16821 Selenicereus undatus HOM05D005489 ORTHO05D006629 2.4e-50 202.2 120 77.5
VMungo1127G1458 Vigna mungo HOM05D005489 ORTHO05D006629 2.4e-50 202.2 120 78.3
DCAR_014792 Daucus carota HOM05D005489 ORTHO05D006629 3.1e-50 201.8 120 75.0
Glyma.04G253700 Glycine max HOM05D005489 ORTHO05D006629 3.1e-50 201.8 120 77.5
Duzib041G0073 Durio zibethinus HOM05D005489 ORTHO05D006629 4.0e-50 201.4 120 80.0
HanXRQChr09g0260151 Helianthus annuus HOM05D005489 ORTHO05D006629 4.0e-50 201.4 121 78.5
TWI12G0464 Tripterygium wilfordii HOM05D005489 ORTHO05D006629 4.0e-50 201.4 121 77.7
GSVIVG01008943001 Vitis vinifera HOM05D005489 ORTHO05D006629 4.0e-50 201.4 121 79.3
Migut.C01190 Erythranthe guttata HOM05D005489 ORTHO05D006629 5.2e-50 201.1 120 75.8
Peaxi162Scf01011g00023 Petunia axillaris HOM05D005489 ORTHO05D006629 5.2e-50 201.1 121 80.2
Potri.002G089300 Populus trichocarpa HOM05D005489 ORTHO05D006629 5.2e-50 201.1 121 79.3
arahy.Tifrunner.gnm1.ann1.204R5H Arachis hypogaea HOM05D005489 ORTHO05D006629 6.9e-50 200.7 120 77.5
arahy.Tifrunner.gnm1.ann1.64ZY3M Arachis hypogaea HOM05D005489 ORTHO05D006629 6.9e-50 200.7 120 77.5
Psat5g135600 Pisum sativum HOM05D005489 ORTHO05D006629 9.0e-50 200.3 120 77.5
QL12p035283 Quercus lobata HOM05D005489 ORTHO05D006629 9.0e-50 200.3 121 78.5
RcHm_v2.0_Chr7g0240921 Rosa chinensis HOM05D005489 ORTHO05D006629 9.0e-50 200.3 120 76.7
Ca_25761_v3 Cicer arietinum L. HOM05D005489 ORTHO05D006629 1.2e-49 199.9 120 77.5
Medtr3g073300 Medicago truncatula HOM05D005489 ORTHO05D006629 1.2e-49 199.9 120 77.5
TAR197G0004 Trochodendron aralioides HOM05D005489 ORTHO05D006629 1.2e-49 199.9 121 77.7
MSTRG.1486 Avicennia marina HOM05D005489 ORTHO05D006629 1.5e-49 199.5 121 76.9
CiPaw.05G228700 Carya illinoinensis HOM05D005489 ORTHO05D006629 1.5e-49 199.5 121 77.7
PSO017G5790 Papaver somniferum HOM05D005489 ORTHO05D006629 1.5e-49 199.5 121 77.7
PSO170G3859 Papaver somniferum HOM05D005489 ORTHO05D006629 1.5e-49 199.5 121 77.7
Phvul.011G165300 Phaseolus vulgaris HOM05D005489 ORTHO05D006629 1.5e-49 199.5 120 76.7
Glyma.06G108600 Glycine max HOM05D005489 ORTHO05D006629 2.0e-49 199.1 120 76.7
Gorai.002G220400 Gossypium raimondii HOM05D005489 ORTHO05D006629 2.0e-49 199.1 120 75.0
TPR.G32948 Trifolium pratense HOM05D005489 ORTHO05D006629 2.0e-49 199.1 120 76.7
EL10Ac1g00039 Beta vulgaris HOM05D005489 ORTHO05D006629 2.6e-49 198.7 121 77.7
CDE06G1809 Ceratophyllum demersum HOM05D005489 ORTHO05D006629 2.6e-49 198.7 120 73.3
HanXRQChr11g0326271 Helianthus annuus HOM05D005489 ORTHO05D006629 2.6e-49 198.7 120 75.0
Lalb_Chr08g0241711 Lupinus albus HOM05D005489 ORTHO05D006629 2.6e-49 198.7 120 77.5
Duzib093G1687 Durio zibethinus HOM05D005489 ORTHO05D006629 3.4e-49 198.4 121 77.7
Lalb_Chr11g0065701 Lupinus albus HOM05D005489 ORTHO05D006629 3.4e-49 198.4 120 76.7
Potri.005G171901 Populus trichocarpa HOM05D005489 ORTHO05D006629 3.4e-49 198.4 121 77.7
FvH4_5g38950 Fragaria vesca HOM05D005489 ORTHO05D006629 5.8e-49 197.6 121 78.5
FAN04G1587 Fragaria x ananassa HOM05D005489 ORTHO05D006629 5.8e-49 197.6 121 78.5
FAN08G2064 Fragaria x ananassa HOM05D005489 ORTHO05D006629 5.8e-49 197.6 121 78.5
FAN13G3020 Fragaria x ananassa HOM05D005489 ORTHO05D006629 5.8e-49 197.6 121 78.5
FAN18G3455 Fragaria x ananassa HOM05D005489 ORTHO05D006629 5.8e-49 197.6 121 78.5
Rhsim06G0109100 Rhododendron simsii HOM05D005489 ORTHO05D006629 9.9e-49 196.8 120 75.0
Migut.N03320 Erythranthe guttata HOM05D005489 ORTHO05D006629 1.3e-48 196.4 121 79.3
Lj1g0000272 Lotus japonicus HOM05D005489 ORTHO05D006629 1.3e-48 196.4 110 81.8
Prupe.1G506000 Prunus persica HOM05D005489 ORTHO05D006629 3.8e-48 194.9 102 86.3
Cc10_g10440 Coffea canephora HOM05D005489 ORTHO05D006629 8.4e-48 193.7 121 80.2
Oeu032962.1 Olea europaea HOM05D005489 ORTHO05D006629 3.2e-47 191.8 120 75.0
ECA232G0625 Erigeron canadensis HOM05D005489 ORTHO05D006629 5.4e-47 191.0 117 78.6
Gohir.D01G181900 Gossypium hirsutum HOM05D005489 ORTHO05D006629 5.4e-47 191.0 120 73.3
Oeu043793.1 Olea europaea HOM05D005489 ORTHO05D006629 6.0e-46 187.6 123 72.4
Actinidia29431 Actinidia chinensis HOM05D005489 ORTHO05D006629 1.4e-42 176.4 121 69.4
Zm00001eb100550 Zea mays HOM05D005489 ORTHO05D006629 4.5e-41 171.4 124 67.7
HPP92_002297 Vanilla planifolia HOM05D005489 ORTHO05D006629 7.6e-41 170.6 118 65.3
HPP92_005944 Vanilla planifolia HOM05D005489 ORTHO05D006629 3.8e-40 168.3 118 65.3
BcaC05g27682 Brassica carinata HOM05D005489 ORTHO05D006629 4.9e-40 167.9 74 100.0
C05p36640 Brassica napus HOM05D005489 ORTHO05D006629 4.9e-40 167.9 74 100.0
Zm00001eb244520 Zea mays HOM05D005489 ORTHO05D006629 6.4e-40 167.5 123 63.4
Os09g0453000 Oryza sativa ssp. japonica HOM05D005489 ORTHO05D006629 8.4e-40 167.2 123 65.0
SEGI_34511 Sequoiadendron giganteum HOM05D005489 ORTHO05D006629 1.1e-39 166.8 119 66.4
Os02g0566900 Oryza sativa ssp. japonica HOM05D005489 ORTHO05D006629 5.4e-39 164.5 106 68.9
AagrBONN_evm.TU.Sc2ySwM_344.2049 Anthoceros agrestis HOM05D005489 ORTHO05D006629 9.3e-39 163.7 121 64.5
unitig_747.g21477 Utricularia gibba HOM05D003597 ORTHO05D004420 1.2e-38 163.3 191 47.6
SMO116G0262 Selaginella moellendorffii HOM05D005489 ORTHO05D006629 1.1e-36 156.8 118 63.6
Mapoly0004s0020 Marchantia polymorpha HOM05D005489 ORTHO05D006629 3.3e-36 155.2 138 58.0
Pp3c1_10200 Physcomitrium patens HOM05D005489 ORTHO05D006629 4.3e-36 154.8 121 59.5
CANSAT25G2554 Cannabis sativa HOM05D005489 ORTHO05D006629 5.6e-36 154.5 92 73.9
Pp3c2_28270 Physcomitrium patens HOM05D005489 ORTHO05D006629 1.6e-35 152.9 121 59.5
Haze_00523 Corylus avellana HOM05D005489 ORTHO05D006629 2.1e-35 152.5 76 85.5
CBR_g30829 Chara braunii HOM05D005489 ORTHO05D006629 2.8e-35 152.1 115 60.9
Cfa015959 Carpinus fangiana HOM05D005489 ORTHO05D006629 8.1e-35 150.6 118 63.6
ClCG03G009110 Citrullus lanatus HOM05D005489 ORTHO05D006629 3.1e-34 148.7 74 85.1
CsaV3_5G023520 Cucumis sativus L. HOM05D005489 ORTHO05D006629 3.1e-34 148.7 74 85.1
TAR127G0005 Trochodendron aralioides HOM05D005489 ORTHO05D006629 6.9e-34 147.5 75 82.7
DCAR_023128 Daucus carota HOM05D005489 ORTHO05D006629 1.5e-33 146.4 75 81.3
ATR0121G008 Amborella trichopoda HOM05D005489 ORTHO05D006629 2.2e-32 142.5 74 81.1
Sabra05G0129400 Salix brachista HOM05D005489 ORTHO05D006629 2.4e-31 139.0 121 62.8
Nn2g15248 Nelumbo nucifera HOM05D005489 ORTHO05D006629 2.1e-30 136.0 73 78.1
Oeu050268.1 Olea europaea HOM05D005489 ORTHO05D006629 3.5e-30 135.2 88 71.6
Gorai.005G092000 Gossypium raimondii HOM05D005489 ORTHO05D006629 3.1e-26 122.1 77 79.2
Cre01.g042950 Chlamydomonas reinhardtii HOM05D005489 ORTHO05D006629 1.0e-21 107.1 115 40.9
AUR62004694 Chenopodium quinoa HOM05D005489 ORTHO05D006629 1.2e-17 93.6 136 44.9
Eucgr.F04378 Eucalyptus grandis HOM05D005489 ORTHO05D006629 7.6e-17 90.9 47 78.7
PRCOL_00003843 Prasinoderma coloniale HOM05D005489 ORTHO05D006629 3.3e-12 75.5 87 46.0
SalBow7G1125 Salvia bowleyana HOM05D002998 ORTHO05D006629 7.7e-09 64.3 35 71.4
SalBow7G4082 Salvia bowleyana HOM05D005489 ORTHO05D006629 7.7e-09 64.3 35 71.4
Sopen11g008620 Solanum pennellii HOM05D000147 ORTHO05D004360 2.2e-08 62.8 58 62.1
ClCG03G009140 Citrullus lanatus HOM05D005489 ORTHO05D006629 3.8e-08 62.0 48 72.9
Solyc11g013660.1 Solanum lycopersicum HOM05D005489 ORTHO05D006629 2.7e-06 55.8 64 54.7


User provided reference genes

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